Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.0008777/0.0008777, allocations: 93.06 kB / 19.65 MB, free: 272 kB / 13.93 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.0009248/0.0009248, allocations: 169 kB / 23.02 MB, free: 1.539 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.978/0.978, allocations: 177.1 MB / 203.4 MB, free: 5.621 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo): time 0.1114/0.1114, allocations: 17.46 MB / 277.4 MB, free: 11.55 MB / 266.7 MB
"
[Timeout remaining time 180]
Using package Chemical with version 2.0.1 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Chemical.Obsolete.Examples.Hemoglobin.Joels57,tolerance=1e-05,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57")
translateModel(Chemical.Obsolete.Examples.Hemoglobin.Joels57,tolerance=1e-05,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 2.394e-06/2.394e-06, allocations: 0 / 353.6 MB, free: 9.836 MB / 282.7 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 3.256e-05/3.495e-05, allocations: 6.25 kB / 353.6 MB, free: 9.828 MB / 282.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Obsolete.mo:14335:7-14335:66:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Obsolete.mo:14335:7-14335:66:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"system\" component but
an inner \"system\" component is not defined.
For simulation drag Modelica.Fluid.System into your model
to specify system properties.
Notification: Performance of NFInst.instantiate(Chemical.Obsolete.Examples.Hemoglobin.Joels57): time 0.215/0.215, allocations: 80.24 MB / 433.8 MB, free: 12.43 MB / 330.7 MB
Notification: Performance of NFInst.instExpressions: time 0.06351/0.2785, allocations: 66.77 MB / 0.4888 GB, free: 2.762 MB / 362.7 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.01164/0.2902, allocations: 234.1 kB / 0.4891 GB, free: 2.531 MB / 362.7 MB
Notification: Performance of NFTyping.typeComponents: time 0.009574/0.2997, allocations: 2.733 MB / 0.4917 GB, free: 15.77 MB / 378.7 MB
Notification: Performance of NFTyping.typeBindings: time 0.0296/0.3293, allocations: 9.399 MB / 0.5009 GB, free: 6.305 MB / 378.7 MB
Notification: Performance of NFTyping.typeClassSections: time 0.03357/0.3629, allocations: 14.84 MB / 0.5154 GB, free: 7.41 MB / 394.7 MB
Notification: Performance of NFFlatten.flatten: time 0.4294/0.7923, allocations: 91.33 MB / 0.6046 GB, free: 12.35 MB / 442.8 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.07876/0.871, allocations: 54.62 MB / 0.6579 GB, free: 9.566 MB / 458.8 MB
Notification: Performance of NFEvalConstants.evaluate: time 0.1423/1.013, allocations: 75.04 MB / 0.7312 GB, free: 2.91 MB / 0.4949 GB
Notification: Performance of NFSimplifyModel.simplify: time 0.5229/1.536, allocations: 51.47 MB / 0.7815 GB, free: 50.62 MB / 0.5107 GB
Notification: Performance of NFPackage.collectConstants: time 0.04707/1.583, allocations: 12.2 MB / 0.7934 GB, free: 50.62 MB / 0.5107 GB
Notification: Performance of NFFlatten.collectFunctions: time 0.06654/1.65, allocations: 17.33 MB / 0.8103 GB, free: 50.62 MB / 0.5107 GB
Notification: Performance of NFScalarize.scalarize: time 0.05728/1.707, allocations: 24.28 MB / 0.834 GB, free: 46.42 MB / 0.5107 GB
Notification: Performance of NFVerifyModel.verify: time 0.0862/1.793, allocations: 31.12 MB / 0.8644 GB, free: 33.69 MB / 0.5107 GB
Notification: Performance of NFConvertDAE.convert: time 0.1623/1.956, allocations: 87 MB / 0.9494 GB, free: 5.488 MB / 0.5575 GB
