Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001015/0.001015, allocations: 93.06 kB / 19.65 MB, free: 280 kB / 13.93 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001002/0.001002, allocations: 173 kB / 23.02 MB, free: 1.551 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9162/0.9162, allocations: 177.2 MB / 203.4 MB, free: 5.633 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180]
"[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory.
Missing names are:
	Paracetamol_Experiment
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.577/1.577, allocations: 273.5 MB / 0.5209 GB, free: 14.84 MB / 458.7 MB
"
[Timeout remaining time 178]
Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK,tolerance=1e-06,outputFormat="empty",numberOfIntervals=50000,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK")
translateModel(Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK,tolerance=1e-06,outputFormat="empty",numberOfIntervals=50000,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.392e-06/1.392e-06, allocations: 0 / 0.647 GB, free: 38.77 MB / 0.5262 GB
Notification: Performance of FrontEnd - Absyn->SCode: time 1.835e-05/1.974e-05, allocations: 2.312 kB / 0.647 GB, free: 38.77 MB / 0.5262 GB
Notification: Performance of NFInst.instantiate(Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK): time 0.001599/0.001618, allocations: 1.29 MB / 0.6482 GB, free: 37.92 MB / 0.5262 GB
Notification: Performance of NFInst.instExpressions: time 0.0001803/0.001799, allocations: 56.34 kB / 0.6483 GB, free: 37.88 MB / 0.5262 GB
Notification: Performance of NFInst.updateImplicitVariability: time 3.101e-05/0.00183, allocations: 0 / 0.6483 GB, free: 37.88 MB / 0.5262 GB
Notification: Performance of NFTyping.typeComponents: time 8.112e-05/0.001911, allocations: 5.25 kB / 0.6483 GB, free: 37.88 MB / 0.5262 GB
Notification: Performance of NFTyping.typeBindings: time 3.82e-05/0.001949, allocations: 4.969 kB / 0.6483 GB, free: 37.88 MB / 0.5262 GB
Notification: Performance of NFTyping.typeClassSections: time 0.0001465/0.002096, allocations: 18.31 kB / 0.6483 GB, free: 37.87 MB / 0.5262 GB
Notification: Performance of NFFlatten.flatten: time 0.0001347/0.00223, allocations: 146 kB / 0.6484 GB, free: 37.84 MB / 0.5262 GB
Notification: Performance of NFFlatten.resolveConnections: time 3.564e-05/0.002266, allocations: 5.484 kB / 0.6484 GB, free: 37.84 MB / 0.5262 GB
Notification: Performance of NFEvalConstants.evaluate: time 9.983e-05/0.002366, allocations: 78.23 kB / 0.6485 GB, free: 37.81 MB / 0.5262 GB
Notification: Performance of NFSimplifyModel.simplify: time 0.0001256/0.002491, allocations: 77.28 kB / 0.6486 GB, free: 37.8 MB / 0.5262 GB
Notification: Performance of NFPackage.collectConstants: time 3.112e-05/0.002522, allocations: 9.969 kB / 0.6486 GB, free: 37.8 MB / 0.5262 GB
Notification: Performance of NFFlatten.collectFunctions: time 1.649e-05/0.002539, allocations: 7.75 kB / 0.6486 GB, free: 37.8 MB / 0.5262 GB
Notification: Performance of NFScalarize.scalarize: time 3.254e-05/0.002571, allocations: 39.89 kB / 0.6486 GB, free: 37.79 MB / 0.5262 GB
Notification: Performance of NFVerifyModel.verify: time 3.779e-05/0.002609, allocations: 26.22 kB / 0.6487 GB, free: 37.78 MB / 0.5262 GB
Notification: Performance of NFConvertDAE.convert: time 0.0001024/0.002712, allocations: 96.83 kB / 0.6488 GB, free: 37.75 MB / 0.5262 GB
Notification: Performance of FrontEnd - DAE generated: time 1.593e-06/0.002713, allocations: 1.312 kB / 0.6488 GB, free: 37.75 MB / 0.5262 GB
Notification: Performance of FrontEnd: time 7.52e-07/0.002714, allocations: 0 / 0.6488 GB, free: 37.75 MB / 0.5262 GB
