Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001416/0.001416, allocations: 93.06 kB / 19.65 MB, free: 272 kB / 13.93 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.00165/0.00165, allocations: 173 kB / 23.02 MB, free: 1.543 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.8848/0.8848, allocations: 177.1 MB / 203.4 MB, free: 5.66 MB / 186.7 MB " [Timeout remaining time 179] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180] "[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory. Missing names are: Paracetamol_Experiment Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.47/1.47, allocations: 273.5 MB / 0.5209 GB, free: 14.72 MB / 458.7 MB " [Timeout remaining time 178] Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: translateModel(Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body,tolerance=1e-06,outputFormat="empty",numberOfIntervals=499,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body") translateModel(Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body,tolerance=1e-06,outputFormat="empty",numberOfIntervals=499,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body") [Timeout 660] "Notification: Performance of FrontEnd - loaded program: time 1.283e-06/1.283e-06, allocations: 0 / 0.647 GB, free: 38.59 MB / 0.5262 GB Notification: Performance of FrontEnd - Absyn->SCode: time 2.301e-05/2.43e-05, allocations: 3.734 kB / 0.647 GB, free: 38.59 MB / 0.5262 GB Notification: Performance of NFInst.instantiate(Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body): time 0.007764/0.007789, allocations: 11.75 MB / 0.6585 GB, free: 30.91 MB / 0.5262 GB Notification: Performance of NFInst.instExpressions: time 0.004481/0.01227, allocations: 2.481 MB / 0.6609 GB, free: 29.18 MB / 0.5262 GB Notification: Performance of NFInst.updateImplicitVariability: time 0.001237/0.01351, allocations: 23.5 kB / 0.661 GB, free: 29.18 MB / 0.5262 GB Notification: Performance of NFTyping.typeComponents: time 0.0005699/0.01408, allocations: 302.7 kB / 0.6613 GB, free: 29.01 MB / 0.5262 GB Notification: Performance of NFTyping.typeBindings: time 0.001505/0.01558, allocations: 0.7869 MB / 0.662 GB, free: 28.43 MB / 0.5262 GB Notification: Performance of NFTyping.typeClassSections: time 0.001014/0.0166, allocations: 0.594 MB / 0.6626 GB, free: 28.08 MB / 0.5262 GB Notification: Performance of NFFlatten.flatten: time 0.002342/0.01894, allocations: 2.87 MB / 0.6654 GB, free: 26.54 MB / 0.5262 GB Notification: Performance of NFFlatten.resolveConnections: time 0.002637/0.02157, allocations: 3.223 MB / 0.6686 GB, free: 24.61 MB / 0.5262 GB Notification: Performance of NFEvalConstants.evaluate: time 0.003614/0.02519, allocations: 2.563 MB / 0.6711 GB, free: 23.55 MB / 0.5262 GB Notification: Performance of NFSimplifyModel.simplify: time 0.003365/0.02855, allocations: 1.975 MB / 0.673 GB, free: 23.02 MB / 0.5262 GB Notification: Performance of NFPackage.collectConstants: time 0.001361/0.02992, allocations: 429.9 kB / 0.6734 GB, free: 23.02 MB / 0.5262 GB Notification: Performance of NFFlatten.collectFunctions: time 0.0009644/0.03088, allocations: 426.8 kB / 0.6738 GB, free: 23.02 MB / 0.5262 GB Notification: Performance of NFScalarize.scalarize: time 0.00054/0.03142, allocations: 0.9244 MB / 0.6747 GB, free: 22.42 MB / 0.5262 GB Notification: Performance of NFVerifyModel.verify: time 0.001972/0.03339, allocations: 1.298 MB / 0.676 GB, free: 21.8 MB / 0.5262 GB Notification: Performance of NFConvertDAE.convert: time 0.003278/0.03667, allocations: 2.586 MB / 0.6785 GB, free: 20.55 MB / 0.5262 GB Notification: Performance of FrontEnd - DAE generated: time 7.434e-06/0.03668, allocations: 0.6094 kB / 0.6785 GB, free: 20.55 MB / 0.5262 GB