Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.0009449/0.0009449, allocations: 93.06 kB / 19.65 MB, free: 280 kB / 13.93 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.0009463/0.0009463, allocations: 169 kB / 23.02 MB, free: 1.547 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.077/1.077, allocations: 177.1 MB / 203.4 MB, free: 5.625 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180]
"[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory.
Missing names are:
	Paracetamol_Experiment
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.624/1.624, allocations: 273.5 MB / 0.5209 GB, free: 14.79 MB / 458.7 MB
"
[Timeout remaining time 178]
Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2,tolerance=1e-12,outputFormat="empty",numberOfIntervals=1000,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2")
translateModel(Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2,tolerance=1e-12,outputFormat="empty",numberOfIntervals=1000,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 2.595e-06/2.595e-06, allocations: 0 / 0.647 GB, free: 38.67 MB / 0.5262 GB
Notification: Performance of FrontEnd - Absyn->SCode: time 1.994e-05/2.253e-05, allocations: 2.312 kB / 0.647 GB, free: 38.67 MB / 0.5262 GB
Notification: Bodylight requested package Modelica of version 4.0.0. Modelica 4.1.0 is used instead which states that it is fully compatible without conversion script needed.
Notification: Automatically loaded package Bodylight 1.0 due to usage.
Notification: Performance of NFInst.instantiate(Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2): time 0.0864/0.08643, allocations: 43.94 MB / 0.6899 GB, free: 14.42 MB / 0.5262 GB
Notification: Performance of NFInst.instExpressions: time 0.004289/0.09071, allocations: 5.245 MB / 0.695 GB, free: 9.156 MB / 0.5262 GB
Notification: Performance of NFInst.updateImplicitVariability: time 0.0001677/0.09088, allocations: 27.75 kB / 0.695 GB, free: 9.129 MB / 0.5262 GB
Notification: Performance of NFTyping.typeComponents: time 0.0001982/0.09108, allocations: 63.27 kB / 0.6951 GB, free: 9.066 MB / 0.5262 GB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.SusceptibleCells.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.SusceptibleCells.Utilities.readReal' contains a call to impure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.SusceptibleCells.Utilities.UnitConversions.findUnit'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.InfectedCells.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.InfectedCells.Utilities.readReal' contains a call to impure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.InfectedCells.Utilities.UnitConversions.findUnit'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.ViralParticles.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.ViralParticles.Utilities.readReal' contains a call to impure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.ViralParticles.Utilities.UnitConversions.findUnit'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.RecoveredCells.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.RecoveredCells.Utilities.readReal' contains a call to impure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.RecoveredCells.Utilities.UnitConversions.findUnit'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.DeadCells.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.DeadCells.Utilities.readReal' contains a call to impure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.DeadCells.Utilities.UnitConversions.findUnit'.
