Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_Chemical.Obsolete.Examples.AcidBase.WaterSelfIonization.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.0008298/0.0008298, allocations: 81.17 kB / 19.87 MB, free: 4.621 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.0008354/0.0008354, allocations: 169 kB / 23.27 MB, free: 1.223 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9288/0.9288, allocations: 177.2 MB / 203.7 MB, free: 5.52 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo): time 0.08107/0.08107, allocations: 17.39 MB / 277.6 MB, free: 11.5 MB / 266.7 MB
"
[Timeout remaining time 180]
Using package Chemical with version 2.0.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Chemical.Obsolete.Examples.AcidBase.WaterSelfIonization,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_Chemical.Obsolete.Examples.AcidBase.WaterSelfIonization")
translateModel(Chemical.Obsolete.Examples.AcidBase.WaterSelfIonization,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_Chemical.Obsolete.Examples.AcidBase.WaterSelfIonization") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 2.184e-06/2.184e-06, allocations: 0 / 353.9 MB, free: 10.74 MB / 330.7 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 1.46e-05/1.678e-05, allocations: 2.312 kB / 353.9 MB, free: 10.73 MB / 330.7 MB
Notification: Performance of NFInst.instantiate(Chemical.Obsolete.Examples.AcidBase.WaterSelfIonization): time 0.006142/0.006159, allocations: 8.237 MB / 362.1 MB, free: 2.461 MB / 330.7 MB
Notification: Performance of NFInst.instExpressions: time 0.01726/0.02342, allocations: 23.76 MB / 385.9 MB, free: 10.61 MB / 362.7 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.0007173/0.02413, allocations: 27.75 kB / 385.9 MB, free: 10.59 MB / 362.7 MB
Notification: Performance of NFTyping.typeComponents: time 0.0008341/0.02497, allocations: 472.2 kB / 386.4 MB, free: 10.12 MB / 362.7 MB
Notification: Performance of NFTyping.typeBindings: time 0.003501/0.02847, allocations: 2.23 MB / 388.6 MB, free: 7.875 MB / 362.7 MB
Notification: Performance of NFTyping.typeClassSections: time 0.005342/0.03381, allocations: 3.16 MB / 391.8 MB, free: 4.695 MB / 362.7 MB
Notification: Performance of NFFlatten.flatten: time 0.001724/0.03553, allocations: 2.522 MB / 394.3 MB, free: 2.16 MB / 362.7 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.0008305/0.03636, allocations: 1.174 MB / 395.5 MB, free: 0.9453 MB / 362.7 MB
Notification: Performance of NFEvalConstants.evaluate: time 0.001113/0.03748, allocations: 1.696 MB / 397.2 MB, free: 15.25 MB / 378.7 MB
Notification: Performance of NFSimplifyModel.simplify: time 0.001175/0.03865, allocations: 1.134 MB / 398.3 MB, free: 14.11 MB / 378.7 MB
Notification: Performance of NFPackage.collectConstants: time 0.000211/0.03886, allocations: 216 kB / 398.5 MB, free: 13.9 MB / 378.7 MB
Notification: Performance of NFFlatten.collectFunctions: time 0.003786/0.04265, allocations: 2.546 MB / 401.1 MB, free: 11.35 MB / 378.7 MB
Notification: Performance of NFScalarize.scalarize: time 0.0002824/0.04293, allocations: 0.5257 MB / 401.6 MB, free: 10.82 MB / 378.7 MB
Notification: Performance of NFVerifyModel.verify: time 0.0004871/0.04342, allocations: 0.7874 MB / 402.4 MB, free: 10.03 MB / 378.7 MB
Notification: Performance of NFConvertDAE.convert: time 0.004631/0.04805, allocations: 4.751 MB / 407.1 MB, free: 5.262 MB / 378.7 MB
Notification: Performance of FrontEnd - DAE generated: time 3.677e-06/0.04805, allocations: 7.938 kB / 407.1 MB, free: 5.254 MB / 378.7 MB
Notification: Performance of FrontEnd: time 8.32e-07/0.04805, allocations: 0 / 407.1 MB, free: 5.254 MB / 378.7 MB
Notification: Performance of Transformations before backend: time 1.579e-05/0.04807, allocations: 0 / 407.1 MB, free: 5.254 MB / 378.7 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 446
