Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.000961/0.000961, allocations: 93.06 kB / 19.65 MB, free: 280 kB / 13.93 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.00109/0.00109, allocations: 169 kB / 23.02 MB, free: 1.551 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9616/0.9616, allocations: 177.1 MB / 203.4 MB, free: 5.645 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180]
"[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory.
Missing names are:
	Paracetamol_Experiment
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.588/1.588, allocations: 273.5 MB / 0.5209 GB, free: 14.85 MB / 458.7 MB
"
[Timeout remaining time 178]
Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI,tolerance=1e-09,outputFormat="empty",numberOfIntervals=86400,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI")
translateModel(Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI,tolerance=1e-09,outputFormat="empty",numberOfIntervals=86400,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 4.058e-06/4.058e-06, allocations: 0 / 0.647 GB, free: 38.51 MB / 0.5262 GB
Notification: Performance of FrontEnd - Absyn->SCode: time 3.348e-05/3.754e-05, allocations: 3.719 kB / 0.647 GB, free: 38.5 MB / 0.5262 GB
Notification: Performance of NFInst.instantiate(Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI): time 0.004988/0.005026, allocations: 6.89 MB / 0.6537 GB, free: 33.99 MB / 0.5262 GB
Notification: Performance of NFInst.instExpressions: time 0.001902/0.006928, allocations: 1.294 MB / 0.6549 GB, free: 33.09 MB / 0.5262 GB
Notification: Performance of NFInst.updateImplicitVariability: time 0.0002228/0.007151, allocations: 7.156 kB / 0.655 GB, free: 33.09 MB / 0.5262 GB
Notification: Performance of NFTyping.typeComponents: time 0.0002112/0.007362, allocations: 120.6 kB / 0.6551 GB, free: 33.02 MB / 0.5262 GB
Notification: Performance of NFTyping.typeBindings: time 0.0004156/0.007777, allocations: 341.1 kB / 0.6554 GB, free: 32.77 MB / 0.5262 GB
Notification: Performance of NFTyping.typeClassSections: time 0.0004624/0.00824, allocations: 286.5 kB / 0.6557 GB, free: 32.58 MB / 0.5262 GB
Notification: Performance of NFFlatten.flatten: time 0.0007691/0.009009, allocations: 1.218 MB / 0.6569 GB, free: 31.89 MB / 0.5262 GB
Notification: Performance of NFFlatten.resolveConnections: time 0.0002731/0.009282, allocations: 176.9 kB / 0.657 GB, free: 31.78 MB / 0.5262 GB
Notification: Performance of NFEvalConstants.evaluate: time 0.0005524/0.009834, allocations: 0.6289 MB / 0.6576 GB, free: 31.49 MB / 0.5262 GB
Notification: Performance of NFSimplifyModel.simplify: time 0.0003815/0.01022, allocations: 362.8 kB / 0.658 GB, free: 31.36 MB / 0.5262 GB
Notification: Performance of NFPackage.collectConstants: time 9.601e-05/0.01031, allocations: 110.1 kB / 0.6581 GB, free: 31.36 MB / 0.5262 GB
Notification: Performance of NFFlatten.collectFunctions: time 0.0001111/0.01042, allocations: 110.1 kB / 0.6582 GB, free: 31.36 MB / 0.5262 GB
Notification: Performance of NFScalarize.scalarize: time 8.447e-05/0.01051, allocations: 192.1 kB / 0.6584 GB, free: 31.22 MB / 0.5262 GB
Notification: Performance of NFVerifyModel.verify: time 0.0002474/0.01075, allocations: 363.1 kB / 0.6587 GB, free: 31.05 MB / 0.5262 GB
Notification: Performance of NFConvertDAE.convert: time 0.0005379/0.01129, allocations: 0.7179 MB / 0.6594 GB, free: 30.66 MB / 0.5262 GB
Notification: Performance of FrontEnd - DAE generated: time 4.469e-06/0.0113, allocations: 0 / 0.6594 GB, free: 30.66 MB / 0.5262 GB
Notification: Performance of FrontEnd: time 1.132e-06/0.0113, allocations: 1.375 kB / 0.6594 GB, free: 30.66 MB / 0.5262 GB
Notification: Performance of Transformations before backend: time 9.187e-06/0.01131, allocations: 0 / 0.6594 GB, free: 30.66 MB / 0.5262 GB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 144
 * Number of variables: 144
Notification: Performance of Generate backend data structure: time 0.001246/0.01255, allocations: 1.414 MB / 0.6608 GB, free: 29.55 MB / 0.5262 GB
Notification: Performance of prepare preOptimizeDAE: time 4.166e-05/0.0126, allocations: 9.031 kB / 0.6608 GB, free: 29.55 MB / 0.5262 GB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0001635/0.01276, allocations: 141.1 kB / 0.661 GB, free: 29.48 MB / 0.5262 GB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.0004125/0.01317, allocations: 453.1 kB / 0.6614 GB, free: 29.14 MB / 0.5262 GB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 3.299e-05/0.0132, allocations: 42.47 kB / 0.6614 GB, free: 29.12 MB / 0.5262 GB
