Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr BioChem_BioChem.Examples.GlucoseInsulinModel.GlucoseInsulinModel.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001063/0.001063, allocations: 81.95 kB / 19.87 MB, free: 4.617 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001464/0.001464, allocations: 173.7 kB / 23.28 MB, free: 1.219 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.008/1.008, allocations: 177.1 MB / 203.7 MB, free: 5.508 MB / 186.7 MB " [Timeout remaining time 179] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/BioChem 1.1.3/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/BioChem 1.1.3/package.mo): time 0.03965/0.03965, allocations: 9.549 MB / 269.8 MB, free: 3.805 MB / 250.7 MB " [Timeout remaining time 180] Using package BioChem with version 1.1.3 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/BioChem 1.1.3/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: translateModel(BioChem.Examples.GlucoseInsulinModel.GlucoseInsulinModel,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2100,variableFilter="",fileNamePrefix="BioChem_BioChem.Examples.GlucoseInsulinModel.GlucoseInsulinModel") translateModel(BioChem.Examples.GlucoseInsulinModel.GlucoseInsulinModel,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2100,variableFilter="",fileNamePrefix="BioChem_BioChem.Examples.GlucoseInsulinModel.GlucoseInsulinModel") [Timeout 660] "Notification: Performance of FrontEnd - loaded program: time 2.465e-06/2.465e-06, allocations: 0 / 342.5 MB, free: 7.359 MB / 266.7 MB Notification: Performance of FrontEnd - Absyn->SCode: time 1.037e-05/1.284e-05, allocations: 6.312 kB / 342.5 MB, free: 7.352 MB / 266.7 MB Notification: Performance of NFInst.instantiate(BioChem.Examples.GlucoseInsulinModel.GlucoseInsulinModel): time 0.006674/0.006687, allocations: 8.914 MB / 351.4 MB, free: 14.41 MB / 282.7 MB Notification: Performance of NFInst.instExpressions: time 0.004068/0.01075, allocations: 3.425 MB / 354.8 MB, free: 10.97 MB / 282.7 MB Notification: Performance of NFInst.updateImplicitVariability: time 0.0006488/0.0114, allocations: 115.9 kB / 354.9 MB, free: 10.86 MB / 282.7 MB Notification: Performance of NFTyping.typeComponents: time 0.0004861/0.01189, allocations: 381 kB / 355.3 MB, free: 10.48 MB / 282.7 MB Notification: Performance of NFTyping.typeBindings: time 0.0008228/0.01271, allocations: 0.5609 MB / 355.8 MB, free: 9.914 MB / 282.7 MB Notification: Performance of NFTyping.typeClassSections: time 0.0008169/0.01353, allocations: 0.5696 MB / 356.4 MB, free: 9.344 MB / 282.7 MB Notification: Performance of NFFlatten.flatten: time 0.001785/0.01532, allocations: 2.417 MB / 358.8 MB, free: 6.914 MB / 282.7 MB Notification: Performance of NFFlatten.resolveConnections: time 0.0009033/0.01622, allocations: 0.8115 MB / 359.6 MB, free: 6.051 MB / 282.7 MB Notification: Performance of NFEvalConstants.evaluate: time 0.001338/0.01756, allocations: 1.548 MB / 361.2 MB, free: 4.5 MB / 282.7 MB Notification: Performance of NFSimplifyModel.simplify: time 0.0006255/0.01818, allocations: 0.8101 MB / 362 MB, free: 3.688 MB / 282.7 MB Notification: Performance of NFPackage.collectConstants: time 0.0002301/0.01841, allocations: 320 kB / 362.3 MB, free: 3.375 MB / 282.7 MB Notification: Performance of NFFlatten.collectFunctions: time 0.0002843/0.0187, allocations: 316 kB / 362.6 MB, free: 3.066 MB / 282.7 MB Notification: Performance of NFScalarize.scalarize: time 0.0002806/0.01898, allocations: 0.5997 MB / 363.2 MB, free: 2.465 MB / 282.7 MB Notification: Performance of NFVerifyModel.verify: time 0.0005228/0.0195, allocations: 0.8732 MB / 364.1 MB, free: 1.59 MB / 282.7 MB Notification: Performance of NFConvertDAE.convert: time 0.001438/0.02094, allocations: 