Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001102/0.001102, allocations: 92.22 kB / 19.65 MB, free: 276 kB / 13.93 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001335/0.001335, allocations: 173 kB / 23.02 MB, free: 1.543 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9501/0.9501, allocations: 177.1 MB / 203.4 MB, free: 5.641 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180]
"[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory.
Missing names are:
	Paracetamol_Experiment
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.624/1.624, allocations: 273.5 MB / 0.5209 GB, free: 14.84 MB / 458.7 MB
"
[Timeout remaining time 178]
Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment,tolerance=1e-06,outputFormat="empty",numberOfIntervals=86400,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment")
translateModel(Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment,tolerance=1e-06,outputFormat="empty",numberOfIntervals=86400,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.433e-06/1.433e-06, allocations: 0 / 0.647 GB, free: 38.71 MB / 0.5262 GB
Notification: Performance of FrontEnd - Absyn->SCode: time 2.178e-05/2.321e-05, allocations: 5.422 kB / 0.647 GB, free: 38.7 MB / 0.5262 GB
Notification: Performance of NFInst.instantiate(Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment): time 0.004847/0.00487, allocations: 6.725 MB / 0.6535 GB, free: 34.42 MB / 0.5262 GB
Notification: Performance of NFInst.instExpressions: time 0.003141/0.008011, allocations: 2.015 MB / 0.6555 GB, free: 33.05 MB / 0.5262 GB
Notification: Performance of NFInst.updateImplicitVariability: time 0.00041/0.008421, allocations: 14.38 kB / 0.6555 GB, free: 33.05 MB / 0.5262 GB
Notification: Performance of NFTyping.typeComponents: time 0.0006491/0.009071, allocations: 286.6 kB / 0.6558 GB, free: 32.9 MB / 0.5262 GB
Notification: Performance of NFTyping.typeBindings: time 0.0006359/0.009706, allocations: 468.7 kB / 0.6562 GB, free: 32.58 MB / 0.5262 GB
Notification: Performance of NFTyping.typeClassSections: time 0.0008978/0.0106, allocations: 0.5347 MB / 0.6568 GB, free: 32.24 MB / 0.5262 GB
Notification: Performance of NFFlatten.flatten: time 0.001313/0.01192, allocations: 1.802 MB / 0.6585 GB, free: 31.23 MB / 0.5262 GB
Notification: Performance of NFFlatten.resolveConnections: time 0.0003369/0.01225, allocations: 264.8 kB / 0.6588 GB, free: 31.08 MB / 0.5262 GB
Notification: Performance of NFEvalConstants.evaluate: time 0.0007005/0.01295, allocations: 0.9088 MB / 0.6597 GB, free: 30.64 MB / 0.5262 GB
Notification: Performance of NFSimplifyModel.simplify: time 0.000486/0.01344, allocations: 0.5258 MB / 0.6602 GB, free: 30.45 MB / 0.5262 GB
Notification: Performance of NFPackage.collectConstants: time 0.000157/0.0136, allocations: 167.2 kB / 0.6603 GB, free: 30.45 MB / 0.5262 GB
Notification: Performance of NFFlatten.collectFunctions: time 0.00045/0.01405, allocations: 317.2 kB / 0.6606 GB, free: 30.39 MB / 0.5262 GB
Notification: Performance of NFScalarize.scalarize: time 0.0002381/0.01429, allocations: 371.3 kB / 0.661 GB, free: 30.15 MB / 0.5262 GB
Notification: Performance of NFVerifyModel.verify: time 0.0004371/0.01472, allocations: 0.5206 MB / 0.6615 GB, free: 29.89 MB / 0.5262 GB
Notification: Performance of NFConvertDAE.convert: time 0.001154/0.01588, allocations: 1.378 MB / 0.6628 GB, free: 29.16 MB / 0.5262 GB
Notification: Performance of FrontEnd - DAE generated: time 5.19e-06/0.01588, allocations: 0 / 0.6628 GB, free: 29.16 MB / 0.5262 GB
Notification: Performance of FrontEnd: time 1.533e-06/0.01588, allocations: 1.438 kB / 0.6628 GB, free: 29.16 MB / 0.5262 GB
Notification: Performance of Transformations before backend: time 1.616e-05/0.0159, allocations: 0 / 0.6628 GB, free: 29.16 MB / 0.5262 GB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 233
 * Number of variables: 233
Notification: Performance of Generate backend data structure: time 0.001985/0.01788, allocations: 2.337 MB / 0.6651 GB, free: 27.3 MB / 0.5262 GB
