Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.0008538/0.0008538, allocations: 88.22 kB / 19.65 MB, free: 272 kB / 13.93 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.0009557/0.0009557, allocations: 177 kB / 23.03 MB, free: 1.535 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9615/0.9615, allocations: 177.1 MB / 203.4 MB, free: 5.629 MB / 186.7 MB " [Timeout remaining time 179] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180] "[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory. Missing names are: Paracetamol_Experiment Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.56/1.56, allocations: 273.5 MB / 0.5209 GB, free: 14.82 MB / 458.7 MB " [Timeout remaining time 178] Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: translateModel(Pharmacolibrary.Examples.PK_Lithium.PGx_experiment,tolerance=1e-06,outputFormat="empty",numberOfIntervals=500,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment") translateModel(Pharmacolibrary.Examples.PK_Lithium.PGx_experiment,tolerance=1e-06,outputFormat="empty",numberOfIntervals=500,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment") [Timeout 660] "Notification: Performance of FrontEnd - loaded program: time 3.457e-06/3.457e-06, allocations: 0 / 0.647 GB, free: 38.67 MB / 0.5262 GB Notification: Performance of FrontEnd - Absyn->SCode: time 2.898e-05/3.244e-05, allocations: 2.859 kB / 0.647 GB, free: 38.66 MB / 0.5262 GB Notification: Performance of NFInst.instantiate(Pharmacolibrary.Examples.PK_Lithium.PGx_experiment): time 0.01148/0.01151, allocations: 11.17 MB / 0.6579 GB, free: 31.37 MB / 0.5262 GB Notification: Performance of NFInst.instExpressions: time 0.002863/0.01437, allocations: 2.272 MB / 0.6601 GB, free: 29.75 MB / 0.5262 GB Notification: Performance of NFInst.updateImplicitVariability: time 0.0003546/0.01472, allocations: 17.94 kB / 0.6601 GB, free: 29.75 MB / 0.5262 GB Notification: Performance of NFTyping.typeComponents: time 0.0003011/0.01503, allocations: 229.6 kB / 0.6603 GB, free: 29.61 MB / 0.5262 GB Notification: Performance of NFTyping.typeBindings: time 0.0007217/0.01575, allocations: 0.6883 MB / 0.661 GB, free: 29.09 MB / 0.5262 GB Notification: Performance of NFTyping.typeClassSections: time 0.00064/0.01639, allocations: 0.623 MB / 0.6616 GB, free: 28.64 MB / 0.5262 GB Notification: Performance of NFFlatten.flatten: time 0.00144/0.01783, allocations: 2.673 MB / 0.6642 GB, free: 27.08 MB / 0.5262 GB Notification: Performance of NFFlatten.resolveConnections: time 0.0004282/0.01826, allocations: 368.1 kB / 0.6646 GB, free: 26.84 MB / 0.5262 GB Notification: Performance of NFEvalConstants.evaluate: time 0.0009624/0.01922, allocations: 1.362 MB / 0.6659 GB, free: 26.14 MB / 0.5262 GB Notification: Performance of NFSimplifyModel.simplify: time 0.0007081/0.01993, allocations: 0.7396 MB / 0.6666 GB, free: 25.86 MB / 0.5262 GB Notification: Performance of NFPackage.collectConstants: time 0.0002462/0.02017, allocations: 279.3 kB / 0.6669 GB, free: 25.86 MB / 0.5262 GB Notification: Performance of NFFlatten.collectFunctions: time 0.0002697/0.02044, allocations: 280.4 kB / 0.6671 GB, free: 25.86 MB / 0.5262 GB Notification: Performance of NFScalarize.scalarize: time 0.0001713/0.02061, allocations: 450.9 kB / 0.6676 GB, free: 25.51 MB / 0.5262 GB Notification: Performance of NFVerifyModel.verify: time 0.0005478/0.02116, allocations: 0.7595 MB / 0.6683 GB, free: 25.12 MB / 0.5262 GB Notification: Performance of NFConvertDAE.convert: time 0.001019/0.02218, allocations: 1.588 MB / 0.6699 GB, free: 24.19 MB / 0.5262 GB Notification: Performance of FrontEnd - DAE generated: time 4.067e-06/0.02218, allocations: 3.031 kB / 0.6699 GB, free: 24.19 MB / 0.5262 GB Notification: Performance of