 * Number of variables: 446
Notification: Performance of Generate backend data structure: time 0.002799/0.05087, allocations: 2.748 MB / 409.9 MB, free: 2.453 MB / 378.7 MB
Notification: Performance of prepare preOptimizeDAE: time 3.448e-05/0.0509, allocations: 8.031 kB / 409.9 MB, free: 2.445 MB / 378.7 MB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.001135/0.05204, allocations: 0.6847 MB / 410.6 MB, free: 1.758 MB / 378.7 MB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.0009008/0.05294, allocations: 0.9196 MB / 411.5 MB, free: 0.8086 MB / 378.7 MB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.0001249/0.05306, allocations: 242.9 kB / 411.7 MB, free: 0.5469 MB / 378.7 MB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.0001765/0.05324, allocations: 184.3 kB / 411.9 MB, free: 376 kB / 378.7 MB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.001697/0.05494, allocations: 1.52 MB / 413.4 MB, free: 14.8 MB / 394.7 MB
Notification: Performance of preOpt findStateOrder (simulation): time 2.324e-05/0.05496, allocations: 192 / 413.4 MB, free: 14.8 MB / 394.7 MB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.0001053/0.05507, allocations: 76.12 kB / 413.5 MB, free: 14.73 MB / 394.7 MB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 2.236e-05/0.05509, allocations: 40 kB / 413.5 MB, free: 14.69 MB / 394.7 MB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.001384/0.05647, allocations: 1.467 MB / 415 MB, free: 13.22 MB / 394.7 MB
Warning: The model contains alias variables with redundant start and/or conflicting nominal values. It is recommended to resolve the conflicts, because otherwise the system could be hard to solve. To print the conflicting alias sets and the chosen candidates please use -d=aliasConflicts.
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.005055/0.06153, allocations: 4.999 MB / 420 MB, free: 8.105 MB / 394.7 MB
Notification: Performance of preOpt comSubExp (simulation): time 0.002592/0.06412, allocations: 2.539 MB / 422.5 MB, free: 5.555 MB / 394.7 MB
Notification: Performance of preOpt resolveLoops (simulation): time 0.0004414/0.06456, allocations: 493 kB / 423 MB, free: 5.066 MB / 394.7 MB
Notification: Performance of preOpt evalFunc (simulation): time 0.004589/0.06915, allocations: 4.303 MB / 427.3 MB, free: 0.7773 MB / 394.7 MB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 2.907e-05/0.06918, allocations: 46.7 kB / 427.4 MB, free: 0.7188 MB / 394.7 MB
Notification: Performance of pre-optimization done (n=144): time 2.535e-06/0.06918, allocations: 0 / 427.4 MB, free: 0.7188 MB / 394.7 MB
Notification: Performance of matching and sorting (n=180): time 0.01517/0.08435, allocations: 5.145 MB / 432.5 MB, free: 11.49 MB / 410.7 MB
Notification: Performance of inlineWhenForInitialization (initialization): time 4.618e-05/0.0844, allocations: 99.11 kB / 432.6 MB, free: 11.38 MB / 410.7 MB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0006299/0.08503, allocations: 0.7679 MB / 433.4 MB, free: 10.59 MB / 410.7 MB
Notification: Performance of collectPreVariables (initialization): time 8.27e-05/0.08511, allocations: 53.7 kB / 433.4 MB, free: 10.54 MB / 410.7 MB
Notification: Performance of collectInitialEqns (initialization): time 0.0004428/0.08556, allocations: 0.8196 MB / 434.3 MB, free: 9.703 MB / 410.7 MB
Notification: Performance of collectInitialBindings (initialization): time 0.0006658/0.08622, allocations: 0.639 MB / 434.9 MB, free: 9.059 MB / 410.7 MB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.0004308/0.08665, allocations: 373 kB / 435.3 MB, free: 8.684 MB / 410.7 MB
Notification: Performance of setup shared object (initialization): time 0.0001672/0.08682, allocations: 0.5432 MB / 435.8 MB, free: 8.133 MB / 410.7 MB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.000457/0.08728, allocations: 303.8 kB / 436.1 MB, free: 7.832 MB / 410.7 MB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.0008397/0.08812, allocations: 1.022 MB / 437.1 MB, free: 6.504 MB / 410.7 MB