Notification: Performance of FrontEnd: time 1.983e-06/0.03668, allocations: 0 / 0.6785 GB, free: 20.55 MB / 0.5262 GB Notification: Performance of Transformations before backend: time 0.0001109/0.03679, allocations: 1.188 kB / 0.6785 GB, free: 20.55 MB / 0.5262 GB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 449 * Number of variables: 449 Notification: Performance of Generate backend data structure: time 0.006089/0.04288, allocations: 2.892 MB / 0.6813 GB, free: 18.45 MB / 0.5262 GB Notification: Performance of prepare preOptimizeDAE: time 4.794e-05/0.04293, allocations: 13.84 kB / 0.6813 GB, free: 18.45 MB / 0.5262 GB Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0008052/0.04373, allocations: 372.7 kB / 0.6817 GB, free: 18.27 MB / 0.5262 GB Notification: Performance of preOpt evaluateParameters (simulation): time 0.001516/0.04525, allocations: 1.096 MB / 0.6828 GB, free: 17.38 MB / 0.5262 GB Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.0001075/0.04536, allocations: 133.6 kB / 0.6829 GB, free: 17.32 MB / 0.5262 GB Notification: Performance of preOpt expandDerOperator (simulation): time 0.0003542/0.04571, allocations: 209.1 kB / 0.6831 GB, free: 17.25 MB / 0.5262 GB Notification: Performance of preOpt clockPartitioning (simulation): time 0.003911/0.04962, allocations: 3.047 MB / 0.6861 GB, free: 15.32 MB / 0.5262 GB Notification: Performance of preOpt findStateOrder (simulation): time 7.93e-05/0.0497, allocations: 13.06 kB / 0.6861 GB, free: 15.31 MB / 0.5262 GB Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.0002318/0.04993, allocations: 73 kB / 0.6861 GB, free: 15.26 MB / 0.5262 GB Notification: Performance of preOpt inlineArrayEqn (simulation): time 4.587e-05/0.04998, allocations: 46.39 kB / 0.6862 GB, free: 15.26 MB / 0.5262 GB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.002999/0.05298, allocations: 2.003 MB / 0.6881 GB, free: 14.54 MB / 0.5262 GB Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.01198/0.06496, allocations: 7.11 MB / 0.6951 GB, free: 7.844 MB / 0.5262 GB Notification: Performance of preOpt comSubExp (simulation): time 0.001581/0.06654, allocations: 1.082 MB / 0.6961 GB, free: 6.734 MB / 0.5262 GB Notification: Performance of preOpt resolveLoops (simulation): time 0.0009889/0.06753, allocations: 0.7343 MB / 0.6969 GB, free: 5.973 MB / 0.5262 GB Notification: Performance of preOpt evalFunc (simulation): time 8.07e-05/0.06761, allocations: 42 kB / 0.6969 GB, free: 5.934 MB / 0.5262 GB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.001566/0.06917, allocations: 1.589 MB / 0.6985 GB, free: 4.25 MB / 0.5262 GB Notification: Performance of preOpt simplifyInStream (simulation): time 0.003917/0.07309, allocations: 1.857 MB / 0.7003 GB, free: 2.434 MB / 0.5262 GB Notification: Performance of pre-optimization done (n=198): time 1.211e-05/0.0731, allocations: 0 / 0.7003 GB, free: 2.434 MB / 0.5262 GB Notification: Performance of matching and sorting (n=202): time 0.009069/0.08217, allocations: 5.495 MB / 0.7056 GB, free: 12.8 MB / 0.5418 GB Notification: Performance of inlineWhenForInitialization (initialization): time 0.0001579/0.08233, allocations: 413.8 kB / 0.706 GB, free: 12.31 MB / 0.5418 GB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0009052/0.08323, allocations: 0.8736 MB / 0.7069 GB, free: 11.41 MB / 0.5418 GB Notification: Performance of collectPreVariables (initialization): time 0.0002042/0.08344, allocations: 73.69 kB / 0.707 GB, free: 11.33 MB / 0.5418 GB Notification: Performance of collectInitialEqns (initialization): time 0.0004764/0.08391, allocations: 0.743 MB / 0.7077 GB, free: 10.58 MB / 0.5418 GB Notification: Performance of collectInitialBindings (initialization): time 