FrontEnd: time 1.323e-06/0.02219, allocations: 0 / 0.6699 GB, free: 24.19 MB / 0.5262 GB Notification: Performance of Transformations before backend: time 1.865e-05/0.0222, allocations: 0 / 0.6699 GB, free: 24.19 MB / 0.5262 GB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 288 * Number of variables: 288 Notification: Performance of Generate backend data structure: time 0.002118/0.02432, allocations: 2.553 MB / 0.6724 GB, free: 22.27 MB / 0.5262 GB Notification: Performance of prepare preOptimizeDAE: time 3.647e-05/0.02436, allocations: 11.09 kB / 0.6724 GB, free: 22.27 MB / 0.5262 GB Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0002843/0.02464, allocations: 283.4 kB / 0.6726 GB, free: 22.13 MB / 0.5262 GB Notification: Performance of preOpt evaluateParameters (simulation): time 0.0007488/0.02539, allocations: 0.8361 MB / 0.6735 GB, free: 21.52 MB / 0.5262 GB Notification: Performance of preOpt simplifyIfEquations (simulation): time 5.056e-05/0.02544, allocations: 88.7 kB / 0.6735 GB, free: 21.48 MB / 0.5262 GB Notification: Performance of preOpt expandDerOperator (simulation): time 0.0001499/0.02559, allocations: 142.7 kB / 0.6737 GB, free: 21.43 MB / 0.5262 GB Notification: Performance of preOpt clockPartitioning (simulation): time 0.001391/0.02698, allocations: 1.34 MB / 0.675 GB, free: 20.61 MB / 0.5262 GB Notification: Performance of preOpt findStateOrder (simulation): time 4.931e-05/0.02703, allocations: 21.06 kB / 0.675 GB, free: 20.59 MB / 0.5262 GB Notification: Performance of preOpt replaceEdgeChange (simulation): time 7.233e-05/0.0271, allocations: 52.41 kB / 0.6751 GB, free: 20.56 MB / 0.5262 GB Notification: Performance of preOpt inlineArrayEqn (simulation): time 2.221e-05/0.02713, allocations: 27.75 kB / 0.6751 GB, free: 20.56 MB / 0.5262 GB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0009913/0.02812, allocations: 0.9348 MB / 0.676 GB, free: 20.07 MB / 0.5262 GB Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.003155/0.03127, allocations: 4.179 MB / 0.6801 GB, free: 17.02 MB / 0.5262 GB Notification: Performance of preOpt comSubExp (simulation): time 0.001195/0.03247, allocations: 1.147 MB / 0.6812 GB, free: 16.28 MB / 0.5262 GB Notification: Performance of preOpt resolveLoops (simulation): time 0.0005076/0.03298, allocations: 0.6729 MB / 0.6819 GB, free: 15.75 MB / 0.5262 GB Notification: Performance of preOpt evalFunc (simulation): time 5.878e-05/0.03303, allocations: 33.14 kB / 0.6819 GB, free: 15.75 MB / 0.5262 GB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.001264/0.0343, allocations: 1.918 MB / 0.6838 GB, free: 14.29 MB / 0.5262 GB Notification: Performance of pre-optimization done (n=198): time 3.296e-06/0.0343, allocations: 0 / 0.6838 GB, free: 14.29 MB / 0.5262 GB Notification: Performance of matching and sorting (n=210): time 0.005344/0.03965, allocations: 6.455 MB / 0.6901 GB, free: 9.75 MB / 0.5262 GB Notification: Performance of inlineWhenForInitialization (initialization): time 0.0001906/0.03984, allocations: 1.178 MB / 0.6912 GB, free: 8.367 MB / 0.5262 GB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0008915/0.04073, allocations: 0.8928 MB / 0.6921 GB, free: 7.98 MB / 0.5262 GB Notification: Performance of collectPreVariables (initialization): time 0.0001053/0.04083, allocations: 102.4 kB / 0.6922 GB, free: 7.906 MB / 0.5262 GB Notification: Performance of collectInitialEqns (initialization): time 0.0002928/0.04113, allocations: 0.5758 MB / 0.6927 GB, free: 7.434 MB / 0.5262 GB Notification: Performance of collectInitialBindings (initialization): time 0.0003475/0.04147, allocations: 0.68 MB / 0.6934 GB, free: 6.887 MB / 0.5262 GB Notification: Performance of simplifyInitialFunctions (initialization): time 