Notification: Performance of NFTyping.typeBindings: time 0.001379/0.09246, allocations: 0.7691 MB / 0.6958 GB, free: 8.297 MB / 0.5262 GB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.SusceptibleCells.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.SusceptibleCells.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.InfectedCells.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.InfectedCells.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.ViralParticles.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.ViralParticles.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.RecoveredCells.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.RecoveredCells.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.DeadCells.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.DeadCells.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
Notification: Performance of NFTyping.typeClassSections: time 0.001146/0.09361, allocations: 0.8409 MB / 0.6967 GB, free: 7.457 MB / 0.5262 GB
Notification: Performance of NFFlatten.flatten: time 0.0003828/0.09399, allocations: 0.5014 MB / 0.6971 GB, free: 6.953 MB / 0.5262 GB
Notification: Performance of NFFlatten.resolveConnections: time 0.0002127/0.0942, allocations: 188.3 kB / 0.6973 GB, free: 6.77 MB / 0.5262 GB
Notification: Performance of NFEvalConstants.evaluate: time 0.0001565/0.09436, allocations: 255.3 kB / 0.6976 GB, free: 6.52 MB / 0.5262 GB
Notification: Performance of NFSimplifyModel.simplify: time 0.0001532/0.09451, allocations: 131.6 kB / 0.6977 GB, free: 6.391 MB / 0.5262 GB
Notification: Performance of NFPackage.collectConstants: time 3.065e-05/0.09454, allocations: 27.94 kB / 0.6977 GB, free: 6.363 MB / 0.5262 GB
Notification: Performance of NFFlatten.collectFunctions: time 3.441e-05/0.09458, allocations: 32 kB / 0.6978 GB, free: 6.332 MB / 0.5262 GB
Notification: Performance of NFScalarize.scalarize: time 6.008e-05/0.09464, allocations: 79.61 kB / 0.6978 GB, free: 6.254 MB / 0.5262 GB
Notification: Performance of NFVerifyModel.verify: time 8.377e-05/0.09472, allocations: 131.6 kB / 0.698 GB, free: 6.125 MB / 0.5262 GB
Notification: Performance of NFConvertDAE.convert: time 0.0003058/0.09502, allocations: 334.7 kB / 0.6983 GB, free: 5.797 MB / 0.5262 GB
Notification: Performance of FrontEnd - DAE generated: time 4.068e-06/0.09503, allocations: 0 / 0.6983 GB, free: 5.797 MB / 0.5262 GB
Notification: Performance of FrontEnd: time 2.144e-06/0.09503, allocations: 0 / 0.6983 GB, free: 5.797 MB / 0.5262 GB
Notification: Performance of Transformations before backend: time 7.514e-06/0.09504, allocations: 4 kB / 0.6983 GB, free: 5.793 MB / 0.5262 GB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 58
 * Number of variables: 58
Notification: Performance of Generate backend data structure: time 0.0006301/0.09567, allocations: 0.7213 MB / 0.699 GB, free: 5.035 MB / 0.5262 GB
Notification: Performance of prepare preOptimizeDAE: time 3.885e-05/0.09571, allocations: 8.031 kB / 0.699 GB, free: 5.027 MB / 0.5262 GB
Notification: Performance of preOpt normalInlineFunction (simulation): time 7.472e-05/0.09578, allocations: 68.66 kB / 0.6991 GB, free: 4.961 MB / 0.5262 GB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.0003551/0.09614, allocations: 356.8 kB / 0.6994 GB, free: 4.586 MB / 0.5262 GB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 2.658e-05/0.09616, allocations: 24.88 kB / 0.6994 GB, free: 4.562 MB / 0.5262 GB
Notification: Performance of preOpt expandDerOperator (simulation): time 3.545e-05/0.0962, allocations: 36.31 kB / 0.6995 GB, free: 4.527 MB / 0.5262 GB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.0002217/0.09642, allocations: 169.4 kB / 0.6996 GB, free: 4.355 MB / 0.5262 GB
Notification: Performance of preOpt findStateOrder (simulation): time 1.389e-05/0.09643, allocations: 3.938 kB / 0.6996 GB, free: 4.352 MB / 0.5262 GB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 1.563e-05/0.09645, allocations: 8 kB / 0.6996 GB, free: 4.344 MB / 0.5262 GB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 9.739e-06/0.09646, allocations: 8 kB / 0.6996 GB, free: 4.336 MB / 0.5262 GB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0001217/0.09658, allocations: 86.94 kB / 0.6997 GB, free: 4.254 MB / 0.5262 GB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.0007744/0.09736, allocations: 0.6924 MB / 0.7004 GB, free: 3.523 MB / 0.5262 GB