Notification: Performance of preOpt expandDerOperator (simulation): time 7.761e-05/0.01328, allocations: 75.78 kB / 0.6615 GB, free: 29.1 MB / 0.5262 GB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.0007003/0.01398, allocations: 0.6872 MB / 0.6622 GB, free: 28.67 MB / 0.5262 GB
Notification: Performance of preOpt findStateOrder (simulation): time 2.76e-05/0.01401, allocations: 13.39 kB / 0.6622 GB, free: 28.66 MB / 0.5262 GB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 3.832e-05/0.01405, allocations: 24.44 kB / 0.6622 GB, free: 28.65 MB / 0.5262 GB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 1.611e-05/0.01406, allocations: 16.5 kB / 0.6622 GB, free: 28.64 MB / 0.5262 GB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0004731/0.01454, allocations: 478.2 kB / 0.6627 GB, free: 28.4 MB / 0.5262 GB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.001564/0.0161, allocations: 1.934 MB / 0.6646 GB, free: 26.97 MB / 0.5262 GB
Notification: Performance of preOpt comSubExp (simulation): time 0.0007752/0.01688, allocations: 0.5667 MB / 0.6651 GB, free: 26.61 MB / 0.5262 GB
Notification: Performance of preOpt resolveLoops (simulation): time 0.0002576/0.01713, allocations: 340.2 kB / 0.6654 GB, free: 26.35 MB / 0.5262 GB
Notification: Performance of preOpt evalFunc (simulation): time 4.193e-05/0.01718, allocations: 17.7 kB / 0.6655 GB, free: 26.35 MB / 0.5262 GB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.0006156/0.01779, allocations: 0.9583 MB / 0.6664 GB, free: 25.6 MB / 0.5262 GB
Notification: Performance of pre-optimization done (n=99): time 3.036e-06/0.0178, allocations: 2.469 kB / 0.6664 GB, free: 25.6 MB / 0.5262 GB
Notification: Performance of matching and sorting (n=105): time 0.002725/0.02052, allocations: 2.966 MB / 0.6693 GB, free: 23.54 MB / 0.5262 GB
Notification: Performance of inlineWhenForInitialization (initialization): time 0.0001178/0.02064, allocations: 0.5922 MB / 0.6699 GB, free: 22.84 MB / 0.5262 GB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0004243/0.02106, allocations: 0.5222 MB / 0.6704 GB, free: 22.56 MB / 0.5262 GB
Notification: Performance of collectPreVariables (initialization): time 5.165e-05/0.02111, allocations: 61.47 kB / 0.6704 GB, free: 22.51 MB / 0.5262 GB
Notification: Performance of collectInitialEqns (initialization): time 0.0001427/0.02126, allocations: 350.1 kB / 0.6708 GB, free: 22.22 MB / 0.5262 GB
Notification: Performance of collectInitialBindings (initialization): time 0.0001604/0.02142, allocations: 354.6 kB / 0.6711 GB, free: 21.94 MB / 0.5262 GB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.000188/0.02161, allocations: 192.6 kB / 0.6713 GB, free: 21.85 MB / 0.5262 GB
Notification: Performance of setup shared object (initialization): time 0.0001091/0.02171, allocations: 0.5614 MB / 0.6718 GB, free: 21.32 MB / 0.5262 GB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.0003277/0.02204, allocations: 459.5 kB / 0.6723 GB, free: 20.97 MB / 0.5262 GB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.0004244/0.02247, allocations: 0.8659 MB / 0.6731 GB, free: 20.07 MB / 0.5262 GB
Notification: Performance of analyzeInitialSystem (initialization): time 0.0009494/0.02342, allocations: 1.549 MB / 0.6746 GB, free: 18.64 MB / 0.5262 GB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 6.171e-06/0.02342, allocations: 3.969 kB / 0.6746 GB, free: 18.64 MB / 0.5262 GB
Notification: Performance of matching and sorting (n=159) (initialization): time 0.001166/0.02459, allocations: 1.377 MB / 0.676 GB, free: 17.77 MB / 0.5262 GB
Notification: Performance of prepare postOptimizeDAE: time 7.185e-05/0.02466, allocations: 265.9 kB / 0.6762 GB, free: 17.47 MB / 0.5262 GB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 1.319e-05/0.02467, allocations: 8.5 kB / 0.6763 GB, free: 17.47 MB / 0.5262 GB