0.0005806/0.08449, allocations: 0.7243 MB / 0.7084 GB, free: 9.848 MB / 0.5418 GB Notification: Performance of simplifyInitialFunctions (initialization): time 0.000865/0.08536, allocations: 0.5799 MB / 0.709 GB, free: 9.258 MB / 0.5418 GB Notification: Performance of setup shared object (initialization): time 0.0001259/0.08549, allocations: 484.7 kB / 0.7094 GB, free: 8.781 MB / 0.5418 GB Notification: Performance of preBalanceInitialSystem (initialization): time 0.00135/0.08684, allocations: 0.9801 MB / 0.7104 GB, free: 7.742 MB / 0.5418 GB Notification: Performance of partitionIndependentBlocks (initialization): time 0.00163/0.08847, allocations: 1.651 MB / 0.712 GB, free: 5.742 MB / 0.5418 GB Notification: Performance of analyzeInitialSystem (initialization): time 0.004051/0.09252, allocations: 3.382 MB / 0.7153 GB, free: 1.996 MB / 0.5418 GB Notification: Performance of solveInitialSystemEqSystem (initialization): time 1.173e-05/0.09253, allocations: 4 kB / 0.7153 GB, free: 1.992 MB / 0.5418 GB Notification: Performance of matching and sorting (n=298) (initialization): time 0.004102/0.09663, allocations: 3.052 MB / 0.7183 GB, free: 14.82 MB / 0.5574 GB Notification: Performance of prepare postOptimizeDAE: time 0.0001196/0.09675, allocations: 267.3 kB / 0.7185 GB, free: 14.51 MB / 0.5574 GB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 1.694e-05/0.09677, allocations: 12 kB / 0.7185 GB, free: 14.5 MB / 0.5574 GB Notification: Performance of postOpt tearingSystem (initialization): time 3.852e-05/0.09681, allocations: 24 kB / 0.7186 GB, free: 14.47 MB / 0.5574 GB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.001897/0.0987, allocations: 0.8349 MB / 0.7194 GB, free: 13.64 MB / 0.5574 GB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 3.298e-05/0.09874, allocations: 31.86 kB / 0.7194 GB, free: 13.61 MB / 0.5574 GB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.001392/0.1001, allocations: 95.95 kB / 0.7195 GB, free: 13.51 MB / 0.5574 GB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.0002419/0.1004, allocations: 215.7 kB / 0.7197 GB, free: 13.3 MB / 0.5574 GB Warning: Assuming fixed start value for the following 42 variables: venous.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real lungs.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real arterial.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real adipose.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real bone.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real brain.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real heart.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real muscle.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real skin.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real gut.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real spleen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real liver.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real kidney.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real gonads.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real rest.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real lumenCompartment.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real periodicOralDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicOralDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real periodicOralDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicIMDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicIMDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real periodicIMDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicIVDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicIVDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicIADose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicIADose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real nasal_mucosa.