Notification: Performance of preOpt comSubExp (simulation): time 0.0001777/0.09753, allocations: 118.5 kB / 0.7005 GB, free: 3.398 MB / 0.5262 GB
Notification: Performance of preOpt resolveLoops (simulation): time 6.975e-05/0.0976, allocations: 62.23 kB / 0.7006 GB, free: 3.336 MB / 0.5262 GB
Notification: Performance of preOpt evalFunc (simulation): time 2.304e-05/0.09763, allocations: 8 kB / 0.7006 GB, free: 3.328 MB / 0.5262 GB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 1.969e-05/0.09765, allocations: 37.33 kB / 0.7006 GB, free: 3.281 MB / 0.5262 GB
Notification: Performance of pre-optimization done (n=20): time 1.983e-06/0.09765, allocations: 3.938 kB / 0.7006 GB, free: 3.277 MB / 0.5262 GB
Notification: Performance of matching and sorting (n=20): time 0.000295/0.09794, allocations: 201.6 kB / 0.7008 GB, free: 3.074 MB / 0.5262 GB
Notification: Performance of inlineWhenForInitialization (initialization): time 2.781e-05/0.09797, allocations: 55.41 kB / 0.7009 GB, free: 3.008 MB / 0.5262 GB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0002037/0.09818, allocations: 378.6 kB / 0.7012 GB, free: 2.625 MB / 0.5262 GB
Notification: Performance of collectPreVariables (initialization): time 1.36e-05/0.09819, allocations: 33.7 kB / 0.7012 GB, free: 2.586 MB / 0.5262 GB
Notification: Performance of collectInitialEqns (initialization): time 9.057e-05/0.09828, allocations: 263.3 kB / 0.7015 GB, free: 2.32 MB / 0.5262 GB
Notification: Performance of collectInitialBindings (initialization): time 3.46e-05/0.09831, allocations: 75.33 kB / 0.7016 GB, free: 2.246 MB / 0.5262 GB
Notification: Performance of simplifyInitialFunctions (initialization): time 6.108e-05/0.09838, allocations: 75.36 kB / 0.7016 GB, free: 2.164 MB / 0.5262 GB
Notification: Performance of setup shared object (initialization): time 7.611e-05/0.09845, allocations: 0.5118 MB / 0.7021 GB, free: 1.641 MB / 0.5262 GB
Notification: Performance of preBalanceInitialSystem (initialization): time 6.639e-05/0.09852, allocations: 43.97 kB / 0.7022 GB, free: 1.598 MB / 0.5262 GB
Notification: Performance of partitionIndependentBlocks (initialization): time 9.404e-05/0.09861, allocations: 127 kB / 0.7023 GB, free: 1.445 MB / 0.5262 GB
Notification: Performance of analyzeInitialSystem (initialization): time 0.0002886/0.0989, allocations: 248.9 kB / 0.7025 GB, free: 1.172 MB / 0.5262 GB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 3.146e-06/0.0989, allocations: 0 / 0.7025 GB, free: 1.172 MB / 0.5262 GB
Notification: Performance of matching and sorting (n=41) (initialization): time 0.0002293/0.09913, allocations: 266.7 kB / 0.7028 GB, free: 0.9102 MB / 0.5262 GB
Notification: Performance of prepare postOptimizeDAE: time 1.231e-05/0.09914, allocations: 4 kB / 0.7028 GB, free: 0.9062 MB / 0.5262 GB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 5.129e-06/0.09915, allocations: 3.938 kB / 0.7028 GB, free: 0.9023 MB / 0.5262 GB
Notification: Performance of postOpt tearingSystem (initialization): time 1.498e-05/0.09917, allocations: 4 kB / 0.7028 GB, free: 0.8984 MB / 0.5262 GB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0001627/0.09933, allocations: 71.91 kB / 0.7029 GB, free: 0.8281 MB / 0.5262 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 6.542e-06/0.09933, allocations: 4 kB / 0.7029 GB, free: 0.8242 MB / 0.5262 GB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 6.253e-05/0.0994, allocations: 23.78 kB / 0.7029 GB, free: 0.8008 MB / 0.5262 GB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 1.213e-05/0.09941, allocations: 16 kB / 0.7029 GB, free: 0.7852 MB / 0.5262 GB
Warning: The initial conditions are over specified. The following 1 initial equations are redundant, so they are removed from the initialization system:
         ViralParticles.state = ViralParticles.state_start.