Notification: Performance of FrontEnd - DAE generated: time 9.307e-06/1.956, allocations: 0 / 0.9494 GB, free: 5.488 MB / 0.5575 GB
Notification: Performance of FrontEnd: time 2.154e-06/1.956, allocations: 0 / 0.9494 GB, free: 5.488 MB / 0.5575 GB
Notification: Performance of Transformations before backend: time 0.0033/1.959, allocations: 0 / 0.9494 GB, free: 5.488 MB / 0.5575 GB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 11424
 * Number of variables: 11424
Notification: Performance of Generate backend data structure: time 0.4647/2.424, allocations: 70.31 MB / 1.018 GB, free: 118.9 MB / 0.5575 GB
Notification: Performance of prepare preOptimizeDAE: time 4.512e-05/2.424, allocations: 7.938 kB / 1.018 GB, free: 118.9 MB / 0.5575 GB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.07895/2.503, allocations: 19.73 MB / 1.037 GB, free: 109.6 MB / 0.5575 GB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.06953/2.572, allocations: 37.73 MB / 1.074 GB, free: 74.69 MB / 0.5575 GB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.005455/2.578, allocations: 9.202 MB / 1.083 GB, free: 64.16 MB / 0.5575 GB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.02033/2.598, allocations: 4.565 MB / 1.088 GB, free: 59.6 MB / 0.5575 GB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.1668/2.765, allocations: 58.04 MB / 1.144 GB, free: 0.7695 MB / 0.5575 GB
Notification: Performance of preOpt findStateOrder (simulation): time 0.001897/2.767, allocations: 27.19 kB / 1.144 GB, free: 0.7578 MB / 0.5575 GB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.02189/2.788, allocations: 1.762 MB / 1.146 GB, free: 15 MB / 0.5732 GB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 0.0007376/2.789, allocations: 1.059 MB / 1.147 GB, free: 13.94 MB / 0.5732 GB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.616/3.405, allocations: 61.5 MB / 1.207 GB, free: 111.9 MB / 0.5734 GB
Warning: The model contains alias variables with redundant start and/or conflicting nominal values. It is recommended to resolve the conflicts, because otherwise the system could be hard to solve. To print the conflicting alias sets and the chosen candidates please use -d=aliasConflicts.
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.9107/4.316, allocations: 280.8 MB / 1.481 GB, free: 87.29 MB / 0.6203 GB
Notification: Performance of preOpt comSubExp (simulation): time 2.354/6.67, allocations: 0.9691 GB / 2.45 GB, free: 113.7 MB / 0.6359 GB
Notification: Performance of preOpt resolveLoops (simulation): time 0.05585/6.725, allocations: 23.28 MB / 2.473 GB, free: 96.96 MB / 0.6359 GB
Notification: Performance of preOpt evalFunc (simulation): time 0.5782/7.304, allocations: 156.8 MB / 2.626 GB, free: 121.4 MB / 0.6359 GB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.0003192/7.304, allocations: 338.5 kB / 2.627 GB, free: 121.3 MB / 0.6359 GB
Notification: Performance of preOpt simplifyInStream (simulation): time 0.08277/7.387, allocations: 27.66 MB / 2.654 GB, free: 116.5 MB / 0.6359 GB
Notification: Performance of pre-optimization done (n=2949): time 0.0002131/7.387, allocations: 0 / 2.654 GB, free: 116.5 MB / 0.6359 GB
Notification: Performance of matching and sorting (n=3351): time 1.319/8.706, allocations: 230.7 MB / 2.879 GB, free: 109.4 MB / 0.6359 GB
Notification: Performance of inlineWhenForInitialization (initialization): time 0.0002186/8.706, allocations: 450.4 kB / 2.879 GB, free: 109.3 MB / 0.6359 GB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.03384/8.74, allocations: 25.97 MB / 2.905 GB, free: 104.2 MB / 0.6359 GB