Notification: Performance of Transformations before backend: time 4.398e-06/0.002718, allocations: 0 / 0.6488 GB, free: 37.75 MB / 0.5262 GB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 12
 * Number of variables: 12
Notification: Performance of Generate backend data structure: time 0.0008823/0.003601, allocations: 0.604 MB / 0.6494 GB, free: 37.36 MB / 0.5262 GB
Notification: Performance of prepare preOptimizeDAE: time 3.005e-05/0.003631, allocations: 8.125 kB / 0.6494 GB, free: 37.36 MB / 0.5262 GB
Notification: Performance of preOpt normalInlineFunction (simulation): time 4.183e-05/0.003673, allocations: 6.719 kB / 0.6494 GB, free: 37.36 MB / 0.5262 GB
Notification: Performance of preOpt evaluateParameters (simulation): time 9.889e-05/0.003771, allocations: 129.4 kB / 0.6495 GB, free: 37.22 MB / 0.5262 GB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 8.466e-06/0.00378, allocations: 8.312 kB / 0.6495 GB, free: 37.21 MB / 0.5262 GB
Notification: Performance of preOpt expandDerOperator (simulation): time 1.375e-05/0.003794, allocations: 1.844 kB / 0.6495 GB, free: 37.21 MB / 0.5262 GB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.0002589/0.004053, allocations: 155.5 kB / 0.6497 GB, free: 37.14 MB / 0.5262 GB
Notification: Performance of preOpt findStateOrder (simulation): time 7.614e-06/0.00406, allocations: 6.875 kB / 0.6497 GB, free: 37.13 MB / 0.5262 GB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 1.172e-05/0.004072, allocations: 4.375 kB / 0.6497 GB, free: 37.13 MB / 0.5262 GB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 7.404e-06/0.004079, allocations: 2.438 kB / 0.6497 GB, free: 37.13 MB / 0.5262 GB
Notification: Performance of preOpt removeEqualRHS (simulation): time 9.027e-05/0.00417, allocations: 29.23 kB / 0.6497 GB, free: 37.12 MB / 0.5262 GB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.0001887/0.004358, allocations: 274.3 kB / 0.65 GB, free: 36.84 MB / 0.5262 GB
Notification: Performance of preOpt comSubExp (simulation): time 7.365e-05/0.004432, allocations: 48.95 kB / 0.65 GB, free: 36.79 MB / 0.5262 GB
Notification: Performance of preOpt resolveLoops (simulation): time 6.797e-05/0.0045, allocations: 38.52 kB / 0.65 GB, free: 36.78 MB / 0.5262 GB
Notification: Performance of preOpt evalFunc (simulation): time 1.027e-05/0.00451, allocations: 3.156 kB / 0.65 GB, free: 36.78 MB / 0.5262 GB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 1.429e-05/0.004524, allocations: 42.95 kB / 0.6501 GB, free: 36.73 MB / 0.5262 GB
Notification: Performance of pre-optimization done (n=11): time 9.22e-07/0.004525, allocations: 2.375 kB / 0.6501 GB, free: 36.73 MB / 0.5262 GB
Notification: Performance of matching and sorting (n=11): time 0.0002472/0.004773, allocations: 102.1 kB / 0.6502 GB, free: 36.68 MB / 0.5262 GB
Notification: Performance of inlineWhenForInitialization (initialization): time 2.053e-05/0.004793, allocations: 57.16 kB / 0.6502 GB, free: 36.62 MB / 0.5262 GB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 5.169e-05/0.004845, allocations: 173.5 kB / 0.6504 GB, free: 36.45 MB / 0.5262 GB
Notification: Performance of collectPreVariables (initialization): time 1.267e-05/0.004858, allocations: 29.64 kB / 0.6504 GB, free: 36.41 MB / 0.5262 GB
Notification: Performance of collectInitialEqns (initialization): time 2.876e-05/0.004886, allocations: 137.2 kB / 0.6506 GB, free: 36.27 MB / 0.5262 GB
Notification: Performance of collectInitialBindings (initialization): time 2.184e-05/0.004908, allocations: 43.44 kB / 0.6506 GB, free: 36.24 MB / 0.5262 GB
Notification: Performance of simplifyInitialFunctions (initialization): time 4.137e-05/0.004949, allocations: 34.39 kB / 0.6506 GB, free: 36.21 MB / 0.5262 GB