1.759 MB / 365.9 MB, free: 15.82 MB / 298.7 MB Notification: Performance of FrontEnd - DAE generated: time 2.605e-06/0.02094, allocations: 0 / 365.9 MB, free: 15.82 MB / 298.7 MB Notification: Performance of FrontEnd: time 1.403e-06/0.02094, allocations: 0 / 365.9 MB, free: 15.82 MB / 298.7 MB Notification: Performance of Transformations before backend: time 1.41e-05/0.02095, allocations: 4 kB / 365.9 MB, free: 15.82 MB / 298.7 MB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 687 * Number of variables: 687 Notification: Performance of Generate backend data structure: time 0.002149/0.0231, allocations: 2.425 MB / 368.3 MB, free: 13.35 MB / 298.7 MB Notification: Performance of prepare preOptimizeDAE: time 4.38e-05/0.02315, allocations: 8.031 kB / 368.3 MB, free: 13.34 MB / 298.7 MB Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0004728/0.02362, allocations: 471.4 kB / 368.7 MB, free: 12.88 MB / 298.7 MB Notification: Performance of preOpt evaluateParameters (simulation): time 0.0007056/0.02433, allocations: 0.7274 MB / 369.5 MB, free: 12.12 MB / 298.7 MB Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.0001694/0.0245, allocations: 312.8 kB / 369.8 MB, free: 11.79 MB / 298.7 MB Notification: Performance of preOpt expandDerOperator (simulation): time 0.0002079/0.0247, allocations: 280.2 kB / 370.1 MB, free: 11.52 MB / 298.7 MB Notification: Performance of preOpt clockPartitioning (simulation): time 0.001561/0.02627, allocations: 1.716 MB / 371.8 MB, free: 9.695 MB / 298.7 MB Notification: Performance of preOpt findStateOrder (simulation): time 4.491e-05/0.02631, allocations: 15.88 kB / 371.8 MB, free: 9.68 MB / 298.7 MB Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.0001113/0.02642, allocations: 108 kB / 371.9 MB, free: 9.574 MB / 298.7 MB Notification: Performance of preOpt inlineArrayEqn (simulation): time 3.431e-05/0.02646, allocations: 64 kB / 372 MB, free: 9.512 MB / 298.7 MB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0008377/0.02729, allocations: 0.7299 MB / 372.7 MB, free: 8.75 MB / 298.7 MB Warning: The model contains alias variables with redundant start and/or conflicting nominal values. It is recommended to resolve the conflicts, because otherwise the system could be hard to solve. To print the conflicting alias sets and the chosen candidates please use -d=aliasConflicts. Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.006611/0.0339, allocations: 7.81 MB / 380.5 MB, free: 0.6211 MB / 298.7 MB Notification: Performance of preOpt comSubExp (simulation): time 0.0009214/0.03483, allocations: 0.9485 MB / 381.4 MB, free: 15.61 MB / 314.7 MB Notification: Performance of preOpt resolveLoops (simulation): time 0.0002918/0.03512, allocations: 293.2 kB / 381.7 MB, free: 15.31 MB / 314.7 MB Notification: Performance of preOpt evalFunc (simulation): time 5.401e-05/0.03517, allocations: 25.31 kB / 381.8 MB, free: 15.29 MB / 314.7 MB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 3.074e-05/0.0352, allocations: 58.62 kB / 381.8 MB, free: 15.22 MB / 314.7 MB Notification: Performance of pre-optimization done (n=139): time 2.504e-06/0.03521, allocations: 0 / 381.8 MB, free: 15.22 MB / 314.7 MB Notification: Performance of matching and sorting (n=171): time 0.00604/0.04125, allocations: 3.918 MB / 385.7 MB, free: 11.31 MB / 314.7 MB Notification: Performance of inlineWhenForInitialization (initialization): time 8.372e-05/0.04133, allocations: 179.5 kB / 385.9 MB, free: 11.1 MB / 314.7 MB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0004321/0.04176, allocations: 0.529 MB / 386.4 MB, free: 10.55 MB / 314.7 MB Notification: Performance of collectPreVariables (initialization): time 5.608e-05/0.04182, allocations: 49.7 kB / 386.5 MB, free: 10.5 MB / 314.7 MB