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real periodicNasalDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicNasalDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real periodicNasalDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicNasalDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real periodicNasalDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real periodicIMDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real periodicIMDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real periodicOralDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real periodicOralDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real lumenCompartment.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real lumenCompartment.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real periodicNasalDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean periodicIMDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean periodicOralDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean lumenCompartment.rising:DISCRETE(fixed = true protected = true ) type: Boolean Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 55 * Number of states: 0 () * Number of discrete variables: 57 ($PRE.periodicNasalDose.absorptionLumen.Cmin,periodicNasalDose.absorptionLumen.Cmin,$PRE.periodicNasalDose.absorptionLumen.Cmax,periodicNasalDose.absorptionLumen.Cmax,$PRE.periodicIMDose.absorptionLumen.Cmin,periodicIMDose.absorptionLumen.Cmin,$PRE.periodicIMDose.absorptionLumen.Cmax,periodicIMDose.absorptionLumen.Cmax,$PRE.periodicOralDose.absorptionLumen.Cmin,periodicOralDose.absorptionLumen.Cmin,$PRE.periodicOralDose.absorptionLumen.Cmax,periodicOralDose.absorptionLumen.Cmax,$PRE.lumenCompartment.Cmin,lumenCompartment.Cmin,$PRE.lumenCompartment.Cmax,lumenCompartment.Cmax,$PRE.periodicNasalDose.pulse.count,$PRE.periodicNasalDose.pulse.T_start,$PRE.periodicNasalDose.absorptionLumen.rising,$PRE.periodicIADose.pulse.count,$PRE.periodicIADose.pulse.T_start,$PRE.periodicIVDose.pulse.count,$PRE.periodicIVDose.pulse.T_start,$PRE.periodicIMDose.pulse.count,$PRE.periodicIMDose.pulse.T_start,$PRE.periodicIMDose.absorptionLumen.rising,$PRE.periodicOralDose.pulse.count,$PRE.periodicOralDose.pulse.T_start,$PRE.periodicOralDose.absorptionLumen.rising,$PRE.lumenCompartment.rising,periodicNasalDose.pulse.count,periodicNasalDose.pulse.T_start,periodicNasalDose.absorptionLumen.rising,periodicIADose.pulse.count,periodicIADose.pulse.T_start,periodicIVDose.pulse.count,periodicIVDose.pulse.T_start,periodicIMDose.pulse.count,periodicIMDose.pulse.T_start,periodicIMDose.absorptionLumen.rising,periodicOralDose.pulse.count,periodicOralDose.pulse.T_start,periodicOralDose.absorptionLumen.rising,lumenCompartment.rising,$whenCondition8,$whenCondition7,$whenCondition6,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1,$whenCondition9,$whenCondition10,$whenCondition11,$whenCondition12,$whenCondition13) * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (289): * Single equations (assignments): 280 * Array equations: 0 * Algorithm blocks: 9 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of prepare postOptimizeDAE: time 0.001108/0.1015, allocations: 0.5697 MB / 0.7203 GB, free: 12.72 MB / 0.5574 GB Notification: Performance of postOpt lateInlineFunction (simulation): time 0.000504/0.102, allocations: 227 kB / 0.7205 GB, free: 12.5 MB / 0.5574 GB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.004292/0.1063, allocations: 2.723 MB / 0.7231 GB, free: 9.789 MB / 0.5574 GB Notification: Performance of postOpt inlineArrayEqn (simulation): time 