Notification: Performance of prepare preOptimizeDAE: time 4.989e-05/0.01793, allocations: 11.47 kB / 0.6651 GB, free: 27.3 MB / 0.5262 GB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0008432/0.01878, allocations: 0.5149 MB / 0.6656 GB, free: 27.1 MB / 0.5262 GB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.000709/0.01949, allocations: 0.6901 MB / 0.6663 GB, free: 26.59 MB / 0.5262 GB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 5.235e-05/0.01954, allocations: 68.69 kB / 0.6664 GB, free: 26.56 MB / 0.5262 GB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.0001315/0.01967, allocations: 115.1 kB / 0.6665 GB, free: 26.52 MB / 0.5262 GB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.001214/0.02088, allocations: 1.304 MB / 0.6678 GB, free: 25.69 MB / 0.5262 GB
Notification: Performance of preOpt findStateOrder (simulation): time 3.9e-05/0.02092, allocations: 15.33 kB / 0.6678 GB, free: 25.68 MB / 0.5262 GB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 5.965e-05/0.02098, allocations: 40.69 kB / 0.6678 GB, free: 25.65 MB / 0.5262 GB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 2.256e-05/0.02101, allocations: 21.28 kB / 0.6678 GB, free: 25.65 MB / 0.5262 GB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0008252/0.02183, allocations: 0.9755 MB / 0.6688 GB, free: 25.04 MB / 0.5262 GB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.00252/0.02435, allocations: 2.639 MB / 0.6714 GB, free: 23.34 MB / 0.5262 GB
Notification: Performance of preOpt comSubExp (simulation): time 0.001113/0.02546, allocations: 1.169 MB / 0.6725 GB, free: 22.5 MB / 0.5262 GB
Notification: Performance of preOpt resolveLoops (simulation): time 0.0005139/0.02598, allocations: 0.7977 MB / 0.6733 GB, free: 21.84 MB / 0.5262 GB
Notification: Performance of preOpt evalFunc (simulation): time 5.618e-05/0.02603, allocations: 21.28 kB / 0.6733 GB, free: 21.84 MB / 0.5262 GB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.00111/0.02714, allocations: 1.652 MB / 0.6749 GB, free: 20.53 MB / 0.5262 GB
Notification: Performance of pre-optimization done (n=157): time 2.726e-06/0.02715, allocations: 0 / 0.6749 GB, free: 20.53 MB / 0.5262 GB
Notification: Performance of matching and sorting (n=165): time 0.005374/0.03252, allocations: 6.48 MB / 0.6812 GB, free: 15.79 MB / 0.5262 GB
Notification: Performance of inlineWhenForInitialization (initialization): time 0.0001734/0.03269, allocations: 1.035 MB / 0.6823 GB, free: 14.57 MB / 0.5262 GB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0008523/0.03355, allocations: 0.9277 MB / 0.6832 GB, free: 14.15 MB / 0.5262 GB
Notification: Performance of collectPreVariables (initialization): time 7.591e-05/0.03362, allocations: 75.89 kB / 0.6832 GB, free: 14.09 MB / 0.5262 GB
Notification: Performance of collectInitialEqns (initialization): time 0.0002981/0.03392, allocations: 0.5718 MB / 0.6838 GB, free: 13.63 MB / 0.5262 GB
Notification: Performance of collectInitialBindings (initialization): time 0.0002602/0.03418, allocations: 0.5242 MB / 0.6843 GB, free: 13.21 MB / 0.5262 GB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.0003024/0.03448, allocations: 287.8 kB / 0.6846 GB, free: 13.08 MB / 0.5262 GB
Notification: Performance of setup shared object (initialization): time 4.359e-05/0.03453, allocations: 479 kB / 0.685 GB, free: 12.61 MB / 0.5262 GB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.0006555/0.03518, allocations: 0.9286 MB / 0.6859 GB, free: 11.86 MB / 0.5262 GB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.0008225/0.036, allocations: 1.435 MB / 0.6873 GB, free: 10.43 MB / 0.5262 GB
Notification: Performance of analyzeInitialSystem (initialization): time 0.001889/0.03789, allocations: 2.997 MB / 0.6903 GB, free: 7.727 MB / 0.5262 GB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 1.416e-05/0.03791, allocations: 2.094 kB / 0.6903 GB, free: 7.727 MB / 0.5262 GB
Notification: Performance of matching and sorting (n=229) (initialization): time 0.002408/0.04032, allocations: 2.767 MB / 0.693 GB, free: 5.871 MB / 0.5262 GB
Notification: Performance of prepare postOptimizeDAE: time 0.0001396/0.04046, allocations: 0.5652 MB / 0.6935 GB, free: 5.227 MB / 0.5262 GB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 1.7e-05/0.04047, allocations: 8.906 kB / 0.6935 GB, free: 5.227 MB / 0.5262 GB