Notification: Performance of analyzeInitialSystem (initialization): time 0.00146/0.08958, allocations: 1.505 MB / 438.6 MB, free: 4.703 MB / 410.7 MB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 8.316e-06/0.08958, allocations: 4 kB / 438.6 MB, free: 4.699 MB / 410.7 MB
Notification: Performance of matching and sorting (n=258) (initialization): time 0.003885/0.09347, allocations: 1.893 MB / 440.5 MB, free: 2.785 MB / 410.7 MB
Notification: Performance of prepare postOptimizeDAE: time 2.198e-05/0.09349, allocations: 8 kB / 440.5 MB, free: 2.777 MB / 410.7 MB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 1.809e-05/0.09351, allocations: 16 kB / 440.6 MB, free: 2.762 MB / 410.7 MB
Notification: Performance of postOpt tearingSystem (initialization): time 0.003162/0.09667, allocations: 0.6546 MB / 441.2 MB, free: 2.09 MB / 410.7 MB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.001777/0.09845, allocations: 0.5227 MB / 441.7 MB, free: 1.566 MB / 410.7 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 0.1325/0.2309, allocations: 8.597 MB / 450.3 MB, free: 109.7 MB / 410.7 MB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0009246/0.2318, allocations: 62.45 kB / 450.4 MB, free: 109.7 MB / 410.7 MB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.0001053/0.232, allocations: 84.16 kB / 450.5 MB, free: 109.7 MB / 410.7 MB
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 70
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (246):
 * Single equations (assignments): 242
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 4
 * Mixed (continuous/discrete) equation systems: 0
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 2 systems
   {(1,3,100.0%), (1,3,100.0%)}
 * Non-linear torn systems (#iteration vars, #inner vars): 2 systems
   {(1,3), (1,3)}
Notification: Performance of prepare postOptimizeDAE: time 0.0004077/0.2324, allocations: 281.4 kB / 450.7 MB, free: 109.5 MB / 410.7 MB
Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0002444/0.2326, allocations: 192.2 kB / 450.9 MB, free: 109.5 MB / 410.7 MB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.002815/0.2354, allocations: 1.843 MB / 452.8 MB, free: 109.4 MB / 410.7 MB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 1.031e-05/0.2354, allocations: 28.42 kB / 452.8 MB, free: 109.4 MB / 410.7 MB
Notification: Performance of postOpt constantLinearSystem (simulation): time 6.211e-06/0.2354, allocations: 0 / 452.8 MB, free: 109.4 MB / 410.7 MB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 9.738e-06/0.2354, allocations: 6.797 kB / 452.8 MB, free: 109.4 MB / 410.7 MB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.00392/0.2394, allocations: 2.837 MB / 455.6 MB, free: 108.9 MB / 410.7 MB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 5.2e-06/0.2394, allocations: 3.781 kB / 455.7 MB, free: 108.9 MB / 410.7 MB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0008682/0.2402, allocations: 387.9 kB / 456 MB, free: 108.9 MB / 410.7 MB
Notification: Performance of postOpt tearingSystem (simulation): time 0.002243/0.2425, allocations: 0.6423 MB / 456.7 MB, free: 108.8 MB / 410.7 MB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 8.886e-05/0.2426, allocations: 58.75 kB / 456.7 MB, free: 108.8 MB / 410.7 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 0.003644/0.2462, allocations: 8.435 MB / 465.2 MB, free: 101.2 MB / 410.7 MB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 7.91e-07/0.2462, allocations: 0 / 465.2 MB, free: 101.2 MB / 410.7 MB
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.002863/0.2491, allocations: 2.208 MB / 467.4 MB, free: 100.5 MB / 410.7 MB