1.374e-05/0.1063, allocations: 23.98 kB / 0.7232 GB, free: 9.766 MB / 0.5574 GB Notification: Performance of postOpt constantLinearSystem (simulation): time 6.182e-06/0.1063, allocations: 0 / 0.7232 GB, free: 9.766 MB / 0.5574 GB Notification: Performance of postOpt simplifysemiLinear (simulation): time 1.368e-05/0.1063, allocations: 11.97 kB / 0.7232 GB, free: 9.754 MB / 0.5574 GB Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.005003/0.1113, allocations: 3.641 MB / 0.7267 GB, free: 6.016 MB / 0.5574 GB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 5.04e-06/0.1113, allocations: 4 kB / 0.7267 GB, free: 6.012 MB / 0.5574 GB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.001404/0.1127, allocations: 443 kB / 0.7272 GB, free: 5.582 MB / 0.5574 GB Notification: Performance of postOpt tearingSystem (simulation): time 1.215e-05/0.1127, allocations: 4 kB / 0.7272 GB, free: 5.578 MB / 0.5574 GB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 0.0001554/0.1129, allocations: 111.8 kB / 0.7273 GB, free: 5.469 MB / 0.5574 GB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 6.773e-06/0.1129, allocations: 4 kB / 0.7273 GB, free: 5.465 MB / 0.5574 GB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 2.966e-06/0.1129, allocations: 4 kB / 0.7273 GB, free: 5.461 MB / 0.5574 GB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.003896/0.1168, allocations: 3.102 MB / 0.7303 GB, free: 2.258 MB / 0.5574 GB Notification: Performance of postOpt removeConstants (simulation): time 0.0006742/0.1175, allocations: 390.6 kB / 0.7307 GB, free: 1.875 MB / 0.5574 GB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0002417/0.1177, allocations: 67.88 kB / 0.7307 GB, free: 1.809 MB / 0.5574 GB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0007722/0.1185, allocations: 71.95 kB / 0.7308 GB, free: 1.738 MB / 0.5574 GB Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0002525/0.1187, allocations: 157.7 kB / 0.731 GB, free: 1.582 MB / 0.5574 GB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 0.0001347/0.1189, allocations: 119.8 kB / 0.7311 GB, free: 1.465 MB / 0.5574 GB Notification: Performance of sorting global known variables: time 0.0004874/0.1194, allocations: 0.5919 MB / 0.7316 GB, free: 0.8633 MB / 0.5574 GB Notification: Performance of sort global known variables: time 1.71e-07/0.1194, allocations: 0 / 0.7316 GB, free: 0.8633 MB / 0.5574 GB Notification: Performance of remove unused functions: time 0.001524/0.1209, allocations: 0.6328 MB / 0.7323 GB, free: 236 kB / 0.5574 GB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 2 * Number of states: 52 (venous.M,venous.AUC,lungs.M,lungs.AUC,arterial.M,arterial.AUC,adipose.M,adipose.AUC,bone.M,bone.AUC,brain.M,brain.AUC,heart.M,heart.AUC,muscle.M,muscle.AUC,skin.M,skin.AUC,gut.M,gut.AUC,spleen.M,spleen.AUC,liver.M,liver.AUC,kidney.M,kidney.AUC,kidneyElim.MExc,liverElim.MExc,gonads.M,gonads.AUC,rest.M,rest.AUC,lumenCompartment.C,lumenCompartment.AUC,periodicOralDose.TotalCumulativeMass,periodicOralDose.absorptionLumen.C,periodicOralDose.absorptionLumen.AUC,periodicOralDose.variableDose.TotalCumulativeMass,periodicIMDose.TotalCumulativeMass,periodicIMDose.absorptionLumen.C,periodicIMDose.absorptionLumen.AUC,periodicIMDose.variableDose.TotalCumulativeMass,periodicIVDose.TotalCumulativeMass,periodicIVDose.variableDose.TotalCumulativeMass,periodicIADose.TotalCumulativeMass,periodicIADose.variableDose.TotalCumulativeMass,nasal_mucosa.M,nasal_mucosa.AUC,periodicNasalDose.TotalCumulativeMass,periodicNasalDose.absorptionLumen.C,periodicNasalDose.absorptionLumen.AUC,periodicNasalDose.variableDose.TotalCumulativeMass) * Number of discrete variables: 35 ($whenCondition13,$whenCondition12,$whenCondition11,$whenCondition10,$whenCondition9,$whenCondition1,$whenCondition2,$whenCondition3,$whenCondition4,$whenCondition5,$whenCondition6,$whenCondition7,$whenCondition8,lumenCompartment.Cmax,lumenCompartment.Cmin,lumenCompartment.rising,periodicOralDose.absorptionLumen.Cmax,periodicOralDose.absorptionLumen.Cmin,periodicOralDose.absorptionLumen.rising,periodicOralDose.pulse.T_start,periodicOralDose.pulse.count,periodicIMDose.absorptionLumen.Cmax,periodicIMDose.absorptionLumen.Cmin,periodicIMDose.absorptionLumen.rising,periodicIMDose.pulse.T_start,periodicIMDose.pulse.count,periodicIVDose.pulse.T_start,periodicIVDose.pulse.count,periodicIADose.pulse.T_start,periodicIADose.pulse.count,periodicNasalDose.absorptionLumen.Cmax,periodicNasalDose.absorptionLumen.Cmin,periodicNasalDose.absorptionLumen.rising,periodicNasalDose.pulse.T_start,periodicNasalDose.pulse.count) * Number of discrete states: 25 (periodicOralDose.pulse.count,periodicIMDose.pulse.count,periodicIVDose.pulse.count,periodicIADose.pulse.count,periodicNasalDose.pulse.count,periodicNasalDose.absorptionLumen.Cmin,$whenCondition8,periodicNasalDose.absorptionLumen.Cmax,$whenCondition7,periodicNasalDose.absorptionLumen.rising,periodicIMDose.absorptionLumen.Cmin,$whenCondition6,periodicIMDose.absorptionLumen.Cmax,$whenCondition5,periodicIMDose.absorptionLumen.rising,periodicOralDose.absorptionLumen.Cmin,$whenCondition4,periodicOralDose.absorptionLumen.Cmax,$whenCondition3,periodicOralDose.absorptionLumen.rising,lumenCompartment.Cmin,$whenCondition2,lumenCompartment.Cmax,$whenCondition1,lumenCompartment.rising) * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (190): * Single equations (assignments): 176 * Array equations: 0 * Algorithm blocks: 4 * Record equations: 0 * When equations: 10 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of Backend phase and start with SimCode phase: time 0.0002613/0.1211, allocations: 215.1 kB / 0.7325 GB, free: 20 kB / 0.5574 GB Notification: Performance of simCode: created initialization part: time 0.003001/0.1241, allocations: 2.677 MB / 0.7351 GB, free: 13.15 MB / 0.573 GB Notification: Performance of simCode: created event and clocks part: time 2.905e-06/0.1241, allocations: 4.188 kB / 0.7351 GB, free: 13.14 MB / 0.573 GB Notification: Performance of simCode: created simulation system equations: time 0.001238/0.1254, allocations: 1.194 MB / 0.7363 GB, free: 11.88 MB / 0.573 GB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.001379/0.1268, allocations: 0.568 MB / 0.7368 GB, free: 11.34 MB / 0.573 GB Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.006404/0.1332, allocations: 5.156 MB / 0.7418 GB, free: 6.281 MB / 0.573 GB Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0002118/0.1334, allocations: 325.7 kB / 0.7422 GB, free: 5.938 MB / 0.573 GB Notification: Performance of simCode: alias equations: time 0.001241/0.1346, allocations: 495.2 kB / 0.7426 GB, free: 5.578 MB / 0.573 GB Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0009584/0.1356, allocations: 332 kB / 0.7429 GB, free: 5.254 MB / 0.573 GB Notification: Performance of SimCode: time 1.092e-06/0.1356, allocations: 4 kB / 0.743 GB, free: 5.25 MB / 0.573 GB Notification: Performance of Templates: time 0.04171/0.1773, allocations: 42.96 MB / 0.7849 GB, free: 11.23 MB / 0.6199 GB " [Timeout remaining time 660] make -j1 -f Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.makefile [Timeout 660] (rm -f Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.sim & ./Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body -abortSlowSimulation -alarm=240 -lv LOG_STATS > Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.pipe 2>&1) [Timeout 240] [Calling sys.exit(0), Time elapsed: 5.5454970467835665]