0.0004215/0.0419, allocations: 370.7 kB / 0.6938 GB, free: 6.719 MB / 0.5262 GB Notification: Performance of setup shared object (initialization): time 3.379e-05/0.04193, allocations: 481.7 kB / 0.6942 GB, free: 6.246 MB / 0.5262 GB Notification: Performance of preBalanceInitialSystem (initialization): time 0.0007702/0.0427, allocations: 0.8916 MB / 0.6951 GB, free: 5.551 MB / 0.5262 GB Notification: Performance of partitionIndependentBlocks (initialization): time 0.0009108/0.04361, allocations: 1.727 MB / 0.6968 GB, free: 3.641 MB / 0.5262 GB Notification: Performance of analyzeInitialSystem (initialization): time 0.001938/0.04555, allocations: 3.099 MB / 0.6998 GB, free: 452 kB / 0.5262 GB Notification: Performance of solveInitialSystemEqSystem (initialization): time 1.177e-05/0.04556, allocations: 4 kB / 0.6998 GB, free: 448 kB / 0.5262 GB Notification: Performance of matching and sorting (n=318) (initialization): time 0.002459/0.04802, allocations: 2.727 MB / 0.7025 GB, free: 13.48 MB / 0.5418 GB Notification: Performance of prepare postOptimizeDAE: time 0.0002469/0.04827, allocations: 0.5145 MB / 0.703 GB, free: 12.86 MB / 0.5418 GB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 1.901e-05/0.04829, allocations: 19.23 kB / 0.703 GB, free: 12.84 MB / 0.5418 GB Notification: Performance of postOpt tearingSystem (initialization): time 3.548e-05/0.04832, allocations: 28 kB / 0.703 GB, free: 12.81 MB / 0.5418 GB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0009466/0.04927, allocations: 0.4954 MB / 0.7035 GB, free: 12.32 MB / 0.5418 GB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 2.962e-05/0.0493, allocations: 39.86 kB / 0.7035 GB, free: 12.28 MB / 0.5418 GB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.000601/0.0499, allocations: 112 kB / 0.7036 GB, free: 12.17 MB / 0.5418 GB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.0001083/0.05001, allocations: 103.2 kB / 0.7037 GB, free: 12.07 MB / 0.5418 GB Warning: Assuming fixed start value for the following 60 variables: low_clearance.pK_lower.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real low_clearance.pK_lower.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real low_clearance.pK_lower.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real low_clearance.pK_lower.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real low_clearance.pK_1C_Lithium_upper.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real low_clearance.pK_1C_Lithium_upper.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real low_clearance.pK_1C_Lithium_upper.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real low_clearance.pK_1C_Lithium.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real low_clearance.pK_1C_Lithium.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real low_clearance.pK_1C_Lithium.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real normal.pK_lower.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real normal.pK_lower.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real normal.pK_lower.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real normal.pK_lower.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real normal.pK_1C_Lithium_upper.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real normal.pK_1C_Lithium_upper.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real normal.pK_1C_Lithium_upper.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real normal.pK_1C_Lithium.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real normal.pK_1C_Lithium.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real normal.pK_1C_Lithium.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real normal.pK_1C_Lithium.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real normal.pK_1C_Lithium.