Notification: Performance of setup shared object (initialization): time 4.534e-05/0.004995, allocations: 0.4919 MB / 0.6511 GB, free: 35.71 MB / 0.5262 GB
Notification: Performance of preBalanceInitialSystem (initialization): time 5.049e-05/0.005045, allocations: 16.53 kB / 0.6511 GB, free: 35.71 MB / 0.5262 GB
Notification: Performance of partitionIndependentBlocks (initialization): time 5.545e-05/0.005101, allocations: 38.36 kB / 0.6512 GB, free: 35.68 MB / 0.5262 GB
Notification: Performance of analyzeInitialSystem (initialization): time 0.0001034/0.005204, allocations: 53.03 kB / 0.6512 GB, free: 35.65 MB / 0.5262 GB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 1.693e-06/0.005206, allocations: 0 / 0.6512 GB, free: 35.65 MB / 0.5262 GB
Notification: Performance of matching and sorting (n=12) (initialization): time 0.0001619/0.005368, allocations: 97.06 kB / 0.6513 GB, free: 35.61 MB / 0.5262 GB
Notification: Performance of prepare postOptimizeDAE: time 1.002e-05/0.005378, allocations: 3.625 kB / 0.6513 GB, free: 35.61 MB / 0.5262 GB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 4.559e-06/0.005382, allocations: 10.3 kB / 0.6513 GB, free: 35.6 MB / 0.5262 GB
Notification: Performance of postOpt tearingSystem (initialization): time 1.153e-05/0.005394, allocations: 0 / 0.6513 GB, free: 35.6 MB / 0.5262 GB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.000209/0.005603, allocations: 71.47 kB / 0.6514 GB, free: 35.6 MB / 0.5262 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 6.112e-06/0.005609, allocations: 13.8 kB / 0.6514 GB, free: 35.6 MB / 0.5262 GB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0001581/0.005767, allocations: 63.69 kB / 0.6515 GB, free: 35.59 MB / 0.5262 GB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 1.243e-05/0.00578, allocations: 3.5 kB / 0.6515 GB, free: 35.59 MB / 0.5262 GB
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 2
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (12):
 * Single equations (assignments): 12
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of prepare postOptimizeDAE: time 4.556e-05/0.005825, allocations: 159 kB / 0.6516 GB, free: 35.43 MB / 0.5262 GB
Notification: Performance of postOpt lateInlineFunction (simulation): time 1.793e-05/0.005843, allocations: 9.828 kB / 0.6516 GB, free: 35.42 MB / 0.5262 GB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0002351/0.006078, allocations: 172.9 kB / 0.6518 GB, free: 35.34 MB / 0.5262 GB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 2.595e-06/0.006081, allocations: 6.156 kB / 0.6518 GB, free: 35.33 MB / 0.5262 GB
Notification: Performance of postOpt constantLinearSystem (simulation): time 3.046e-06/0.006084, allocations: 2.375 kB / 0.6518 GB, free: 35.33 MB / 0.5262 GB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 3.346e-06/0.006087, allocations: 4.016 kB / 0.6518 GB, free: 35.33 MB / 0.5262 GB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 8.669e-05/0.006174, allocations: 157.1 kB / 0.652 GB, free: 35.17 MB / 0.5262 GB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 1.533e-06/0.006175, allocations: 3.938 kB / 0.652 GB, free: 35.16 MB / 0.5262 GB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0001946/0.00637, allocations: 85.62 kB / 0.652 GB, free: 35.16 MB / 0.5262 GB
Notification: Performance of postOpt tearingSystem (simulation): time 1.573e-06/0.006372, allocations: 1.422 kB / 0.652 GB, free: 35.16 MB / 0.5262 GB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 1.117e-05/0.006383, allocations: 3.188 kB / 0.652 GB, free: 35.16 MB / 0.5262 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 1.503e-06/0.006384, allocations: 0 / 0.652 GB, free: 35.16 MB / 0.5262 GB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 2.344e-06/0.006387, allocations: 10.36 kB / 0.6521 GB, free: 35.16 MB / 0.5262 GB