Notification: Performance of postOpt removeConstants (simulation): time 0.0001139/0.2492, allocations: 118.8 kB / 467.5 MB, free: 100.4 MB / 410.7 MB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 9.651e-05/0.2493, allocations: 33.16 kB / 467.5 MB, free: 100.4 MB / 410.7 MB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0003594/0.2496, allocations: 33.78 kB / 467.6 MB, free: 100.4 MB / 410.7 MB
Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0001782/0.2498, allocations: 148.8 kB / 467.7 MB, free: 100.4 MB / 410.7 MB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 6.734e-05/0.2499, allocations: 52.88 kB / 467.8 MB, free: 100.4 MB / 410.7 MB
Notification: Performance of sorting global known variables: time 0.0002184/0.2501, allocations: 433.2 kB / 468.2 MB, free: 100.2 MB / 410.7 MB
Notification: Performance of sort global known variables: time 6e-08/0.2501, allocations: 0 / 468.2 MB, free: 100.2 MB / 410.7 MB
Notification: Performance of remove unused functions: time 0.001883/0.252, allocations: 1.066 MB / 469.2 MB, free: 100.1 MB / 410.7 MB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 2
 * Number of states: 8 (solution.temperature,H3O.logn,OH.logn,H2O.logn,solution1.temperature,H_.logn,OH_.logn,H2O_.logn)
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (178):
 * Single equations (assignments): 174
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 4
 * Mixed (continuous/discrete) equation systems: 0
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 2 systems
   {(1,3,100.0%), (1,3,100.0%)}
 * Non-linear torn systems (#iteration vars, #inner vars): 2 systems
   {(1,3), (1,3)}
Notification: Performance of Backend phase and start with SimCode phase: time 0.001244/0.2532, allocations: 1.28 MB / 470.5 MB, free: 99.96 MB / 410.7 MB
Notification: Performance of simCode: created initialization part: time 0.001339/0.2546, allocations: 1.87 MB / 472.4 MB, free: 99.16 MB / 410.7 MB
Notification: Performance of simCode: created event and clocks part: time 2.174e-06/0.2546, allocations: 0 / 472.4 MB, free: 99.16 MB / 410.7 MB
Notification: Performance of simCode: created simulation system equations: time 0.0007127/0.2553, allocations: 1.327 MB / 473.7 MB, free: 98.41 MB / 410.7 MB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0007658/0.2561, allocations: 341.5 kB / 474 MB, free: 98.28 MB / 410.7 MB
Error: Error parsing unit kDa: Unit not found
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.002817/0.2589, allocations: 2.816 MB / 476.9 MB, free: 96.89 MB / 410.7 MB
Notification: Performance of simCode: some other stuff during SimCode phase: time 0.000173/0.259, allocations: 312.7 kB / 477.2 MB, free: 96.79 MB / 410.7 MB
Notification: Performance of simCode: alias equations: time 0.0006454/0.2597, allocations: 339.3 kB / 477.5 MB, free: 96.67 MB / 410.7 MB
Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0006384/0.2603, allocations: 0.5282 MB / 478 MB, free: 96.58 MB / 410.7 MB
Notification: Performance of SimCode: time 1.133e-06/0.2603, allocations: 0 / 478 MB, free: 96.58 MB / 410.7 MB
Notification: Performance of Templates: time 0.0378/0.2981, allocations: 44.13 MB / 0.5099 GB, free: 70.16 MB / 410.7 MB
"
[Timeout remaining time 660]
make -j1 -f Chemical_Chemical.Obsolete.Examples.AcidBase.WaterSelfIonization.makefile [Timeout 660]
(rm -f Chemical_Chemical.Obsolete.Examples.AcidBase.WaterSelfIonization.pipe ; mkfifo Chemical_Chemical.Obsolete.Examples.AcidBase.WaterSelfIonization.pipe ; head -c 1048576 < Chemical_Chemical.Obsolete.Examples.AcidBase.WaterSelfIonization.pipe >> ../files/Chemical_Chemical.Obsolete.Examples.AcidBase.WaterSelfIonization.sim & ./Chemical_Chemical.Obsolete.Examples.AcidBase.WaterSelfIonization -abortSlowSimulation -alarm=240  -lv LOG_STATS > Chemical_Chemical.Obsolete.Examples.AcidBase.WaterSelfIonization.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 3.87246587080881]