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium_upper.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium_upper.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_lower.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_lower.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_lower.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_lower.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium_upper.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium_upper.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_lower.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_lower.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_lower.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_lower.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean normal.pK_1C_Lithium.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean normal.pK_1C_Lithium_upper.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean normal.pK_lower.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean normal.pK_lower.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean low_clearance.pK_1C_Lithium.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean low_clearance.pK_1C_Lithium_upper.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean low_clearance.pK_lower.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean low_clearance.pK_lower.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 72 * Number of states: 0 () * Number of discrete variables: 126 ($PRE.normal.pK_1C_Lithium.central.Cmin,normal.pK_1C_Lithium.central.Cmin,$PRE.normal.pK_1C_Lithium.central.Cmax,normal.pK_1C_Lithium.central.Cmax,$PRE.normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,$PRE.normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,$PRE.normal.pK_1C_Lithium_upper.central.Cmin,normal.pK_1C_Lithium_upper.central.Cmin,$PRE.normal.pK_1C_Lithium_upper.central.Cmax,normal.pK_1C_Lithium_upper.central.Cmax,$PRE.normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,$PRE.normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,$PRE.normal.pK_lower.central.Cmin,normal.pK_lower.central.Cmin,$PRE.normal.pK_lower.central.Cmax,normal.pK_lower.central.Cmax,$PRE.normal.pK_lower.periodicDose.absorptionLumen.Cmin,normal.pK_lower.periodicDose.absorptionLumen.Cmin,$PRE.normal.pK_lower.periodicDose.absorptionLumen.Cmax,normal.pK_lower.periodicDose.absorptionLumen.Cmax,$PRE.low_clearance.pK_1C_Lithium.central.Cmin,low_clearance.pK_1C_Lithium.central.Cmin,$PRE.low_clearance.pK_1C_Lithium.central.Cmax,low_clearance.pK_1C_Lithium.central.Cmax,$PRE.low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,$PRE.low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,$PRE.low_clearance.pK_1C_Lithium_upper.central.Cmin,low_clearance.pK_1C_Lithium_upper.central.Cmin,$PRE.low_clearance.pK_1C_Lithium_upper.central.Cmax,low_clearance.pK_1C_Lithium_upper.central.Cmax,$PRE.low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,$PRE.low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,$PRE.low_clearance.pK_lower.central.Cmin,low_clearance.pK_lower.central.Cmin,$PRE.low_clearance.pK_lower.central.Cmax,low_clearance.pK_lower.central.Cmax,$PRE.low_clearance.pK_lower.periodicDose.absorptionLumen.Cmin,low_clearance.pK_lower.periodicDose.absorptionLumen.Cmin,$PRE.low_clearance.pK_lower.periodicDose.absorptionLumen.Cmax,low_clearance.pK_lower.periodicDose.absorptionLumen.Cmax,$PRE.normal.pK_1C_Lithium.periodicDose.pulse.count,$PRE.normal.pK_1C_Lithium.periodicDose.pulse.T_start,$PRE.normal.pK_1C_Lithium.periodicDose.absorptionLumen.rising,$PRE.normal.pK_1C_Lithium.central.rising,normal.pK_1C_Lithium.periodicDose.pulse.count,normal.pK_1C_Lithium.periodicDose.pulse.T_start,normal.pK_1C_Lithium.periodicDose.absorptionLumen.rising,normal.pK_1C_Lithium.central.rising,$whenCondition30,$whenCondition29,$whenCondition28,$whenCondition27,$whenCondition26,$PRE.normal.pK_1C_Lithium_upper.periodicDose.pulse.count,$PRE.normal.pK_1C_Lithium_upper.periodicDose.pulse.T_start,$PRE.normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,$PRE.normal.pK_1C_Lithium_upper.central.rising,normal.pK_1C_Lithium_upper.periodicDose.pulse.count,normal.pK_1C_Lithium_upper.periodicDose.pulse.T_start,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,normal.pK_1C_Lithium_upper.central.rising,$whenCondition25,$whenCondition24,$whenCondition23,$whenCondition22,$whenCondition21,$PRE.normal.pK_lower.periodicDose.pulse.count,$PRE.normal.pK_lower.periodicDose.pulse.T_start,$PRE.normal.pK_lower.periodicDose.absorptionLumen.rising,$PRE.normal.pK_lower.central.rising,normal.pK_lower.periodicDose.pulse.count,normal.pK_lower.periodicDose.pulse.T_start,normal.pK_lower.periodicDose.absorptionLumen.rising,normal.pK_lower.central.rising,$whenCondition20,$whenCondition19,$whenCondition18,$whenCondition17,$whenCondition16,$PRE.low_clearance.pK_1C_Lithium.periodicDose.pulse.count,$PRE.low_clearance.pK_1C_Lithium.periodicDose.pulse.T_start,$PRE.low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.rising,$PRE.low_clearance.pK_1C_Lithium.central.rising,low_clearance.pK_1C_Lithium.periodicDose.pulse.count,low_clearance.pK_1C_Lithium.periodicDose.pulse.T_start,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.rising,low_clearance.pK_1C_Lithium.central.rising,$whenCondition15,$whenCondition14,$whenCondition13,$whenCondition12,$whenCondition11,$PRE.low_clearance.pK_1C_Lithium_upper.periodicDose.pulse.count,$PRE.low_clearance.pK_1C_Lithium_upper.periodicDose.pulse.T_start,$PRE.low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,$PRE.low_clearance.pK_1C_Lithium_upper.central.rising,low_clearance.pK_1C_Lithium_upper.periodicDose.pulse.count,low_clearance.pK_1C_Lithium_upper.periodicDose.pulse.T_start,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,low_clearance.pK_1C_Lithium_upper.central.rising,$whenCondition10,$whenCondition9,$whenCondition8,$whenCondition7,$whenCondition6,$PRE.low_clearance.pK_lower.periodicDose.pulse.count,$PRE.low_clearance.pK_lower.periodicDose.pulse.T_start,$PRE.low_clearance.pK_lower.periodicDose.absorptionLumen.rising,$PRE.low_clearance.pK_lower.central.rising,low_clearance.pK_lower.periodicDose.pulse.count,low_clearance.pK_lower.periodicDose.pulse.T_start,low_clearance.pK_lower.periodicDose.absorptionLumen.rising,low_clearance.pK_lower.central.rising,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1) * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (300): * Single equations (assignments): 282 * Array equations: 0 * Algorithm blocks: 18 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of prepare postOptimizeDAE: time 0.0009091/0.05092, allocations: 1.005 MB / 0.7047 GB, free: 11.03 MB / 0.5418 GB Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0002449/0.05116, allocations: 259 kB / 0.705 GB, free: 10.77 MB / 0.5418 GB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0001554/0.05132, allocations: 157.6 kB / 0.7051 GB, free: 10.62 MB / 0.5418 GB Notification: Performance of postOpt inlineArrayEqn (simulation): time 1.348e-05/0.05133, allocations: 20 kB / 0.7051 GB, free: 10.6 MB / 0.5418 GB Notification: Performance of postOpt constantLinearSystem (simulation): time 2.349e-05/0.05135, allocations: 0 / 0.7051 GB, free: 10.6 MB / 0.5418 GB Notification: Performance of postOpt simplifysemiLinear (simulation): time 1.33e-05/0.05137, allocations: 11.97 kB / 0.7052 GB, free: 10.59 MB / 0.5418 GB Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.004134/0.0555, allocations: 