Notification: Performance of collectInitialEqns (initialization): time 0.0003828/0.0422, allocations: 1.035 MB / 387.5 MB, free: 9.453 MB / 314.7 MB Notification: Performance of collectInitialBindings (initialization): time 0.0003108/0.04251, allocations: 0.6545 MB / 388.2 MB, free: 8.793 MB / 314.7 MB Notification: Performance of simplifyInitialFunctions (initialization): time 0.00032/0.04283, allocations: 365.9 kB / 388.5 MB, free: 8.43 MB / 314.7 MB Notification: Performance of setup shared object (initialization): time 0.0001168/0.04295, allocations: 0.4887 MB / 389 MB, free: 7.934 MB / 314.7 MB Notification: Performance of preBalanceInitialSystem (initialization): time 0.0003619/0.04331, allocations: 356.4 kB / 389.4 MB, free: 7.578 MB / 314.7 MB Notification: Performance of partitionIndependentBlocks (initialization): time 0.000697/0.04401, allocations: 1.113 MB / 390.5 MB, free: 6.094 MB / 314.7 MB Notification: Performance of analyzeInitialSystem (initialization): time 0.001384/0.04539, allocations: 1.847 MB / 392.3 MB, free: 3.887 MB / 314.7 MB Notification: Performance of solveInitialSystemEqSystem (initialization): time 7.223e-06/0.0454, allocations: 4 kB / 392.3 MB, free: 3.883 MB / 314.7 MB Notification: Performance of matching and sorting (n=291) (initialization): time 0.001345/0.04674, allocations: 1.481 MB / 393.8 MB, free: 2.395 MB / 314.7 MB Notification: Performance of prepare postOptimizeDAE: time 2.119e-05/0.04676, allocations: 19.98 kB / 393.8 MB, free: 2.375 MB / 314.7 MB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 1.565e-05/0.04678, allocations: 16 kB / 393.8 MB, free: 2.359 MB / 314.7 MB Notification: Performance of postOpt tearingSystem (initialization): time 2.386e-05/0.0468, allocations: 32 kB / 393.9 MB, free: 2.328 MB / 314.7 MB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.001225/0.04803, allocations: 0.64 MB / 394.5 MB, free: 1.688 MB / 314.7 MB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 2.555e-05/0.04805, allocations: 43.86 kB / 394.6 MB, free: 1.645 MB / 314.7 MB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0003663/0.04842, allocations: 75.98 kB / 394.6 MB, free: 1.57 MB / 314.7 MB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 6.905e-05/0.04849, allocations: 71.94 kB / 394.7 MB, free: 1.5 MB / 314.7 MB Warning: Assuming fixed start value for the following 41 variables: V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer ) \"Compartment volume\" type: Real adiposeTissue1.V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer ) \"Compartment volume\" type: Real GlucoseRenalExcretion.V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer ) \"Compartment volume\" type: Real GlucoseRenalExcretion.E.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer ) \"Number of moles of substance in pool (mol)\" type: Real UtilizationMuscleTissue.V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer ) \"Compartment volume\" type: Real UtilizationMuscleTissue.U_idm.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer ) \"Number of moles of substance in pool (mol)\" type: Real GastroIntestinalTract.V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer ) \"Compartment volume\" type: Real GastroIntestinalTract.GlucoseIntake.c:VARIABLE(min = 0.0 start = 78000.0 unit = \"mol/l\" fixed = true stateSelect=StateSelect.prefer ) \"Current concentration of substance (mM)\" type: Real TissueGlucose.V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer ) \"Compartment volume\" type: Real PlasmaGlucose.V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer ) \"Compartment volume\" type: Real PlasmaInsulin.V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer ) \"Compartment volume\" type: Real LiverInsulin.V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer ) \"Compartment volume\" type: Real EndogenousGlucoseProduction.V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer ) \"Compartment volume\" type: Real EndogenousGlucoseProduction.I_po.c:VARIABLE(min = 0.0 start = 3.6 unit = \"mol/l\" fixed = true stateSelect=StateSelect.prefer ) \"Current concentration of substance (mM)\" type: Real BetaCell.V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer ) \"Compartment volume\" type: Real BetaCell.Y.c:VARIABLE(min = -1e60 start = 0.0 unit = \"mol/l\" fixed = true stateSelect=StateSelect.prefer ) \"Current concentration of substance (mM)\" type: Real adiposeTissue1.adipocyte1.V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer ) \"Compartment volume\" type: Real adiposeTissue1.adipocyte1.IR.c:VARIABLE(min = 0.0 start = 2.34e12 unit = \"mol/l\" fixed = true stateSelect=StateSelect.prefer ) \"Current concentration of substance (mM)\" type: Real adiposeTissue1.adipocyte1.IRS1.c:VARIABLE(min = 0.0 start = 1.61e10 unit = \"mol/l\" fixed = true stateSelect=StateSelect.prefer ) \"Current concentration of substance (mM)\" type: Real adiposeTissue1.adipocyte1.PKB.c:VARIABLE(min = 0.0 start = 1.68e7 unit = \"mol/l\" fixed = true stateSelect=StateSelect.prefer ) \"Current concentration of substance (mM)\" type: Real adiposeTissue1.adipocyte1.GLUT4_CYTOSOL.c:VARIABLE(min = 0.0 start = 5.8e8 unit = \"mol/l\" fixed = true stateSelect=StateSelect.prefer ) \"Current concentration of substance (mM)\" type: Real adiposeTissue1.adipocyte1.IR_insulin.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer ) \"Number of moles of substance in pool (mol)\" type: Real adiposeTissue1.adipocyte1.GLUT4_MEMBRANE.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer ) \"Number of moles of substance in pool (mol)\" type: Real adiposeTissue1.adipocyte1.GlucoseUtilization.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer ) \"Number of moles of substance in pool (mol)\" type: Real adiposeTissue1.adipocyte1.PKB_P.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer ) \"Number of moles of substance in pool (mol)\" type: Real adiposeTissue1.adipocyte1.IRS1_P.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer ) \"Number of moles of substance in pool (mol)\" type: Real BetaCell.G_p.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer ) \"Number of moles of substance in pool (mol)\" type: Real EndogenousGlucoseProduction.End.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer ) \"Number of moles of substance in pool (mol)\" type: Real EndogenousGlucoseProduction.I_d.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer ) \"Number of moles of substance in pool (mol)\" type: Real EndogenousGlucoseProduction.I_1.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer ) \"Number of moles of substance in pool (mol)\" type: Real LiverInsulin.Deg.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer ) \"Number of moles of substance in pool (mol)\" type: Real LiverInsulin.I_l.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer ) \"Number of moles of substance in pool (mol)\" type: Real UtilizationMuscleTissue.UtilizationReaction.X:VARIABLE(fixed = true ) \"Insulin action on glucose utilization, signed deviation from basal\" type: Real PlasmaInsulin.Deg.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer ) \"Number of moles of substance in pool (mol)\" type: Real PlasmaInsulin.I_p.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer ) \"Number of moles of substance in pool (mol)\" type: Real PlasmaGlucose.U_ii.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer ) \"Number of moles of substance in pool (mol)\" type: Real TissueGlucose.G_t.