Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllostery.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001604/0.001604, allocations: 93.06 kB / 19.65 MB, free: 276 kB / 13.93 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001679/0.001679, allocations: 169 kB / 23.02 MB, free: 1.547 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9719/0.9719, allocations: 177.1 MB / 203.4 MB, free: 5.633 MB / 186.7 MB " [Timeout remaining time 179] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo): time 0.09816/0.09816, allocations: 17.46 MB / 277.4 MB, free: 11.55 MB / 266.7 MB " [Timeout remaining time 180] Using package Chemical with version 2.0.1 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: translateModel(Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllostery,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllostery") translateModel(Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllostery,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllostery") [Timeout 660] "Notification: Performance of FrontEnd - loaded program: time 1.292e-06/1.292e-06, allocations: 3.938 kB / 353.6 MB, free: 9.805 MB / 282.7 MB Notification: Performance of FrontEnd - Absyn->SCode: time 1.682e-05/1.811e-05, allocations: 2.312 kB / 353.6 MB, free: 9.801 MB / 282.7 MB [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Obsolete.mo:14335:7-14335:66:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Obsolete.mo:14335:7-14335:66:writable] Notification: The diagnostics message for the missing inner is: Your model is using an outer \"system\" component but an inner \"system\" component is not defined. For simulation drag Modelica.Fluid.System into your model to specify system properties. Notification: Performance of NFInst.instantiate(Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllostery): time 0.04038/0.0404, allocations: 44.01 MB / 397.6 MB, free: 13.87 MB / 330.7 MB Notification: Performance of NFInst.instExpressions: time 0.1753/0.2157, allocations: 26.26 MB / 423.9 MB, free: 33.59 MB / 330.7 MB Notification: Performance of NFInst.updateImplicitVariability: time 0.003049/0.2187, allocations: 78.66 kB / 423.9 MB, free: 33.59 MB / 330.7 MB Notification: Performance of NFTyping.typeComponents: time 0.001574/0.2203, allocations: 0.9557 MB / 424.9 MB, free: 33.56 MB / 330.7 MB Notification: Performance of NFTyping.typeBindings: time 0.005628/0.2259, allocations: 3.318 MB / 428.2 MB, free: 32.32 MB / 330.7 MB Notification: Performance of NFTyping.typeClassSections: time 0.00861/0.2345, allocations: 4.995 MB / 433.2 MB, free: 29.63 MB / 330.7 MB Notification: Performance of NFFlatten.flatten: time 0.01478/0.2493, allocations: 27.41 MB / 460.6 MB, free: 10.16 MB / 330.7 MB Notification: Performance of NFFlatten.resolveConnections: time 0.01617/0.2655, allocations: 17.1 MB / 477.7 MB, free: 9.988 MB / 346.7 MB Notification: Performance of NFEvalConstants.evaluate: time 0.03028/0.2958, allocations: 23.01 MB / 0.489 GB, free: 3.52 MB / 362.7 MB Notification: Performance of NFSimplifyModel.simplify: time 0.02768/0.3234, allocations: 16.6 MB / 0.5052 GB, free: 3.723 MB / 378.7 MB Notification: Performance of NFPackage.collectConstants: time 0.01069/0.3341, allocations: 3.132 MB / 0.5083 GB, free: 0.5938 MB / 378.7 MB Notification: Performance of NFFlatten.collectFunctions: time 0.02098/0.3551, allocations: 5.225 MB / 0.5134 GB, free: 11.41 MB / 394.7 MB Notification: Performance of NFScalarize.scalarize: time 0.0124/0.3675, allocations: 7.157 MB / 0.5203 GB, free: 