4.445 MB / 0.7095 GB, free: 5.949 MB / 0.5418 GB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 5.71e-06/0.05551, allocations: 3.938 kB / 0.7095 GB, free: 5.945 MB / 0.5418 GB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0008135/0.05632, allocations: 319.6 kB / 0.7098 GB, free: 5.633 MB / 0.5418 GB Notification: Performance of postOpt tearingSystem (simulation): time 9.788e-06/0.05633, allocations: 8 kB / 0.7098 GB, free: 5.625 MB / 0.5418 GB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 0.0001097/0.05644, allocations: 79.95 kB / 0.7099 GB, free: 5.547 MB / 0.5418 GB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 5.67e-06/0.05645, allocations: 7.938 kB / 0.7099 GB, free: 5.539 MB / 0.5418 GB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 1.844e-06/0.05645, allocations: 4 kB / 0.7099 GB, free: 5.535 MB / 0.5418 GB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.002821/0.05927, allocations: 3.844 MB / 0.7137 GB, free: 1.457 MB / 0.5418 GB Notification: Performance of postOpt removeConstants (simulation): time 0.0004637/0.05973, allocations: 390.3 kB / 0.714 GB, free: 1.078 MB / 0.5418 GB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0002203/0.05995, allocations: 108 kB / 0.7141 GB, free: 0.9727 MB / 0.5418 GB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0004966/0.06045, allocations: 83.94 kB / 0.7142 GB, free: 0.8906 MB / 0.5418 GB Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0002598/0.06071, allocations: 195.7 kB / 0.7144 GB, free: 0.6992 MB / 0.5418 GB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 7.958e-05/0.06079, allocations: 71.97 kB / 0.7145 GB, free: 0.6289 MB / 0.5418 GB Notification: Performance of sorting global known variables: time 0.0004811/0.06127, allocations: 0.5607 MB / 0.715 GB, free: 60 kB / 0.5418 GB Notification: Performance of sort global known variables: time 1e-07/0.06127, allocations: 0 / 0.715 GB, free: 60 kB / 0.5418 GB Notification: Performance of remove unused functions: time 0.00116/0.06243, allocations: 488 kB / 0.7155 GB, free: 15.57 MB / 0.5574 GB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 6 * Number of states: 42 (low_clearance.pK_lower.central.C,low_clearance.pK_lower.central.AUC,low_clearance.pK_lower.elim.MExc,low_clearance.pK_lower.periodicDose.TotalCumulativeMass,low_clearance.pK_lower.periodicDose.absorptionLumen.C,low_clearance.pK_lower.periodicDose.absorptionLumen.AUC,low_clearance.pK_lower.periodicDose.variableDose.TotalCumulativeMass,low_clearance.pK_1C_Lithium_upper.central.C,low_clearance.pK_1C_Lithium_upper.central.AUC,low_clearance.pK_1C_Lithium_upper.elim.MExc,low_clearance.pK_1C_Lithium_upper.periodicDose.TotalCumulativeMass,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.C,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.AUC,low_clearance.pK_1C_Lithium_upper.periodicDose.variableDose.TotalCumulativeMass,low_clearance.pK_1C_Lithium.central.C,low_clearance.pK_1C_Lithium.central.AUC,low_clearance.pK_1C_Lithium.elim.MExc,low_clearance.pK_1C_Lithium.periodicDose.TotalCumulativeMass,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.C,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.AUC,low_clearance.pK_1C_Lithium.periodicDose.variableDose.TotalCumulativeMass,normal.pK_lower.central.C,normal.pK_lower.central.AUC,normal.pK_lower.elim.MExc,normal.pK_lower.periodicDose.TotalCumulativeMass,normal.pK_lower.periodicDose.absorptionLumen.C,normal.pK_lower.periodicDose.absorptionLumen.AUC,normal.pK_lower.periodicDose.variableDose.TotalCumulativeMass,normal.pK_1C_Lithium_upper.central.C,normal.pK_1C_Lithium_upper.central.AUC,normal.pK_1C_Lithium_upper.elim.MExc,normal.pK_1C_Lithium_upper.periodicDose.TotalCumulativeMass,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.C,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.AUC,normal.pK_1C_Lithium_upper.periodicDose.variableDose.TotalCumulativeMass,normal.pK_1C_Lithium.central.C,normal.pK_1C_Lithium.central.AUC,normal.pK_1C_Lithium.elim.MExc,normal.pK_1C_Lithium.periodicDose.TotalCumulativeMass,normal.pK_1C_Lithium.periodicDose.absorptionLumen.C,normal.pK_1C_Lithium.periodicDose.absorptionLumen.AUC,normal.pK_1C_Lithium.periodicDose.variableDose.TotalCumulativeMass) * Number