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.0001857/0.006572, allocations: 176.9 kB / 0.6522 GB, free: 35.04 MB / 0.5262 GB
Notification: Performance of postOpt removeConstants (simulation): time 1.044e-05/0.006583, allocations: 11.83 kB / 0.6522 GB, free: 35.03 MB / 0.5262 GB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 1.624e-05/0.006599, allocations: 7.312 kB / 0.6522 GB, free: 35.03 MB / 0.5262 GB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0001419/0.006741, allocations: 52.61 kB / 0.6523 GB, free: 35.03 MB / 0.5262 GB
Notification: Performance of postOpt findZeroCrossings (simulation): time 5.403e-05/0.006795, allocations: 31.31 kB / 0.6523 GB, free: 35.02 MB / 0.5262 GB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 1.04e-05/0.006805, allocations: 9.625 kB / 0.6523 GB, free: 35.01 MB / 0.5262 GB
Notification: Performance of sorting global known variables: time 2.291e-05/0.006828, allocations: 131.1 kB / 0.6525 GB, free: 34.89 MB / 0.5262 GB
Notification: Performance of sort global known variables: time 8e-08/0.006828, allocations: 1.031 kB / 0.6525 GB, free: 34.89 MB / 0.5262 GB
Notification: Performance of remove unused functions: time 0.0001366/0.006965, allocations: 29.47 kB / 0.6525 GB, free: 34.89 MB / 0.5262 GB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 1
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (21):
 * Single equations (assignments): 21
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of Backend phase and start with SimCode phase: time 5.281e-05/0.007018, allocations: 103.2 kB / 0.6526 GB, free: 34.8 MB / 0.5262 GB
Notification: Performance of simCode: created initialization part: time 0.0001661/0.007184, allocations: 73.41 kB / 0.6527 GB, free: 34.78 MB / 0.5262 GB
Notification: Performance of simCode: created event and clocks part: time 1.082e-06/0.007185, allocations: 0 / 0.6527 GB, free: 34.78 MB / 0.5262 GB
Notification: Performance of simCode: created simulation system equations: time 7.91e-05/0.007264, allocations: 64.36 kB / 0.6527 GB, free: 34.75 MB / 0.5262 GB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0001247/0.007389, allocations: 13.88 kB / 0.6527 GB, free: 34.75 MB / 0.5262 GB
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.0004651/0.007854, allocations: 253.8 kB / 0.653 GB, free: 34.57 MB / 0.5262 GB
Notification: Performance of simCode: some other stuff during SimCode phase: time 2.466e-05/0.007878, allocations: 64.38 kB / 0.653 GB, free: 34.5 MB / 0.5262 GB
Notification: Performance of simCode: alias equations: time 7.263e-05/0.007951, allocations: 33.34 kB / 0.6531 GB, free: 34.5 MB / 0.5262 GB
Notification: Performance of simCode: all other stuff during SimCode phase: time 8.262e-05/0.008034, allocations: 23.17 kB / 0.6531 GB, free: 34.48 MB / 0.5262 GB
Notification: Performance of SimCode: time 4.31e-07/0.008034, allocations: 0 / 0.6531 GB, free: 34.48 MB / 0.5262 GB
Notification: Performance of Templates: time 0.004054/0.01209, allocations: 2.99 MB / 0.656 GB, free: 34.23 MB / 0.5262 GB
"
[Timeout remaining time 660]
make -j1 -f Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.makefile [Timeout 660]
(rm -f Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.sim & ./Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK -abortSlowSimulation -alarm=240  -lv LOG_STATS > Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 4.654832038097084]