Notification: Performance of collectPreVariables (initialization): time 0.01246/8.753, allocations: 0.5655 MB / 2.905 GB, free: 104.2 MB / 0.6359 GB
Notification: Performance of collectInitialEqns (initialization): time 0.01406/8.767, allocations: 23.25 MB / 2.928 GB, free: 96.55 MB / 0.6359 GB
Notification: Performance of collectInitialBindings (initialization): time 0.02125/8.788, allocations: 12.84 MB / 2.94 GB, free: 87.2 MB / 0.6359 GB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.03485/8.823, allocations: 10.31 MB / 2.95 GB, free: 79.27 MB / 0.6359 GB
Notification: Performance of setup shared object (initialization): time 3.925e-05/8.823, allocations: 476.8 kB / 2.951 GB, free: 78.8 MB / 0.6359 GB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.02896/8.852, allocations: 11.66 MB / 2.962 GB, free: 67.13 MB / 0.6359 GB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.03907/8.891, allocations: 32.16 MB / 2.994 GB, free: 26.89 MB / 0.6359 GB
Notification: Performance of analyzeInitialSystem (initialization): time 0.347/9.238, allocations: 48.27 MB / 3.041 GB, free: 89.68 MB / 0.6359 GB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 0.0006102/9.238, allocations: 123.3 kB / 3.041 GB, free: 89.68 MB / 0.6359 GB
Notification: Performance of matching and sorting (n=5583) (initialization): time 0.6326/9.871, allocations: 135.2 MB / 3.173 GB, free: 32.84 MB / 0.6359 GB
Notification: Performance of prepare postOptimizeDAE: time 0.0004416/9.871, allocations: 188 kB / 3.173 GB, free: 32.66 MB / 0.6359 GB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 0.0006175/9.872, allocations: 438.7 kB / 3.174 GB, free: 32.23 MB / 0.6359 GB
Notification: Performance of postOpt tearingSystem (initialization): time 0.6024/10.47, allocations: 158.8 MB / 3.329 GB, free: 126.1 MB / 0.6828 GB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.03945/10.51, allocations: 11.06 MB / 3.339 GB, free: 125.8 MB / 0.6828 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 0.2589/10.77, allocations: 88 MB / 3.425 GB, free: 66.49 MB / 0.6828 GB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.04183/10.81, allocations: 2.482 MB / 3.428 GB, free: 64.01 MB / 0.6828 GB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.01428/10.83, allocations: 2.732 MB / 3.43 GB, free: 61.27 MB / 0.6828 GB
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 1983
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (5439):
 * Single equations (assignments): 5430
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 9
 * Mixed (continuous/discrete) equation systems: 0
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 6 systems
   {(1,3,100.0%), (33,10,82.4%), (1,3,100.0%), (33,10,82.4%), (1,3,100.0%), (33,10,82.4%)}
 * Non-linear torn systems (#iteration vars, #inner vars): 3 systems
   {(1,3), (1,3), (1,3)}
Notification: Performance of prepare postOptimizeDAE: time 0.02982/10.86, allocations: 2.893 MB / 3.433 GB, free: 59.32 MB / 0.6828 GB
Notification: Performance of postOpt lateInlineFunction (simulation): time 0.01883/10.88, allocations: 4.168 MB / 3.437 GB, free: 56.89 MB / 0.6828 GB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.6907/11.57, allocations: 91.03 MB / 3.526 GB, free: 115.2 MB / 0.6828 GB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 0.000445/11.57, allocations: 358.7 kB / 3.527 GB, free: 115.2 MB / 0.6828 GB