Notification: Performance of postOpt tearingSystem (initialization): time 2.718e-05/0.0247, allocations: 14.16 kB / 0.6763 GB, free: 17.47 MB / 0.5262 GB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0005071/0.02521, allocations: 254.6 kB / 0.6765 GB, free: 17.45 MB / 0.5262 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 1.477e-05/0.02522, allocations: 17.09 kB / 0.6765 GB, free: 17.45 MB / 0.5262 GB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.000399/0.02562, allocations: 58.22 kB / 0.6766 GB, free: 17.43 MB / 0.5262 GB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 5.283e-05/0.02567, allocations: 45.94 kB / 0.6766 GB, free: 17.42 MB / 0.5262 GB
Warning: Assuming fixed start value for the following 30 variables:
         pK_lower.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         pK_lower.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         pK_lower.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         pK_lower.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         pK_1C_Lithium_upper.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         pK_1C_Lithium_upper.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         pK_1C_Lithium_upper.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         pK_1C_Lithium_upper.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         pK_1C_Lithium.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         pK_1C_Lithium.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         pK_1C_Lithium.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         pK_1C_Lithium.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         pK_1C_Lithium.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         pK_1C_Lithium.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         pK_1C_Lithium.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         pK_1C_Lithium.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         pK_1C_Lithium_upper.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         pK_1C_Lithium_upper.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         pK_lower.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         pK_lower.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         pK_lower.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         pK_lower.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         pK_1C_Lithium.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true )  type: Boolean
         pK_1C_Lithium.central.rising:DISCRETE(fixed = true protected = true )  type: Boolean
         pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true )  type: Boolean
         pK_1C_Lithium_upper.central.rising:DISCRETE(fixed = true protected = true )  type: Boolean
         pK_lower.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true )  type: Boolean
         pK_lower.central.rising:DISCRETE(fixed = true protected = true )  type: Boolean
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 36
 * Number of states: 0 ()
 * Number of discrete variables: 63 ($PRE.pK_1C_Lithium.central.Cmin,pK_1C_Lithium.central.Cmin,$PRE.pK_1C_Lithium.central.Cmax,pK_1C_Lithium.central.Cmax,$PRE.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,$PRE.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,$PRE.pK_1C_Lithium_upper.central.Cmin,pK_1C_Lithium_upper.central.Cmin,$PRE.pK_1C_Lithium_upper.central.Cmax,pK_1C_Lithium_upper.central.Cmax,$PRE.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,$PRE.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,$PRE.pK_lower.central.Cmin,pK_lower.central.Cmin,$PRE.pK_lower.central.Cmax,pK_lower.central.Cmax,$PRE.pK_lower.periodicDose.absorptionLumen.Cmin,pK_lower.periodicDose.absorptionLumen.Cmin,$PRE.pK_lower.periodicDose.absorptionLumen.Cmax,pK_lower.periodicDose.absorptionLumen.Cmax,$PRE.pK_1C_Lithium.periodicDose.pulse.count,$PRE.pK_1C_Lithium.periodicDose.pulse.T_start,$PRE.pK_1C_Lithium.periodicDose.absorptionLumen.rising,$PRE.pK_1C_Lithium.central.rising,pK_1C_Lithium.periodicDose.pulse.count,pK_1C_Lithium.periodicDose.pulse.T_start,pK_1C_Lithium.periodicDose.absorptionLumen.rising,pK_1C_Lithium.central.rising,$whenCondition15,$whenCondition14,$whenCondition13,$whenCondition12,$whenCondition11,$PRE.pK_1C_Lithium_upper.periodicDose.pulse.count,$PRE.pK_1C_Lithium_upper.periodicDose.pulse.T_start,$PRE.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,$PRE.pK_1C_Lithium_upper.central.rising,pK_1C_Lithium_upper.periodicDose.pulse.count,pK_1C_Lithium_upper.periodicDose.pulse.T_start,pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,pK_1C_Lithium_upper.central.rising,$whenCondition10,$whenCondition9,$whenCondition8,$whenCondition7,$whenCondition6,$PRE.pK_lower.periodicDose.pulse.count,$PRE.pK_lower.periodicDose.pulse.T_start,$PRE.pK_lower.periodicDose.absorptionLumen.rising,$PRE.pK_lower.central.rising,pK_lower.periodicDose.pulse.count,pK_lower.periodicDose.pulse.T_start,pK_lower.periodicDose.absorptionLumen.rising,pK_lower.central.rising,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1)