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer ) \"Number of moles of substance in pool (mol)\" type: Real GastroIntestinalTract.End.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer ) \"Number of moles of substance in pool (mol)\" type: Real GastroIntestinalTract.Q_sto1.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer ) \"Number of moles of substance in pool (mol)\" type: Real GastroIntestinalTract.Q_gut.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer ) \"Number of moles of substance in pool (mol)\" type: Real GastroIntestinalTract.Q_sto2.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer ) \"Number of moles of substance in pool (mol)\" type: Real Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 86 * Number of states: 0 () * Number of discrete variables: 0 () * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (291): * Single equations (assignments): 291 * Array equations: 0 * Algorithm blocks: 0 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of prepare postOptimizeDAE: time 0.0005235/0.04901, allocations: 449.5 kB / 395.1 MB, free: 1.074 MB / 314.7 MB Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0001792/0.04919, allocations: 159.3 kB / 395.3 MB, free: 0.918 MB / 314.7 MB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0009464/0.05014, allocations: 0.9477 MB / 396.2 MB, free: 15.96 MB / 330.7 MB Notification: Performance of postOpt inlineArrayEqn (simulation): time 9.869e-06/0.05015, allocations: 20 kB / 396.3 MB, free: 15.94 MB / 330.7 MB Notification: Performance of postOpt constantLinearSystem (simulation): time 4.398e-06/0.05015, allocations: 3.938 kB / 396.3 MB, free: 15.94 MB / 330.7 MB Notification: Performance of postOpt simplifysemiLinear (simulation): time 1.293e-05/0.05017, allocations: 11.97 kB / 396.3 MB, free: 15.93 MB / 330.7 MB Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.002863/0.05303, allocations: 2.288 MB / 398.6 MB, free: 13.59 MB / 330.7 MB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 5.651e-06/0.05303, allocations: 8 kB / 398.6 MB, free: 13.58 MB / 330.7 MB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.001144/0.05418, allocations: 471.5 kB / 399 MB, free: 13.12 MB / 330.7 MB Notification: Performance of postOpt tearingSystem (simulation): time 7.784e-06/0.05419, allocations: 7.984 kB / 399 MB, free: 13.11 MB / 330.7 MB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 7.707e-05/0.05426, allocations: 59.97 kB / 399.1 MB, free: 13.05 MB / 330.7 MB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 7.224e-06/0.05427, allocations: 11.98 kB / 399.1 MB, free: 13.04 MB / 330.7 MB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 2.695e-06/0.05427, allocations: 7.938 kB / 399.1 MB, free: 13.04 MB / 330.7 MB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.001518/0.05579, allocations: 1.974 MB / 401.1 MB, free: 11.03 MB / 330.7 MB Notification: Performance of postOpt removeConstants (simulation): time 6.128e-05/0.05585, allocations: 83.38 kB / 401.2 MB, free: 10.95 MB / 330.7 MB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 9.352e-05/0.05595, allocations: 44 kB / 401.2 MB, free: 10.91 MB / 330.7 MB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0003428/0.05629, allocations: 36 kB / 401.3 MB, free: 10.87 MB / 330.7 MB Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0001243/0.05641, allocations: 125 kB / 401.4 MB, free: 10.75 MB / 330.7 MB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 4.934e-05/0.05646, allocations: 43.95 kB / 401.4 MB, free: 10.7 MB / 330.7 MB Notification: Performance of sorting global known variables: time 0.0001506/0.05661, allocations: 282.7 kB / 401.7 MB, free: 10.43 MB / 330.7 MB Notification: Performance of sort global known variables: time 6e-08/0.05661, allocations: 0 / 401.7 MB, free: 10.43 MB / 330.7 MB Notification: Performance of remove unused functions: time 0.0007673/0.05738, allocations: 424 kB / 402.1 MB, free: 10.01 MB / 330.7 MB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 7 * Number of states: 41 (GastroIntestinalTract.V,GastroIntestinalTract.Q_sto2.n,GastroIntestinalTract.Q_gut.n,GastroIntestinalTract.Q_sto1.n,GastroIntestinalTract.GlucoseIntake.c,GastroIntestinalTract.End.n,TissueGlucose.V,TissueGlucose.G_t.n,PlasmaGlucose.V,PlasmaGlucose.U_ii.n,PlasmaInsulin.V,PlasmaInsulin.I_p.n,PlasmaInsulin.Deg.n,UtilizationMuscleTissue.UtilizationReaction.X,LiverInsulin.V,LiverInsulin.I_l.n,LiverInsulin.Deg.n,EndogenousGlucoseProduction.V,EndogenousGlucoseProduction.I_1.n,EndogenousGlucoseProduction.I_d.n,EndogenousGlucoseProduction.End.n,EndogenousGlucoseProduction.I_po.c,BetaCell.V,BetaCell.G_p.n,BetaCell.Y.c,adiposeTissue1.adipocyte1.V,adiposeTissue1.adipocyte1.IR.c,adiposeTissue1.adipocyte1.IRS1.c,adiposeTissue1.adipocyte1.IRS1_P.n,adiposeTissue1.adipocyte1.PKB.c,adiposeTissue1.adipocyte1.PKB_P.n,adiposeTissue1.adipocyte1.GlucoseUtilization.n,adiposeTissue1.adipocyte1.GLUT4_MEMBRANE.n,adiposeTissue1.adipocyte1.GLUT4_CYTOSOL.c,adiposeTissue1.adipocyte1.IR_insulin.n,V,adiposeTissue1.V,UtilizationMuscleTissue.V,UtilizationMuscleTissue.U_idm.n,GlucoseRenalExcretion.V,GlucoseRenalExcretion.E.n) * Number of discrete variables: 0 () * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (173): * Single equations (assignments): 173 * Array equations: 0 * Algorithm blocks: 0 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of Backend phase and start with SimCode phase: time 0.0001497/0.05753, allocations: 164.2 kB / 402.3 MB, free: 9.848 MB / 330.7 MB Notification: Performance of simCode: created initialization part: time 0.0009372/0.05847, allocations: 1.02 MB / 403.3 MB, free: 8.824 MB / 330.7 MB Notification: Performance of simCode: created event and clocks part: time 3.917e-06/0.05847, allocations: 4 kB / 403.3 MB, free: 8.82 MB / 330.7 MB Notification: Performance of simCode: created simulation system equations: time 0.0004333/0.0589, allocations: 0.4885 MB / 403.8 MB, free: 8.332 MB / 330.7 MB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0007073/0.05961, allocations: 234.2 kB / 404 MB, free: 8.113 MB / 330.7 MB Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.003892/0.0635, allocations: 4.103 MB / 408.1 MB, free: 3.934 MB / 330.7 MB Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0002276/0.06373, allocations: 329.8 kB / 408.4 MB, free: 3.578 MB / 330.7 MB Notification: Performance of simCode: alias equations: time 0.0004175/0.06415, allocations: 165.5 kB / 408.6 MB, free: 3.414 MB / 330.7 MB Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0005623/0.06471, allocations: 386 kB / 409 MB, free: 3.035 MB / 330.7 MB Notification: Performance of SimCode: time 4.31e-07/0.06471, allocations: 4 kB / 409 MB, free: 3.031 MB / 330.7 MB Notification: Performance of Templates: time 0.1258/0.1905, allocations: 17.51 MB / 426.5 MB, free: 68.41 MB / 330.7 MB " [Timeout remaining time 660] make -j1 -f BioChem_BioChem.Examples.GlucoseInsulinModel.GlucoseInsulinModel.makefile [Timeout 660] (rm -f BioChem_BioChem.Examples.GlucoseInsulinModel.GlucoseInsulinModel.pipe ; mkfifo BioChem_BioChem.Examples.GlucoseInsulinModel.GlucoseInsulinModel.pipe ; head -c 1048576 < BioChem_BioChem.Examples.GlucoseInsulinModel.GlucoseInsulinModel.pipe >> ../files/BioChem_BioChem.Examples.GlucoseInsulinModel.GlucoseInsulinModel.sim & ./BioChem_BioChem.Examples.GlucoseInsulinModel.GlucoseInsulinModel -abortSlowSimulation -alarm=240 -lv LOG_STATS > BioChem_BioChem.Examples.GlucoseInsulinModel.GlucoseInsulinModel.pipe 2>&1) [Timeout 240] [Calling sys.exit(0), Time elapsed: 3.5040838047862053]