Notification: Performance of postOpt constantLinearSystem (simulation): time 0.0006083/11.57, allocations: 55.09 kB / 3.527 GB, free: 115.2 MB / 0.6828 GB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 0.001179/11.57, allocations: 179.8 kB / 3.527 GB, free: 115.2 MB / 0.6828 GB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.4822/12.05, allocations: 147.1 MB / 3.67 GB, free: 60.2 MB / 0.6828 GB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 0.0002677/12.05, allocations: 9 kB / 3.671 GB, free: 60.19 MB / 0.6828 GB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.02884/12.08, allocations: 7.212 MB / 3.678 GB, free: 53.31 MB / 0.6828 GB
Notification: Performance of postOpt tearingSystem (simulation): time 0.4503/12.53, allocations: 53.06 MB / 3.729 GB, free: 104.5 MB / 0.6828 GB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 0.01073/12.54, allocations: 1.394 MB / 3.731 GB, free: 104.5 MB / 0.6828 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 0.1395/12.68, allocations: 49.3 MB / 3.779 GB, free: 87.66 MB / 0.6828 GB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 7.775e-06/12.68, allocations: 16.47 kB / 3.779 GB, free: 87.66 MB / 0.6828 GB
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.4406/13.12, allocations: 104.4 MB / 3.881 GB, free: 81.55 MB / 0.6828 GB
Notification: Performance of postOpt removeConstants (simulation): time 0.03061/13.15, allocations: 9.738 MB / 3.89 GB, free: 77.38 MB / 0.6828 GB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.01646/13.17, allocations: 0.8965 MB / 3.891 GB, free: 77.07 MB / 0.6828 GB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.03479/13.2, allocations: 1.564 MB / 3.893 GB, free: 75.98 MB / 0.6828 GB
Notification: Performance of postOpt findZeroCrossings (simulation): time 0.01775/13.22, allocations: 5.125 MB / 3.898 GB, free: 70.9 MB / 0.6828 GB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 0.009063/13.23, allocations: 1.343 MB / 3.899 GB, free: 69.55 MB / 0.6828 GB
Notification: Performance of sorting global known variables: time 0.02418/13.26, allocations: 14.78 MB / 3.913 GB, free: 54.91 MB / 0.6828 GB
Notification: Performance of sort global known variables: time 1.7e-07/13.26, allocations: 4 kB / 3.913 GB, free: 54.91 MB / 0.6828 GB
Notification: Performance of remove unused functions: time 0.06444/13.32, allocations: 15.4 MB / 3.929 GB, free: 39.87 MB / 0.6828 GB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 45
 * Number of states: 180 (pCO2_2000.solution.temperature,pCO2_2000.O2_free.logn,pCO2_2000.H2O.logn,pCO2_2000.relaxed.OxyHm[1].logn,pCO2_2000.relaxed.OxyHm[2].logn,pCO2_2000.relaxed.OxyHm[3].logn,pCO2_2000.relaxed.OxyHm[4].logn,pCO2_2000.relaxed.DeoxyHm[1].logn,pCO2_2000.relaxed.DeoxyHm[2].logn,pCO2_2000.relaxed.DeoxyHm[3].logn,pCO2_2000.relaxed.DeoxyHm[4].logn,pCO2_2000.relaxed.HmAH[1].logn,pCO2_2000.relaxed.HmAH[2].logn,pCO2_2000.relaxed.HmAH[3].logn,pCO2_2000.relaxed.HmAH[4].logn,pCO2_2000.relaxed.HmA[1].logn,pCO2_2000.relaxed.HmA[2].logn,pCO2_2000.relaxed.HmA[3].logn,pCO2_2000.relaxed.HmA[4].logn,pCO2_2000.relaxed.HmNH3[1].logn,pCO2_2000.relaxed.HmNH3[2].logn,pCO2_2000.relaxed.HmNH3[3].logn,pCO2_2000.relaxed.HmNH3[4].logn,pCO2_2000.relaxed.HmNH2[1].logn,pCO2_2000.relaxed.HmNH2[2].logn,pCO2_2000.relaxed.HmNH2[3].logn,pCO2_2000.relaxed.HmNH2[4].logn,pCO2_2000.relaxed.HmNHCOO[1].logn,pCO2_2000.relaxed.HmNHCOO[2].logn,pCO2_2000.relaxed.HmNHCOO[3].logn,pCO2_2000.relaxed.HmNHCOO[4].logn,pCO2_2000.tensed.OxyHm[1].logn,pCO2_2000.tensed.OxyHm[2].logn,pCO2_2000.tensed.OxyHm[3].logn,pCO2_2000.tensed.OxyHm[4].logn,pCO2_2000.tensed.DeoxyHm[1].logn,pCO2_2000.tensed.DeoxyHm[2].logn,pCO2_2000.tensed