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (150):
 * Single equations (assignments): 141
 * Array equations: 0
 * Algorithm blocks: 9
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of prepare postOptimizeDAE: time 0.0004278/0.0261, allocations: 0.5604 MB / 0.6772 GB, free: 16.94 MB / 0.5262 GB
Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0001227/0.02623, allocations: 128.2 kB / 0.6773 GB, free: 16.89 MB / 0.5262 GB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 8.281e-05/0.02631, allocations: 82.03 kB / 0.6774 GB, free: 16.83 MB / 0.5262 GB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 7.534e-06/0.02632, allocations: 8.469 kB / 0.6774 GB, free: 16.83 MB / 0.5262 GB
Notification: Performance of postOpt constantLinearSystem (simulation): time 1.818e-05/0.02633, allocations: 2.484 kB / 0.6774 GB, free: 16.83 MB / 0.5262 GB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 9.979e-06/0.02634, allocations: 5.016 kB / 0.6774 GB, free: 16.83 MB / 0.5262 GB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.001898/0.02824, allocations: 2.142 MB / 0.6795 GB, free: 15.45 MB / 0.5262 GB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 3.697e-06/0.02825, allocations: 5.406 kB / 0.6795 GB, free: 15.44 MB / 0.5262 GB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0004657/0.02871, allocations: 163.6 kB / 0.6796 GB, free: 15.43 MB / 0.5262 GB
Notification: Performance of postOpt tearingSystem (simulation): time 6.212e-06/0.02872, allocations: 3.406 kB / 0.6796 GB, free: 15.43 MB / 0.5262 GB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 5.74e-05/0.02878, allocations: 37.52 kB / 0.6797 GB, free: 15.41 MB / 0.5262 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 5.48e-06/0.02878, allocations: 7.578 kB / 0.6797 GB, free: 15.41 MB / 0.5262 GB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 2.896e-06/0.02878, allocations: 5.188 kB / 0.6797 GB, free: 15.4 MB / 0.5262 GB
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.001403/0.03019, allocations: 1.936 MB / 0.6816 GB, free: 14.12 MB / 0.5262 GB
Notification: Performance of postOpt removeConstants (simulation): time 0.0002518/0.03044, allocations: 168.5 kB / 0.6817 GB, free: 14.02 MB / 0.5262 GB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0001013/0.03054, allocations: 46.33 kB / 0.6818 GB, free: 14 MB / 0.5262 GB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.000269/0.03081, allocations: 47.95 kB / 0.6818 GB, free: 13.98 MB / 0.5262 GB
Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0001631/0.03097, allocations: 93.05 kB / 0.6819 GB, free: 13.96 MB / 0.5262 GB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 4.222e-05/0.03101, allocations: 37.23 kB / 0.682 GB, free: 13.95 MB / 0.5262 GB
Notification: Performance of sorting global known variables: time 0.000264/0.03128, allocations: 349.2 kB / 0.6823 GB, free: 13.78 MB / 0.5262 GB
Notification: Performance of sort global known variables: time 5e-08/0.03128, allocations: 1.594 kB / 0.6823 GB, free: 13.78 MB / 0.5262 GB
Notification: Performance of remove unused functions: time 0.0006154/0.03189, allocations: 246.2 kB / 0.6825 GB, free: 13.75 MB / 0.5262 GB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 3
 * Number of states: 21 (pK_lower.central.C,pK_lower.central.AUC,pK_lower.elim.MExc,pK_lower.periodicDose.TotalCumulativeMass,pK_lower.periodicDose.absorptionLumen.C,pK_lower.periodicDose.absorptionLumen.AUC,pK_lower.periodicDose.variableDose.TotalCumulativeMass,pK_1C_Lithium_upper.central.C,pK_1C_Lithium_upper.central.AUC,pK_1C_Lithium_upper.elim.MExc,pK_1C_Lithium_upper.periodicDose.TotalCumulativeMass,pK_1C_Lithium_upper.periodicDose.absorptionLumen.C,pK_1C_Lithium_upper.periodicDose.absorptionLumen.AUC,pK_1C_Lithium_upper.periodicDose.variableDose.TotalCumulativeMass,pK_1C_Lithium.central.C,pK_1C_Lithium.central.AUC,pK_1C_Lithium.elim.MExc,pK_1C_Lithium.periodicDose.TotalCumulativeMass,pK_1C_Lithium.periodicDose.absorptionLumen.C,pK_1C_Lithium.periodicDose.absorptionLumen.AUC,pK_1C_Lithium.periodicDose.variableDose.TotalCumulativeMass)