Notification: Performance of postOpt tearingSystem (initialization): time 4.073e-05/0.04051, allocations: 17.66 kB / 0.6936 GB, free: 5.227 MB / 0.5262 GB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0007519/0.04126, allocations: 343.4 kB / 0.6939 GB, free: 5.188 MB / 0.5262 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 2.496e-05/0.04129, allocations: 27.11 kB / 0.6939 GB, free: 5.18 MB / 0.5262 GB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.00058/0.04187, allocations: 78.39 kB / 0.694 GB, free: 5.156 MB / 0.5262 GB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.0002747/0.04214, allocations: 249.5 kB / 0.6942 GB, free: 5.137 MB / 0.5262 GB
Warning: Assuming fixed start value for the following 40 variables:
         patient4.dose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         patient4.dose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         patient4.dose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         patient4.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         patient_citalopram_CYP2C19_2.dose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         patient_citalopram_CYP2C19_2.dose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         patient_citalopram_CYP2C19_2.dose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         patient_citalopram_CYP2C19_2.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         patient2.dose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         patient2.dose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         patient2.dose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         patient2.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         patient_citalopram_normal.dose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         patient_citalopram_normal.dose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         patient_citalopram_normal.dose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         patient_citalopram_normal.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         patient_citalopram_normal.dose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         patient_citalopram_normal.dose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         patient_citalopram_normal.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         patient_citalopram_normal.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         patient2.dose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         patient2.dose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         patient2.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         patient2.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         patient_citalopram_CYP2C19_2.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         patient_citalopram_CYP2C19_2.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         patient4.dose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         patient4.dose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         patient4.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         patient4.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         patient_citalopram_normal.central.rising:DISCRETE(fixed = true protected = true )  type: Boolean
         patient_citalopram_normal.dose.absorptionLumen.rising:DISCRETE(fixed = true protected = true )  type: Boolean
         patient2.central.rising:DISCRETE(fixed = true protected = true )  type: Boolean
         patient2.dose.absorptionLumen.rising:DISCRETE(fixed = true protected = true )  type: Boolean
         patient_citalopram_CYP2C19_2.central.rising:DISCRETE(fixed = true protected = true )  type: Boolean
         patient_citalopram_CYP2C19_2.dose.absorptionLumen.rising:DISCRETE(fixed = true protected = true )  type: Boolean
         patient4.central.rising:DISCRETE(fixed = true protected = true )  type: Boolean
         patient4.dose.absorptionLumen.rising:DISCRETE(fixed = true protected = true )  type: Boolean
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 41
 * Number of states: 0 ()