.DeoxyHm[3].logn,pCO2_2000.tensed.DeoxyHm[4].logn,pCO2_2000.tensed.HmAH[1].logn,pCO2_2000.tensed.HmAH[2].logn,pCO2_2000.tensed.HmAH[3].logn,pCO2_2000.tensed.HmAH[4].logn,pCO2_2000.tensed.HmA[1].logn,pCO2_2000.tensed.HmA[2].logn,pCO2_2000.tensed.HmA[3].logn,pCO2_2000.tensed.HmA[4].logn,pCO2_2000.tensed.HmNH3[1].logn,pCO2_2000.tensed.HmNH3[2].logn,pCO2_2000.tensed.HmNH3[3].logn,pCO2_2000.tensed.HmNH3[4].logn,pCO2_2000.tensed.HmNH2[1].logn,pCO2_2000.tensed.HmNH2[2].logn,pCO2_2000.tensed.HmNH2[3].logn,pCO2_2000.tensed.HmNH2[4].logn,pCO2_2000.tensed.HmNHCOO[1].logn,pCO2_2000.tensed.HmNHCOO[2].logn,pCO2_2000.tensed.HmNHCOO[3].logn,pCO2_2000.tensed.HmNHCOO[4].logn,pCO2_2000.CO2_free.logn,pCO2_5330.solution.temperature,pCO2_5330.O2_free.logn,pCO2_5330.H2O.logn,pCO2_5330.relaxed.OxyHm[1].logn,pCO2_5330.relaxed.OxyHm[2].logn,pCO2_5330.relaxed.OxyHm[3].logn,pCO2_5330.relaxed.OxyHm[4].logn,pCO2_5330.relaxed.DeoxyHm[1].logn,pCO2_5330.relaxed.DeoxyHm[2].logn,pCO2_5330.relaxed.DeoxyHm[3].logn,pCO2_5330.relaxed.DeoxyHm[4].logn,pCO2_5330.relaxed.HmAH[1].logn,pCO2_5330.relaxed.HmAH[2].logn,pCO2_5330.relaxed.HmAH[3].logn,pCO2_5330.relaxed.HmAH[4].logn,pCO2_5330.relaxed.HmA[1].logn,pCO2_5330.relaxed.HmA[2].logn,pCO2_5330.relaxed.HmA[3].logn,pCO2_5330.relaxed.HmA[4].logn,pCO2_5330.relaxed.HmNH3[1].logn,pCO2_5330.relaxed.HmNH3[2].logn,pCO2_5330.relaxed.HmNH3[3].logn,pCO2_5330.relaxed.HmNH3[4].logn,pCO2_5330.relaxed.HmNH2[1].logn,pCO2_5330.relaxed.HmNH2[2].logn,pCO2_5330.relaxed.HmNH2[3].logn,pCO2_5330.relaxed.HmNH2[4].logn,pCO2_5330.relaxed.HmNHCOO[1].logn,pCO2_5330.relaxed.HmNHCOO[2].logn,pCO2_5330.relaxed.HmNHCOO[3].logn,pCO2_5330.relaxed.HmNHCOO[4].logn,pCO2_5330.tensed.OxyHm[1].logn,pCO2_5330.tensed.OxyHm[2].logn,pCO2_5330.tensed.OxyHm[3].logn,pCO2_5330.tensed.OxyHm[4].logn,pCO2_5330.tensed.DeoxyHm[1].logn,pCO2_5330.tensed.DeoxyHm[2].logn,pCO2_5330.tensed.DeoxyHm[3].logn,pCO2_5330.tensed.DeoxyHm[4].logn,pCO2_5330.tensed.HmAH[1].logn,pCO2_5330.tensed.HmAH[2].logn,pCO2_5330.tensed.HmAH[3].logn,pCO2_5330.tensed.HmAH[4].logn,pCO2_5330.tensed.HmA[1].logn,pCO2_5330.tensed.HmA[2].logn,pCO2_5330.tensed.HmA[3].logn,pCO2_5330.tensed.HmA[4].logn,pCO2_5330.tensed.HmNH3[1].logn,pCO2_5330.tensed.HmNH3[2].logn,pCO2_5330.tensed.HmNH3[3].logn,pCO2_5330.tensed.HmNH3[4].logn,pCO2_5330.tensed.HmNH2[1].logn,pCO2_5330.tensed.HmNH2[2].logn,pCO2_5330.tensed.HmNH2[3].logn,pCO2_5330.tensed.HmNH2[4].logn,pCO2_5330.tensed.HmNHCOO[1].logn,pCO2_5330.tensed.HmNHCOO[2].logn,pCO2_5330.tensed.HmNHCOO[3].logn,pCO2_5330.tensed.HmNHCOO[4].logn,pCO2_5330.CO2_free.logn,pCO2_9330.solution.temperature,pCO2_9330.O2_free.logn,pCO2_9330.H2O.logn,pCO2_9330.relaxed.OxyHm[1].logn,pCO2_9330.relaxed.OxyHm[2].logn,pCO2_9330.relaxed.OxyHm[3].logn,pCO2_9330.relaxed.OxyHm[4].logn,pCO2_9330.relaxed.DeoxyHm[1].logn,pCO2_9330.relaxed.DeoxyHm[2].logn,pCO2_9330.relaxed.DeoxyHm[3].logn,pCO2_9330.relaxed.DeoxyHm[4].logn,pCO2_9330.relaxed.HmAH[1].logn,pCO2_9330.relaxed.HmAH[2].logn,pCO2_9330.relaxed.HmAH[3].logn,pCO2_9330.relaxed.HmAH[4].logn,pCO2_9330.relaxed.HmA[1].logn,pCO2_9330.relaxed.HmA[2].logn,pCO2_9330.relaxed.HmA[3].logn,pCO2_9330.relaxed.HmA[4].logn,pCO2_9330.relaxed.HmNH3[1].logn,pCO2_9330.relaxed.HmNH3[2].logn,pCO2_9330.relaxed.HmNH3[3].logn,pCO2_9330.relaxed.HmNH3[4].logn,pCO2_9330.relaxed.HmNH2[1].logn,pCO2_9330.relaxed.HmNH2[2].logn,pCO2_9330.relaxed.HmNH2[3].logn,pCO2_9330.relaxed.HmNH2[4].logn,pCO2_9330.relaxed.HmNHCOO[1].logn,pCO2_9330.relaxed.HmNHCOO[2].logn,pCO2_9330.relaxed.HmNHCOO[3].logn,pCO2_9330.relaxed.HmNHCOO[4].logn,pCO2_9330.tensed.OxyHm[1].logn,pCO2_9330.tensed.OxyHm[2].logn,pCO2_9330.tensed.OxyHm[3].logn,pCO2_9330.tensed.OxyHm[4].logn,pCO2_9330.tensed.DeoxyHm[1].logn,pCO2_9330.tensed.DeoxyHm[2].logn,pCO2_9330.tensed.DeoxyHm[3].logn,pCO2_9330.tensed.DeoxyHm[4].logn,pCO2_9330.tensed.HmAH[1].logn,pCO2_9330.tensed.HmAH[2].logn,pCO2_9330.tensed.HmAH[3].logn,pCO2_9330.tensed.HmAH[4].logn,pCO2_9330.tensed.HmA[1].logn,pCO2_9330.tensed.HmA[2].logn,pCO2_9330.tensed.HmA[3].logn,pCO2_9330.tensed.HmA[4].logn,pCO2_9330.tensed.HmNH3[1].logn,pCO2_9330.tensed.HmNH3[2].logn,pCO2_9330.tensed.HmNH3[3].logn,pCO2_9330.tensed.HmNH3[4].logn,pCO2_9330.tensed.HmNH2[1].logn,pCO2_9330.tensed.HmNH2[2].logn,pCO2_9330.tensed.HmNH2[3].logn,pCO2_9330.tensed.HmNH2[4].logn,pCO2_9330.tensed.HmNHCOO[1].logn,pCO2_9330.tensed.HmNHCOO[2].logn,pCO2_9330.tensed.HmNHCOO[3].logn,pCO2_9330.tensed.HmNHCOO[4].logn,pCO2_9330.CO2_free.logn)
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (3666):
 * Single equations (assignments): 3657
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 9
 * Mixed (continuous/discrete) equation systems: 0
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 6 systems
   {(1,3,100.0%), (33,10,82.4%), (1,3,100.0%), (33,10,82.4%), (1,3,100.0%), (33,10,82.4%)}
 * Non-linear torn systems (#iteration vars, #inner vars): 3 systems
   {(1,3), (1,3), (1,3)}
Notification: Performance of Backend phase and start with SimCode phase: time 0.01223/13.33, allocations: 3.405 MB / 3.932 GB, free: 37.48 MB / 0.6828 GB
Notification: Performance of simCode: created initialization part: time 0.4648/13.8, allocations: 42.06 MB / 3.973 GB, free: 134.6 MB / 0.6828 GB
Notification: Performance of simCode: created event and clocks part: time 1.552e-05/13.8, allocations: 4.594 kB / 3.973 GB, free: 134.6 MB / 0.6828 GB
Notification: Performance of simCode: created simulation system equations: time 0.07174/13.87, allocations: 22.86 MB / 3.995 GB, free: 132.4 MB / 0.6828 GB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.05049/13.92, allocations: 8.19 MB / 4.003 GB, free: 131.7 MB / 0.6828 GB
Error: Error parsing unit kDa: Unit not found
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.2327/14.15, allocations: 92.49 MB / 4.094 GB, free: 103.7 MB / 0.6828 GB
Notification: Performance of simCode: some other stuff during SimCode phase: time 0.04487/14.2, allocations: 13.91 MB / 4.107 GB, free: 102.4 MB / 0.6828 GB
Notification: Performance of simCode: alias equations: time 0.05303/14.25, allocations: 12.04 MB / 4.119 GB, free: 97.24 MB / 0.6828 GB
Notification: Performance of simCode: all other stuff during SimCode phase: time 0.02436/14.27, allocations: 3.6 MB / 4.122 GB, free: 94.45 MB / 0.6828 GB
Notification: Performance of SimCode: time 2.505e-06/14.27, allocations: 0 / 4.122 GB, free: 94.45 MB / 0.6828 GB
Notification: Performance of Templates: time 2.114/16.39, allocations: 0.9452 GB / 5.068 GB, free: 119.2 MB / 0.714 GB
"
[Timeout remaining time 644]
make -j1 -f Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57.makefile [Timeout 660]
(rm -f Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57.pipe ; mkfifo Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57.pipe ; head -c 1048576 < Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57.pipe >> ../files/Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57.sim & ./Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57 -abortSlowSimulation -alarm=240  -lv LOG_STATS > Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 40.1467557316646]