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 7
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (41):
 * Single equations (assignments): 41
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of prepare postOptimizeDAE: time 9.137e-05/0.0995, allocations: 176.4 kB / 0.7031 GB, free: 0.6016 MB / 0.5262 GB
Notification: Performance of postOpt lateInlineFunction (simulation): time 3.195e-05/0.09953, allocations: 43.77 kB / 0.7031 GB, free: 0.5586 MB / 0.5262 GB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0001873/0.09972, allocations: 167.5 kB / 0.7033 GB, free: 400 kB / 0.5262 GB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 3.086e-06/0.09972, allocations: 4 kB / 0.7033 GB, free: 396 kB / 0.5262 GB
Notification: Performance of postOpt constantLinearSystem (simulation): time 3.827e-06/0.09973, allocations: 0 / 0.7033 GB, free: 396 kB / 0.5262 GB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 5.33e-06/0.09973, allocations: 3.984 kB / 0.7033 GB, free: 392 kB / 0.5262 GB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.000201/0.09993, allocations: 260.5 kB / 0.7035 GB, free: 96 kB / 0.5262 GB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 2.044e-06/0.09993, allocations: 3.984 kB / 0.7035 GB, free: 92 kB / 0.5262 GB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0001078/0.1, allocations: 39.92 kB / 0.7036 GB, free: 52 kB / 0.5262 GB
Notification: Performance of postOpt tearingSystem (simulation): time 2.585e-06/0.1, allocations: 0 / 0.7036 GB, free: 52 kB / 0.5262 GB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 1.502e-05/0.1001, allocations: 4 kB / 0.7036 GB, free: 48 kB / 0.5262 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 2.775e-06/0.1001, allocations: 7.938 kB / 0.7036 GB, free: 40 kB / 0.5262 GB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 1.092e-06/0.1001, allocations: 7.938 kB / 0.7036 GB, free: 32 kB / 0.5262 GB
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.0002972/0.1004, allocations: 343.6 kB / 0.7039 GB, free: 15.68 MB / 0.5418 GB
Notification: Performance of postOpt removeConstants (simulation): time 6.412e-05/0.1004, allocations: 51.67 kB / 0.704 GB, free: 15.62 MB / 0.5418 GB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 2.616e-05/0.1005, allocations: 11.94 kB / 0.704 GB, free: 15.61 MB / 0.5418 GB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 5.39e-05/0.1005, allocations: 0 / 0.704 GB, free: 15.61 MB / 0.5418 GB
Notification: Performance of postOpt findZeroCrossings (simulation): time 4.049e-05/0.1005, allocations: 11.98 kB / 0.704 GB, free: 15.6 MB / 0.5418 GB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 7.905e-06/0.1006, allocations: 8.062 kB / 0.704 GB, free: 15.59 MB / 0.5418 GB
Notification: Performance of sorting global known variables: time 0.000147/0.1007, allocations: 251.1 kB / 0.7043 GB, free: 15.35 MB / 0.5418 GB
Notification: Performance of sort global known variables: time 6e-08/0.1007, allocations: 0 / 0.7043 GB, free: 15.35 MB / 0.5418 GB
Notification: Performance of remove unused functions: time 0.0002048/0.1009, allocations: 83.84 kB / 0.7043 GB, free: 15.27 MB / 0.5418 GB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 1
 * Number of states: 5 (SusceptibleCells.state,InfectedCells.state,ViralParticles.state,RecoveredCells.state,DeadCells.state)
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (20):
 * Single equations (assignments): 20
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of Backend phase and start with SimCode phase: time 9.354e-05/0.101, allocations: 111.2 kB / 0.7044 GB, free: 15.14 MB / 0.5418 GB
Notification: Performance of simCode: created initialization part: time 0.0002342/0.1012, allocations: 148.2 kB / 0.7046 GB, free: 15 MB / 0.5418 GB
Notification: Performance of simCode: created event and clocks part: time 1.603e-06/0.1012, allocations: 0 / 0.7046 GB, free: 15 MB / 0.5418 GB
Notification: Performance of simCode: created simulation system equations: time 6.833e-05/0.1013, allocations: 65.66 kB / 0.7046 GB, free: 14.93 MB / 0.5418 GB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0003068/0.1016, allocations: 81.7 kB / 0.7047 GB, free: 14.85 MB / 0.5418 GB
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.001043/0.1027, allocations: 0.5927 MB / 0.7053 GB, free: 14.23 MB / 0.5418 GB
Notification: Performance of simCode: some other stuff during SimCode phase: time 7.067e-05/0.1027, allocations: 100.6 kB / 0.7054 GB, free: 14.11 MB / 0.5418 GB
Notification: Performance of simCode: alias equations: time 7.955e-05/0.1028, allocations: 42.3 kB / 0.7054 GB, free: 14.07 MB / 0.5418 GB
Notification: Performance of simCode: all other stuff during SimCode phase: time 5.999e-05/0.1029, allocations: 36.48 kB / 0.7055 GB, free: 14.04 MB / 0.5418 GB
Notification: Performance of SimCode: time 1.082e-06/0.1029, allocations: 0 / 0.7055 GB, free: 14.04 MB / 0.5418 GB
Notification: Performance of Templates: time 0.005883/0.1087, allocations: 3.508 MB / 0.7089 GB, free: 10.79 MB / 0.5418 GB
"
[Timeout remaining time 660]
make -j1 -f Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.makefile [Timeout 660]
(rm -f Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.sim & ./Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2 -abortSlowSimulation -alarm=240  -lv LOG_STATS > Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 5.212529296055436]