4.738 MB / 394.7 MB Notification: Performance of NFVerifyModel.verify: time 0.02019/0.3877, allocations: 9.412 MB / 0.5295 GB, free: 11.82 MB / 410.7 MB Notification: Performance of NFConvertDAE.convert: time 0.03674/0.4244, allocations: 27.24 MB / 0.5561 GB, free: 1.664 MB / 426.7 MB Notification: Performance of FrontEnd - DAE generated: time 6.252e-06/0.4244, allocations: 0 / 0.5561 GB, free: 1.664 MB / 426.7 MB Notification: Performance of FrontEnd: time 1.944e-06/0.4244, allocations: 2.656 kB / 0.5561 GB, free: 1.664 MB / 426.7 MB Notification: Performance of Transformations before backend: time 0.001013/0.4255, allocations: 0 / 0.5561 GB, free: 1.664 MB / 426.7 MB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 3808 * Number of variables: 3808 Notification: Performance of Generate backend data structure: time 0.319/0.7444, allocations: 23.36 MB / 0.579 GB, free: 101.6 MB / 426.8 MB Notification: Performance of prepare preOptimizeDAE: time 4.899e-05/0.7445, allocations: 11.12 kB / 0.579 GB, free: 101.6 MB / 426.8 MB Notification: Performance of preOpt normalInlineFunction (simulation): time 0.01449/0.759, allocations: 6.556 MB / 0.5854 GB, free: 99.13 MB / 426.8 MB Notification: Performance of preOpt evaluateParameters (simulation): time 0.01372/0.7727, allocations: 11.01 MB / 0.5961 GB, free: 90.78 MB / 426.8 MB Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.0008562/0.7736, allocations: 3.06 MB / 0.5991 GB, free: 87.28 MB / 426.8 MB Notification: Performance of preOpt expandDerOperator (simulation): time 0.002472/0.776, allocations: 1.519 MB / 0.6006 GB, free: 85.76 MB / 426.8 MB Notification: Performance of preOpt clockPartitioning (simulation): time 0.02398/0.8, allocations: 19.37 MB / 0.6195 GB, free: 66.1 MB / 426.8 MB Notification: Performance of preOpt findStateOrder (simulation): time 0.0001814/0.8002, allocations: 10.56 kB / 0.6195 GB, free: 66.09 MB / 426.8 MB Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.001537/0.8017, allocations: 0.5928 MB / 0.6201 GB, free: 65.5 MB / 426.8 MB Notification: Performance of preOpt inlineArrayEqn (simulation): time 0.0001254/0.8019, allocations: 363.9 kB / 0.6205 GB, free: 65.15 MB / 426.8 MB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.02545/0.8273, allocations: 20.5 MB / 0.6405 GB, free: 44.68 MB / 426.8 MB Warning: The model contains alias variables with redundant start and/or conflicting nominal values. It is recommended to resolve the conflicts, because otherwise the system could be hard to solve. To print the conflicting alias sets and the chosen candidates please use -d=aliasConflicts. Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.13/0.9574, allocations: 86.11 MB / 0.7246 GB, free: 7.293 MB / 474.8 MB Notification: Performance of preOpt comSubExp (simulation): time 0.9039/1.861, allocations: 330.1 MB / 1.047 GB, free: 52.12 MB / 490.9 MB Notification: Performance of preOpt resolveLoops (simulation): time 0.01555/1.877, allocations: 7.756 MB / 1.054 GB, free: 44.33 MB / 490.9 MB Notification: Performance of preOpt evalFunc (simulation): time 0.0609/1.938, allocations: 48.04 MB / 1.101 GB, free: 13.93 MB / 0.495 GB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.0001012/1.938, allocations: 137.1 kB / 1.102 GB, free: 13.79 MB / 0.495 GB Notification: Performance of preOpt simplifyInStream (simulation): time 0.2021/2.14, allocations: 6.009 MB / 1.107 GB, free: 162.4 MB / 0.495 GB Notification: Performance of pre-optimization done (n=983): time 5.779e-05/2.14, allocations: 1.656 kB / 1.107 GB, free: 162.4 MB / 0.495 GB Notification: Performance of matching and sorting (n=1117): time 0.3055/2.445, allocations: 72.96 MB / 1.179 GB, free: 126.9 MB / 0.495 GB Notification: Performance of inlineWhenForInitialization (initialization): time 7.724e-05/2.445, allocations: 168.2 kB / 1.179 GB, free: 126.7 MB / 0.495 GB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.008339/2.454, allocations: 8.782 MB / 1.187 GB, free: 118.1 MB / 0.495 GB Notification: Performance of collectPreVariables (initialization): time 0.003143/2.457, allocations: 209.7 kB / 1.188 GB, free: 117.9 MB / 0.495 GB Notification: Performance of collectInitialEqns (initialization): time 0.003429/2.46, allocations: 7.649 MB / 1.195 GB, free: 111.1 MB / 0.495 GB Notification: Performance of collectInitialBindings (initialization): time 0.004904/2.465, allocations: 4.261 MB / 1.199 GB, free: 107.4 MB / 0.495 GB Notification: Performance of simplifyInitialFunctions (initialization): time 0.004017/2.469, allocations: 3.412 MB / 1.203 GB, free: 104 MB / 0.495 GB Notification: Performance of setup shared object (initialization): time 5.213e-05/2.469, allocations: 487 kB / 1.203 GB, free: 103.5 MB / 0.495 GB Notification: Performance of preBalanceInitialSystem (initialization): time 0.00587/2.475, allocations: 3.889 MB / 1.207 GB, free: 99.61 MB / 0.495 GB Notification: Performance of partitionIndependentBlocks (initialization): time 0.007256/2.482, allocations: 10.72 MB / 1.217 GB, free: 86.18 MB / 0.495 GB Notification: Performance of analyzeInitialSystem (initialization): time 0.01499/2.497, allocations: 16.09 MB / 1.233 GB, free: 67.84 MB / 0.495 GB Notification: Performance of solveInitialSystemEqSystem (initialization): time 7.771e-05/2.498, allocations: 47.98 kB / 1.233 GB, free: 67.8 MB / 0.495 GB Notification: Performance of matching and sorting (n=1861) (initialization): time 0.1857/2.683, allocations: 45.08 MB / 1.277 GB, free: 23.61 MB / 0.495 GB Notification: Performance of prepare postOptimizeDAE: time 0.0001089/2.683, allocations: 68 kB / 1.277 GB, free: 23.54 MB / 0.495 GB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 0.0001922/2.684, allocations: 144 kB / 1.277 GB, free: 23.4 MB / 0.495 GB Notification: Performance of postOpt tearingSystem (initialization): time 0.2932/2.977, allocations: 47.51 MB / 1.324 GB, free: 125.4 MB / 0.495 GB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.01266/2.989, allocations: 3.692 MB / 1.327 GB, free: 125.3 MB / 0.495 GB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 0.09825/3.088, allocations: 28.16 MB / 1.355 GB, free: 113.1 MB / 0.495 GB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.01192/3.1, allocations: 0.8215 MB / 1.356 GB, free: 112.7 MB / 0.495 GB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.003092/3.103, allocations: 0.915 MB / 1.356 GB, free: 112.4 MB / 0.495 GB Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 661 * Number of states: 0 () * Number of discrete variables: 0 () * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (1813): * Single equations (assignments): 1810 * Array equations: 0 * Algorithm blocks: 0 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 3 * Mixed (continuous/discrete) equation systems: 0 Notification: Torn system details for strict tearing set: * Linear torn systems (#iteration vars, #inner vars, density): 2 systems {(1,3,100.0%), (33,10,82.4%)} * Non-linear torn systems (#iteration vars, #inner vars): 1 system {(1,3)} Notification: Performance of prepare postOptimizeDAE: time 0.005481/3.108, allocations: 1.073 MB / 1.357 GB, free: 111.8 MB / 0.495 GB Notification: Performance of postOpt lateInlineFunction (simulation): time 0.002993/3.111, allocations: 1.396 MB / 1.359 GB, free: 111.7 MB / 0.495 GB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.1109/3.222, allocations: 30.36 MB / 1.388 GB, free: 85.86 MB / 0.495 GB Notification: Performance of postOpt inlineArrayEqn (simulation): time 9.197e-05/3.222, allocations: 117.4 kB / 1.389 GB, free: 85.75 MB / 0.495 GB Notification: Performance of postOpt constantLinearSystem (simulation): time 5.45e-05/3.222, allocations: 22 kB / 1.389 GB, free: 85.73 MB / 0.495 GB Notification: Performance of postOpt simplifysemiLinear (simulation): time 0.0002826/3.222, allocations: 59.77 kB / 1.389 GB, free: 85.67 MB / 0.495 GB Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.156/3.378, allocations: 46.81 MB / 1.434 GB, free: 39.3 MB / 0.495 GB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 8.555e-05/3.379, allocations: 5.312 kB / 1.434 GB, free: 39.3 MB / 0.495 GB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.00857/3.387, allocations: 2.417 MB / 1.437 GB, free: 36.99 MB / 0.495 GB Notification: Performance of postOpt tearingSystem (simulation): time 0.04821/3.435, allocations: 15.86 MB / 1.452 GB, free: 21.29 MB / 0.495 GB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 0.004054/3.439, allocations: 455.5 kB / 1.453 GB, free: 20.84 MB / 0.495 GB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 0.05715/3.496, allocations: 15.64 MB / 1.468 GB, free: 5.012 MB / 0.495 GB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 4.108e-06/3.496, allocations: 6.625 kB / 1.468 GB, free: 5.008 MB / 0.495 GB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.3398/3.836, allocations: 34.55 MB / 1.502 GB, free: 121.5 MB / 0.495 GB Notification: Performance of postOpt removeConstants (simulation): time 0.01511/3.851, allocations: 2.85 MB / 1.504 GB, free: 121.5 MB / 0.495 GB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.01744/3.869, allocations: 290.9 kB / 1.505 GB, free: 121.5 MB / 0.495 GB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.02044/3.889, allocations: 0.5196 MB / 1.505 GB, free: 121.5 MB / 0.495 GB Notification: Performance of postOpt findZeroCrossings (simulation): time 0.00641/3.896, allocations: 1.664 MB / 1.507 GB, free: 121.5 MB / 0.495 GB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 0.002704/3.898, allocations: 463.1 kB / 1.507 GB, free: 121.5 MB / 0.495 GB Notification: Performance of sorting global known variables: time 0.007404/3.906, allocations: 4.252 MB / 1.511 GB, free: 121.2 MB / 0.495 GB Notification: Performance of sort global known variables: time 2.71e-07/3.906, allocations: 1.969 kB / 1.511 GB, free: 121.2 MB / 0.495 GB Notification: Performance of remove unused functions: time 0.0213/3.927, allocations: 5.232 MB / 1.517 GB, free: 121.2 MB / 0.495 GB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 15 * Number of states: 60 (solution.temperature,O2_free.logn,H2O.logn,relaxed.OxyHm[1].logn,relaxed.OxyHm[2].logn,relaxed.OxyHm[3].logn,relaxed.OxyHm[4].logn,relaxed.DeoxyHm[1].logn,relaxed.DeoxyHm[2].logn,relaxed.DeoxyHm[3].logn,relaxed.DeoxyHm[4].logn,relaxed.HmAH[1].logn,relaxed.HmAH[2].logn,relaxed.HmAH[3].logn,relaxed.HmAH[4].logn,relaxed.HmA[1].logn,relaxed.HmA[2].logn,relaxed.HmA[3].logn,relaxed.HmA[4].logn,relaxed.HmNH3[1].logn,relaxed.HmNH3[2].logn,relaxed.HmNH3[3].logn,relaxed.HmNH3[4].logn,relaxed.HmNH2[1].logn,relaxed.HmNH2[2].logn,relaxed.HmNH2[3].logn,relaxed.HmNH2[4].logn,relaxed.HmNHCOO[1].logn,relaxed.HmNHCOO[2].logn,relaxed.HmNHCOO[3].logn,relaxed.HmNHCOO[4].logn,tensed.OxyHm[1].logn,tensed.OxyHm[2].logn,tensed.OxyHm[3].logn,tensed.OxyHm[4].logn,tensed.DeoxyHm[1].logn,tensed.DeoxyHm[2].logn,tensed.DeoxyHm[3].logn,tensed.DeoxyHm[4].logn,tensed.HmAH[1].logn,tensed.HmAH[2].logn,tensed.HmAH[3].logn,tensed.HmAH[4].logn,tensed.HmA[1].logn,tensed.HmA[2].logn,tensed.HmA[3].logn,tensed.HmA[4].logn,tensed.HmNH3[1].logn,tensed.HmNH3[2].logn,tensed.HmNH3[3].logn,tensed.HmNH3[4].logn,tensed.HmNH2[1].logn,tensed.HmNH2[2].logn,tensed.HmNH2[3].logn,tensed.HmNH2[4].logn,tensed.HmNHCOO[1].logn,tensed.HmNHCOO[2].logn,tensed.HmNHCOO[3].logn,tensed.HmNHCOO[4].logn,CO2_free.logn) * Number of discrete variables: 0 () * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (1222): * Single equations (assignments): 1219 * Array equations: 0 * Algorithm blocks: 0 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 3 * Mixed (continuous/discrete) equation systems: 0 Notification: Torn system details for strict tearing set: * Linear torn systems (#iteration vars, #inner vars, density): 2 systems {(1,3,100.0%), (33,10,82.4%)} * Non-linear torn systems (#iteration vars, #inner vars): 1 system {(1,3)} Notification: Performance of Backend phase and start with SimCode phase: time 0.004462/3.932, allocations: 1.374 MB / 1.518 GB, free: 121.1 MB / 0.495 GB Notification: Performance of simCode: created initialization part: time 0.0366/3.968, allocations: 14 MB / 1.532 GB, free: 115.9 MB / 0.495 GB Notification: Performance of simCode: created event and clocks part: time 1.207e-05/3.968, allocations: 4 kB / 1.532 GB, free: 115.9 MB / 0.495 GB Notification: Performance of simCode: created simulation system equations: time 0.0214/3.99, allocations: 7.585 MB / 1.539 GB, free: 110.5 MB / 0.495 GB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0129/4.002, allocations: 2.642 MB / 1.542 GB, free: 109.3 MB / 0.495 GB Error: Error parsing unit kDa: Unit not found Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.05659/4.059, allocations: 29.46 MB / 1.57 GB, free: 82.9 MB / 0.495 GB Notification: Performance of simCode: some other stuff during SimCode phase: time 0.005174/4.064, allocations: 4.37 MB / 1.575 GB, free: 78.49 MB / 0.495 GB Notification: Performance of simCode: alias equations: time 0.01034/4.075, allocations: 4.039 MB / 1.579 GB, free: 74.76 MB / 0.495 GB Notification: Performance of simCode: all other stuff during SimCode phase: time 0.004781/4.079, allocations: 1.211 MB / 1.58 GB, free: 73.55 MB / 0.495 GB Notification: Performance of SimCode: time 2.755e-06/4.079, allocations: 0 / 1.58 GB, free: 73.55 MB / 0.495 GB Notification: Performance of Templates: time 0.6655/4.745, allocations: 305 MB / 1.878 GB, free: 139.6 MB / 0.5107 GB " [Timeout remaining time 655] make -j1 -f Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllostery.makefile [Timeout 660] (rm -f Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllostery.pipe ; mkfifo Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllostery.pipe ; head -c 1048576 < Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllostery.pipe >> ../files/Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllostery.sim & ./Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllostery -abortSlowSimulation -alarm=240 -lv LOG_STATS > Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllostery.pipe 2>&1) [Timeout 240] [Calling sys.exit(0), Time elapsed: 14.44246190506965]