of discrete variables: 78 ($whenCondition1,$whenCondition2,$whenCondition3,$whenCondition4,$whenCondition5,low_clearance.pK_lower.central.Cmax,low_clearance.pK_lower.central.Cmin,low_clearance.pK_lower.central.rising,low_clearance.pK_lower.periodicDose.absorptionLumen.Cmax,low_clearance.pK_lower.periodicDose.absorptionLumen.Cmin,low_clearance.pK_lower.periodicDose.absorptionLumen.rising,low_clearance.pK_lower.periodicDose.pulse.T_start,low_clearance.pK_lower.periodicDose.pulse.count,$whenCondition6,$whenCondition7,$whenCondition8,$whenCondition9,$whenCondition10,low_clearance.pK_1C_Lithium_upper.central.Cmax,low_clearance.pK_1C_Lithium_upper.central.Cmin,low_clearance.pK_1C_Lithium_upper.central.rising,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,low_clearance.pK_1C_Lithium_upper.periodicDose.pulse.T_start,low_clearance.pK_1C_Lithium_upper.periodicDose.pulse.count,$whenCondition11,$whenCondition12,$whenCondition13,$whenCondition14,$whenCondition15,low_clearance.pK_1C_Lithium.central.Cmax,low_clearance.pK_1C_Lithium.central.Cmin,low_clearance.pK_1C_Lithium.central.rising,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.rising,low_clearance.pK_1C_Lithium.periodicDose.pulse.T_start,low_clearance.pK_1C_Lithium.periodicDose.pulse.count,$whenCondition16,$whenCondition17,$whenCondition18,$whenCondition19,$whenCondition20,normal.pK_lower.central.Cmax,normal.pK_lower.central.Cmin,normal.pK_lower.central.rising,normal.pK_lower.periodicDose.absorptionLumen.Cmax,normal.pK_lower.periodicDose.absorptionLumen.Cmin,normal.pK_lower.periodicDose.absorptionLumen.rising,normal.pK_lower.periodicDose.pulse.T_start,normal.pK_lower.periodicDose.pulse.count,$whenCondition21,$whenCondition22,$whenCondition23,$whenCondition24,$whenCondition25,normal.pK_1C_Lithium_upper.central.Cmax,normal.pK_1C_Lithium_upper.central.Cmin,normal.pK_1C_Lithium_upper.central.rising,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,normal.pK_1C_Lithium_upper.periodicDose.pulse.T_start,normal.pK_1C_Lithium_upper.periodicDose.pulse.count,$whenCondition26,$whenCondition27,$whenCondition28,$whenCondition29,$whenCondition30,normal.pK_1C_Lithium.central.Cmax,normal.pK_1C_Lithium.central.Cmin,normal.pK_1C_Lithium.central.rising,normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,normal.pK_1C_Lithium.periodicDose.absorptionLumen.rising,normal.pK_1C_Lithium.periodicDose.pulse.T_start,normal.pK_1C_Lithium.periodicDose.pulse.count) * Number of discrete states: 66 (normal.pK_1C_Lithium.periodicDose.pulse.count,normal.pK_1C_Lithium.central.Cmin,$whenCondition30,normal.pK_1C_Lithium.central.Cmax,$whenCondition29,normal.pK_1C_Lithium.central.rising,normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,$whenCondition28,normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,$whenCondition27,normal.pK_1C_Lithium.periodicDose.absorptionLumen.rising,normal.pK_1C_Lithium_upper.periodicDose.pulse.count,normal.pK_1C_Lithium_upper.central.Cmin,$whenCondition25,normal.pK_1C_Lithium_upper.central.Cmax,$whenCondition24,normal.pK_1C_Lithium_upper.central.rising,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,$whenCondition23,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,$whenCondition22,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,normal.pK_lower.periodicDose.pulse.count,normal.pK_lower.central.Cmin,$whenCondition20,normal.pK_lower.central.Cmax,$whenCondition19,normal.pK_lower.central.rising,normal.pK_lower.periodicDose.absorptionLumen.Cmin,$whenCondition18,normal.pK_lower.periodicDose.absorptionLumen.Cmax,$whenCondition17,normal.pK_lower.periodicDose.absorptionLumen.rising,low_clearance.pK_1C_Lithium.periodicDose.pulse.count,low_clearance.pK_1C_Lithium.central.Cmin,$whenCondition15,low_clearance.pK_1C_Lithium.central.Cmax,$whenCondition14,low_clearance.pK_1C_Lithium.central.rising,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,$whenCondition13,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,$whenCondition12,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.rising,low_clearance.pK_1C_Lithium_upper.periodicDose.pulse.count,low_clearance.pK_1C_Lithium_upper.central.Cmin,$whenCondition10,low_clearance.pK_1C_Lithium_upper.central.Cmax,$whenCondition9,low_clearance.pK_1C_Lithium_upper.central.rising,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,$whenCondition8,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,$whenCondition7,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,low_clearance.pK_lower.periodicDose.pulse.count,low_clearance.pK_lower.central.Cmin,$whenCondition5,low_clearance.pK_lower.central.Cmax,$whenCondition4,low_clearance.pK_lower.central.rising,low_clearance.pK_lower.periodicDose.absorptionLumen.Cmin,$whenCondition3,low_clearance.pK_lower.periodicDose.absorptionLumen.Cmax,$whenCondition2,low_clearance.pK_lower.periodicDose.absorptionLumen.rising) * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (174): * Single equations (assignments): 150 * Array equations: 0 * Algorithm blocks: 12 * Record equations: 0 * When equations: 12 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of Backend phase and start with SimCode phase: time 0.0002556/0.06269, allocations: 317 kB / 0.7158 GB, free: 15.25 MB / 0.5574 GB Notification: Performance of simCode: created initialization part: time 0.002048/0.06473, allocations: 3.019 MB / 0.7187 GB, free: 11.83 MB / 0.5574 GB Notification: Performance of simCode: created event and clocks part: time 1.883e-06/0.06473, allocations: 0 / 0.7187 GB, free: 11.83 MB / 0.5574 GB Notification: Performance of simCode: created simulation system equations: time 0.0009952/0.06573, allocations: 1.632 MB / 0.7203 GB, free: 9.977 MB / 0.5574 GB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.001459/0.06719, allocations: 0.5686 MB / 0.7209 GB, free: 9.465 MB / 0.5574 GB Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.005402/0.07259, allocations: 4.505 MB / 0.7253 GB, free: 4.961 MB / 0.5574 GB Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0002225/0.07281, allocations: 296.5 kB / 0.7256 GB, free: 4.648 MB / 0.5574 GB Notification: Performance of simCode: alias equations: time 0.0005256/0.07334, allocations: 187.5 kB / 0.7257 GB, free: 4.469 MB / 0.5574 GB Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0002525/0.07359, allocations: 132.5 kB / 0.7259 GB, free: 4.34 MB / 0.5574 GB Notification: Performance of SimCode: time 9.62e-07/0.07359, allocations: 0 / 0.7259 GB, free: 4.34 MB / 0.5574 GB Notification: Performance of Templates: time 0.03207/0.1057, allocations: 31.81 MB / 0.7569 GB, free: 6.016 MB / 0.5887 GB " [Timeout remaining time 660] make -j1 -f Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment.makefile [Timeout 660] (rm -f Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment.sim & ./Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment -abortSlowSimulation -alarm=240 -lv LOG_STATS > Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment.pipe 2>&1) [Timeout 240] [Calling sys.exit(0), Time elapsed: 5.201941967941821]