 * Number of discrete variables: 39 ($whenCondition1,$whenCondition2,$whenCondition3,$whenCondition4,$whenCondition5,pK_lower.central.Cmax,pK_lower.central.Cmin,pK_lower.central.rising,pK_lower.periodicDose.absorptionLumen.Cmax,pK_lower.periodicDose.absorptionLumen.Cmin,pK_lower.periodicDose.absorptionLumen.rising,pK_lower.periodicDose.pulse.T_start,pK_lower.periodicDose.pulse.count,$whenCondition6,$whenCondition7,$whenCondition8,$whenCondition9,$whenCondition10,pK_1C_Lithium_upper.central.Cmax,pK_1C_Lithium_upper.central.Cmin,pK_1C_Lithium_upper.central.rising,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,pK_1C_Lithium_upper.periodicDose.pulse.T_start,pK_1C_Lithium_upper.periodicDose.pulse.count,$whenCondition11,$whenCondition12,$whenCondition13,$whenCondition14,$whenCondition15,pK_1C_Lithium.central.Cmax,pK_1C_Lithium.central.Cmin,pK_1C_Lithium.central.rising,pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,pK_1C_Lithium.periodicDose.absorptionLumen.rising,pK_1C_Lithium.periodicDose.pulse.T_start,pK_1C_Lithium.periodicDose.pulse.count)
 * Number of discrete states: 33 (pK_1C_Lithium.periodicDose.pulse.count,pK_1C_Lithium.central.Cmin,$whenCondition15,pK_1C_Lithium.central.Cmax,$whenCondition14,pK_1C_Lithium.central.rising,pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,$whenCondition13,pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,$whenCondition12,pK_1C_Lithium.periodicDose.absorptionLumen.rising,pK_1C_Lithium_upper.periodicDose.pulse.count,pK_1C_Lithium_upper.central.Cmin,$whenCondition10,pK_1C_Lithium_upper.central.Cmax,$whenCondition9,pK_1C_Lithium_upper.central.rising,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,$whenCondition8,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,$whenCondition7,pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,pK_lower.periodicDose.pulse.count,pK_lower.central.Cmin,$whenCondition5,pK_lower.central.Cmax,$whenCondition4,pK_lower.central.rising,pK_lower.periodicDose.absorptionLumen.Cmin,$whenCondition3,pK_lower.periodicDose.absorptionLumen.Cmax,$whenCondition2,pK_lower.periodicDose.absorptionLumen.rising)
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (87):
 * Single equations (assignments): 75
 * Array equations: 0
 * Algorithm blocks: 6
 * Record equations: 0
 * When equations: 6
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of Backend phase and start with SimCode phase: time 0.000156/0.03205, allocations: 186.2 kB / 0.6827 GB, free: 13.62 MB / 0.5262 GB
Notification: Performance of simCode: created initialization part: time 0.001042/0.03309, allocations: 1.499 MB / 0.6842 GB, free: 12.44 MB / 0.5262 GB
Notification: Performance of simCode: created event and clocks part: time 2.625e-06/0.03309, allocations: 1.781 kB / 0.6842 GB, free: 12.44 MB / 0.5262 GB
Notification: Performance of simCode: created simulation system equations: time 0.0004499/0.03354, allocations: 0.8228 MB / 0.685 GB, free: 11.78 MB / 0.5262 GB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0008243/0.03437, allocations: 292.8 kB / 0.6853 GB, free: 11.69 MB / 0.5262 GB
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.003033/0.0374, allocations: 2.294 MB / 0.6875 GB, free: 10.2 MB / 0.5262 GB
Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0001454/0.03755, allocations: 174.2 kB / 0.6877 GB, free: 10.12 MB / 0.5262 GB
Notification: Performance of simCode: alias equations: time 0.0003601/0.03791, allocations: 95.48 kB / 0.6877 GB, free: 10.1 MB / 0.5262 GB
Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0001451/0.03805, allocations: 70.06 kB / 0.6878 GB, free: 10.09 MB / 0.5262 GB
Notification: Performance of SimCode: time 1.433e-06/0.03805, allocations: 0 / 0.6878 GB, free: 10.09 MB / 0.5262 GB
Notification: Performance of Templates: time 0.01706/0.05511, allocations: 14.87 MB / 0.7023 GB, free: 15.5 MB / 0.5418 GB
"
[Timeout remaining time 660]
make -j1 -f Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.makefile [Timeout 660]
(rm -f Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.sim & ./Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI -abortSlowSimulation -alarm=240  -lv LOG_STATS > Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 5.022516889963299]