 * Number of discrete variables: 92 ($PRE.patient_citalopram_normal.dose.absorptionLumen.Cmin,patient_citalopram_normal.dose.absorptionLumen.Cmin,$PRE.patient_citalopram_normal.dose.absorptionLumen.Cmax,patient_citalopram_normal.dose.absorptionLumen.Cmax,$PRE.patient_citalopram_normal.central.Cmin,patient_citalopram_normal.central.Cmin,$PRE.patient_citalopram_normal.central.Cmax,patient_citalopram_normal.central.Cmax,$PRE.patient2.dose.absorptionLumen.Cmin,patient2.dose.absorptionLumen.Cmin,$PRE.patient2.dose.absorptionLumen.Cmax,patient2.dose.absorptionLumen.Cmax,$PRE.patient2.central.Cmin,patient2.central.Cmin,$PRE.patient2.central.Cmax,patient2.central.Cmax,$PRE.patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmin,patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmin,$PRE.patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmax,patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmax,$PRE.patient_citalopram_CYP2C19_2.central.Cmin,patient_citalopram_CYP2C19_2.central.Cmin,$PRE.patient_citalopram_CYP2C19_2.central.Cmax,patient_citalopram_CYP2C19_2.central.Cmax,$PRE.patient4.dose.absorptionLumen.Cmin,patient4.dose.absorptionLumen.Cmin,$PRE.patient4.dose.absorptionLumen.Cmax,patient4.dose.absorptionLumen.Cmax,$PRE.patient4.central.Cmin,patient4.central.Cmin,$PRE.patient4.central.Cmax,patient4.central.Cmax,$PRE.patient_citalopram_normal.central.rising,$PRE.patient_citalopram_normal.dose.pulse.count,$PRE.patient_citalopram_normal.dose.pulse.T_start,$PRE.patient_citalopram_normal.dose.absorptionLumen.rising,patient_citalopram_normal.CYP2C19.status,patient_citalopram_normal.SLC22A2.status,patient_citalopram_normal.central.rising,patient_citalopram_normal.dose.pulse.count,patient_citalopram_normal.dose.pulse.T_start,patient_citalopram_normal.dose.absorptionLumen.rising,$whenCondition20,$whenCondition19,$whenCondition18,$whenCondition17,$whenCondition16,$PRE.patient2.central.rising,$PRE.patient2.dose.pulse.count,$PRE.patient2.dose.pulse.T_start,$PRE.patient2.dose.absorptionLumen.rising,patient2.CYP2C19.status,patient2.SLC22A2.status,patient2.central.rising,patient2.dose.pulse.count,patient2.dose.pulse.T_start,patient2.dose.absorptionLumen.rising,$whenCondition15,$whenCondition14,$whenCondition13,$whenCondition12,$whenCondition11,$PRE.patient_citalopram_CYP2C19_2.central.rising,$PRE.patient_citalopram_CYP2C19_2.dose.pulse.count,$PRE.patient_citalopram_CYP2C19_2.dose.pulse.T_start,$PRE.patient_citalopram_CYP2C19_2.dose.absorptionLumen.rising,patient_citalopram_CYP2C19_2.CYP2C19.status,patient_citalopram_CYP2C19_2.SLC22A2.status,patient_citalopram_CYP2C19_2.central.rising,patient_citalopram_CYP2C19_2.dose.pulse.count,patient_citalopram_CYP2C19_2.dose.pulse.T_start,patient_citalopram_CYP2C19_2.dose.absorptionLumen.rising,$whenCondition10,$whenCondition9,$whenCondition8,$whenCondition7,$whenCondition6,$PRE.patient4.central.rising,$PRE.patient4.dose.pulse.count,$PRE.patient4.dose.pulse.T_start,$PRE.patient4.dose.absorptionLumen.rising,patient4.CYP2C19.status,patient4.SLC22A2.status,patient4.central.rising,patient4.dose.pulse.count,patient4.dose.pulse.T_start,patient4.dose.absorptionLumen.rising,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1)
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (209):
 * Single equations (assignments): 189
 * Array equations: 0
 * Algorithm blocks: 20
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of prepare postOptimizeDAE: time 0.0007694/0.04291, allocations: 0.9319 MB / 0.6951 GB, free: 4.293 MB / 0.5262 GB
Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0004981/0.04341, allocations: 447 kB / 0.6956 GB, free: 4.125 MB / 0.5262 GB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0001456/0.04356, allocations: 137.5 kB / 0.6957 GB, free: 4.035 MB / 0.5262 GB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 1.222e-05/0.04357, allocations: 14.03 kB / 0.6957 GB, free: 4.035 MB / 0.5262 GB
Notification: Performance of postOpt constantLinearSystem (simulation): time 2.361e-05/0.04359, allocations: 1.406 kB / 0.6957 GB, free: 4.035 MB / 0.5262 GB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 1.554e-05/0.04361, allocations: 11.84 kB / 0.6957 GB, free: 4.031 MB / 0.5262 GB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.003048/0.04666, allocations: 3.958 MB / 0.6996 GB, free: 256 kB / 0.5262 GB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 4.408e-06/0.04666, allocations: 0 / 0.6996 GB, free: 256 kB / 0.5262 GB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0005728/0.04723, allocations: 227.7 kB / 0.6998 GB, free: 28 kB / 0.5262 GB
Notification: Performance of postOpt tearingSystem (simulation): time 8.326e-06/0.04724, allocations: 8 kB / 0.6998 GB, free: 20 kB / 0.5262 GB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 0.0001056/0.04735, allocations: 75.27 kB / 0.6999 GB, free: 15.95 MB / 0.5418 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 7.174e-06/0.04735, allocations: 4 kB / 0.6999 GB, free: 15.95 MB / 0.5418 GB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 3.406e-06/0.04736, allocations: 7.875 kB / 0.6999 GB, free: 15.94 MB / 0.5418 GB
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.0034/0.05076, allocations: 4.02 MB / 0.7038 GB, free: 11.6 MB / 0.5418 GB
Notification: Performance of postOpt removeConstants (simulation): time 0.0006653/0.05142, allocations: 318.9 kB / 0.7041 GB, free: 11.29 MB / 0.5418 GB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0002034/0.05163, allocations: 68 kB / 0.7042 GB, free: 11.22 MB / 0.5418 GB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0004277/0.05205, allocations: 63.95 kB / 0.7042 GB, free: 11.16 MB / 0.5418 GB
Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0002767/0.05233, allocations: 155.6 kB / 0.7044 GB, free: 11.01 MB / 0.5418 GB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 0.0002403/0.05257, allocations: 227.7 kB / 0.7046 GB, free: 10.79 MB / 0.5418 GB
Notification: Performance of sorting global known variables: time 0.0006831/0.05325, allocations: 0.54 MB / 0.7051 GB, free: 10.23 MB / 0.5418 GB
Notification: Performance of sort global known variables: time 8e-08/0.05325, allocations: 0 / 0.7051 GB, free: 10.23 MB / 0.5418 GB
Notification: Performance of remove unused functions: time 0.00124/0.05449, allocations: 380 kB / 0.7055 GB, free: 9.863 MB / 0.5418 GB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 5
 * Number of states: 28 (patient4.dose.TotalCumulativeMass,patient4.dose.absorptionLumen.C,patient4.dose.absorptionLumen.AUC,patient4.dose.variableDose.TotalCumulativeMass,patient4.central.C,patient4.central.AUC,patient4.elim.MExc,patient_citalopram_CYP2C19_2.dose.TotalCumulativeMass,patient_citalopram_CYP2C19_2.dose.absorptionLumen.C,patient_citalopram_CYP2C19_2.dose.absorptionLumen.AUC,patient_citalopram_CYP2C19_2.dose.variableDose.TotalCumulativeMass,patient_citalopram_CYP2C19_2.central.C,patient_citalopram_CYP2C19_2.central.AUC,patient_citalopram_CYP2C19_2.elim.MExc,patient2.dose.TotalCumulativeMass,patient2.dose.absorptionLumen.C,patient2.dose.absorptionLumen.AUC,patient2.dose.variableDose.TotalCumulativeMass,patient2.central.C,patient2.central.AUC,patient2.elim.MExc,patient_citalopram_normal.dose.TotalCumulativeMass,patient_citalopram_normal.dose.absorptionLumen.C,patient_citalopram_normal.dose.absorptionLumen.AUC,patient_citalopram_normal.dose.variableDose.TotalCumulativeMass,patient_citalopram_normal.central.C,patient_citalopram_normal.central.AUC,patient_citalopram_normal.elim.MExc)
 * Number of discrete variables: 60 ($whenCondition1,$whenCondition2,$whenCondition3,$whenCondition4,$whenCondition5,patient4.dose.absorptionLumen.Cmax,patient4.dose.absorptionLumen.Cmin,patient4.dose.absorptionLumen.rising,patient4.dose.pulse.T_start,patient4.dose.pulse.count,patient4.central.Cmax,patient4.central.Cmin,patient4.central.rising,patient4.SLC22A2.status,patient4.CYP2C19.status,$whenCondition6,$whenCondition7,$whenCondition8,$whenCondition9,$whenCondition10,patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmax,patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmin,patient_citalopram_CYP2C19_2.dose.absorptionLumen.rising,patient_citalopram_CYP2C19_2.dose.pulse.T_start,patient_citalopram_CYP2C19_2.dose.pulse.count,patient_citalopram_CYP2C19_2.central.Cmax,patient_citalopram_CYP2C19_2.central.Cmin,patient_citalopram_CYP2C19_2.central.rising,patient_citalopram_CYP2C19_2.SLC22A2.status,patient_citalopram_CYP2C19_2.CYP2C19.status,$whenCondition11,$whenCondition12,$whenCondition13,$whenCondition14,$whenCondition15,patient2.dose.absorptionLumen.Cmax,patient2.dose.absorptionLumen.Cmin,patient2.dose.absorptionLumen.rising,patient2.dose.pulse.T_start,patient2.dose.pulse.count,patient2.central.Cmax,patient2.central.Cmin,patient2.central.rising,patient2.SLC22A2.status,patient2.CYP2C19.status,$whenCondition16,$whenCondition17,$whenCondition18,$whenCondition19,$whenCondition20,patient_citalopram_normal.dose.absorptionLumen.Cmax,patient_citalopram_normal.dose.absorptionLumen.Cmin,patient_citalopram_normal.dose.absorptionLumen.rising,patient_citalopram_normal.dose.pulse.T_start,patient_citalopram_normal.dose.pulse.count,patient_citalopram_normal.central.Cmax,patient_citalopram_normal.central.Cmin,patient_citalopram_normal.central.rising,patient_citalopram_normal.SLC22A2.status,patient_citalopram_normal.CYP2C19.status)
 * Number of discrete states: 52 (patient_citalopram_normal.dose.pulse.count,patient_citalopram_normal.SLC22A2.status,patient_citalopram_normal.CYP2C19.status,patient_citalopram_normal.dose.absorptionLumen.Cmin,$whenCondition20,patient_citalopram_normal.dose.absorptionLumen.Cmax,$whenCondition19,patient_citalopram_normal.dose.absorptionLumen.rising,patient_citalopram_normal.central.Cmin,$whenCondition18,patient_citalopram_normal.central.Cmax,$whenCondition17,patient_citalopram_normal.central.rising,patient2.dose.pulse.count,patient2.SLC22A2.status,patient2.CYP2C19.status,patient2.dose.absorptionLumen.Cmin,$whenCondition15,patient2.dose.absorptionLumen.Cmax,$whenCondition14,patient2.dose.absorptionLumen.rising,patient2.central.Cmin,$whenCondition13,patient2.central.Cmax,$whenCondition12,patient2.central.rising,patient_citalopram_CYP2C19_2.dose.pulse.count,patient_citalopram_CYP2C19_2.SLC22A2.status,patient_citalopram_CYP2C19_2.CYP2C19.status,patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmin,$whenCondition10,patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmax,$whenCondition9,patient_citalopram_CYP2C19_2.dose.absorptionLumen.rising,patient_citalopram_CYP2C19_2.central.Cmin,$whenCondition8,patient_citalopram_CYP2C19_2.central.Cmax,$whenCondition7,patient_citalopram_CYP2C19_2.central.rising,patient4.dose.pulse.count,patient4.SLC22A2.status,patient4.CYP2C19.status,patient4.dose.absorptionLumen.Cmin,$whenCondition5,patient4.dose.absorptionLumen.Cmax,$whenCondition4,patient4.dose.absorptionLumen.rising,patient4.central.Cmin,$whenCondition3,patient4.central.Cmax,$whenCondition2,patient4.central.rising)
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (133):
 * Single equations (assignments): 109
 * Array equations: 0
 * Algorithm blocks: 16
 * Record equations: 0
 * When equations: 8
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of Backend phase and start with SimCode phase: time 0.0004362/0.05493, allocations: 304.9 kB / 0.7058 GB, free: 9.566 MB / 0.5418 GB
Notification: Performance of simCode: created initialization part: time 0.002411/0.05734, allocations: 3.148 MB / 0.7089 GB, free: 5.957 MB / 0.5418 GB
Notification: Performance of simCode: created event and clocks part: time 3.877e-06/0.05735, allocations: 320 / 0.7089 GB, free: 5.957 MB / 0.5418 GB
Notification: Performance of simCode: created simulation system equations: time 0.001194/0.05854, allocations: 1.91 MB / 0.7107 GB, free: 3.75 MB / 0.5418 GB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.001454/0.05999, allocations: 393.8 kB / 0.7111 GB, free: 3.402 MB / 0.5418 GB
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.004963/0.06496, allocations: 3.903 MB / 0.7149 GB, free: 15.44 MB / 0.5574 GB
Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0002318/0.06519, allocations: 310.5 kB / 0.7152 GB, free: 15.11 MB / 0.5574 GB
Notification: Performance of simCode: alias equations: time 0.0004536/0.06564, allocations: 111.7 kB / 0.7153 GB, free: 15 MB / 0.5574 GB
Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0001695/0.06581, allocations: 84.48 kB / 0.7154 GB, free: 14.92 MB / 0.5574 GB
Notification: Performance of SimCode: time 1.663e-06/0.06581, allocations: 4 kB / 0.7154 GB, free: 14.91 MB / 0.5574 GB
Notification: Performance of Templates: time 0.02937/0.09518, allocations: 24.56 MB / 0.7394 GB, free: 7.598 MB / 0.573 GB
"
[Timeout remaining time 660]
make -j1 -f Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.makefile [Timeout 660]
(rm -f Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.sim & ./Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment -abortSlowSimulation -alarm=240  -lv LOG_STATS > Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 5.738221171777695]