Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_master_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.0009443/0.0009443, allocations: 92.22 kB / 19.65 MB, free: 276 kB / 13.93 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001005/0.001005, allocations: 173 kB / 23.03 MB, free: 1.543 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9598/0.9598, allocations: 177.1 MB / 203.4 MB, free: 5.633 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo): time 0.08993/0.08993, allocations: 17.46 MB / 277.4 MB, free: 11.55 MB / 266.7 MB
"
[Timeout remaining time 180]
Using package Chemical with version 2.0.1 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG")
translateModel(Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.723e-06/1.723e-06, allocations: 0 / 353.6 MB, free: 9.836 MB / 282.7 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 2.122e-05/2.294e-05, allocations: 6.25 kB / 353.6 MB, free: 9.828 MB / 282.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Obsolete.mo:12638:6-12638:65:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Obsolete.mo:12638:6-12638:65:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"system\" component but
an inner \"system\" component is not defined.
For simulation drag Modelica.Fluid.System into your model
to specify system properties.
Notification: Performance of NFInst.instantiate(Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG): time 0.02644/0.02646, allocations: 26.91 MB / 380.5 MB, free: 15.05 MB / 314.7 MB
Notification: Performance of NFInst.instExpressions: time 0.005231/0.03169, allocations: 6.352 MB / 386.8 MB, free: 8.68 MB / 314.7 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.0001883/0.03188, allocations: 15.88 kB / 386.8 MB, free: 8.664 MB / 314.7 MB
Notification: Performance of NFTyping.typeComponents: time 0.0004123/0.03229, allocations: 146.9 kB / 387 MB, free: 8.52 MB / 314.7 MB
Notification: Performance of NFTyping.typeBindings: time 0.0005503/0.03284, allocations: 273.7 kB / 387.2 MB, free: 8.25 MB / 314.7 MB
Notification: Performance of NFTyping.typeClassSections: time 0.001755/0.0346, allocations: 1.001 MB / 388.2 MB, free: 7.242 MB / 314.7 MB
Notification: Performance of NFFlatten.flatten: time 0.0005446/0.03514, allocations: 0.533 MB / 388.8 MB, free: 6.707 MB / 314.7 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.000238/0.03538, allocations: 167.9 kB / 388.9 MB, free: 6.543 MB / 314.7 MB
Notification: Performance of NFEvalConstants.evaluate: time 0.0002647/0.03565, allocations: 331.3 kB / 389.3 MB, free: 6.219 MB / 314.7 MB
Notification: Performance of NFSimplifyModel.simplify: time 0.0003099/0.03596, allocations: 227.5 kB / 389.5 MB, free: 5.996 MB / 314.7 MB
Notification: Performance of NFPackage.collectConstants: time 4.572e-05/0.036, allocations: 28 kB / 389.5 MB, free: 5.969 MB / 314.7 MB
Notification: Performance of NFFlatten.collectFunctions: time 0.001009/0.03701, allocations: 0.5224 MB / 390 MB, free: 5.445 MB / 314.7 MB
Notification: Performance of NFScalarize.scalarize: time 0.0001151/0.03713, allocations: 91.66 kB / 390.1 MB, free: 5.355 MB / 314.7 MB
Notification: Performance of NFVerifyModel.verify: time 0.0001233/0.03725, allocations: 143.6 kB / 390.3 MB, free: 5.215 MB / 314.7 MB
Notification: Performance of NFConvertDAE.convert: time 0.001191/0.03844, allocations: 1.035 MB / 391.3 MB, free: 4.176 MB / 314.7 MB
Notification: Performance of FrontEnd - DAE generated: time 6.042e-06/0.03845, allocations: 0 / 391.3 MB, free: 4.176 MB / 314.7 MB
Notification: Performance of FrontEnd: time 2.004e-06/0.03845, allocations: 4 kB / 391.3 MB, free: 4.172 MB / 314.7 MB
Notification: Performance of Transformations before backend: time 9.527e-06/0.03846, allocations: 0 / 391.3 MB, free: 4.172 MB / 314.7 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 65
 * Number of variables: 65
Notification: Performance of Generate backend data structure: time 0.001012/0.03947, allocations: 0.8374 MB / 392.1 MB, free: 3.293 MB / 314.7 MB
Notification: Performance of prepare preOptimizeDAE: time 4.694e-05/0.03952, allocations: 11.97 kB / 392.2 MB, free: 3.281 MB / 314.7 MB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0004378/0.03996, allocations: 183.7 kB / 392.3 MB, free: 3.102 MB / 314.7 MB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.0003827/0.04034, allocations: 340.3 kB / 392.7 MB, free: 2.742 MB / 314.7 MB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 1.772e-05/0.04036, allocations: 25.03 kB / 392.7 MB, free: 2.719 MB / 314.7 MB
Notification: Performance of preOpt expandDerOperator (simulation): time 3.706e-05/0.04039, allocations: 24.38 kB / 392.7 MB, free: 2.695 MB / 314.7 MB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.000408/0.0408, allocations: 396.3 kB / 393.1 MB, free: 2.262 MB / 314.7 MB
Notification: Performance of preOpt findStateOrder (simulation): time 1.117e-05/0.04081, allocations: 3.938 kB / 393.1 MB, free: 2.258 MB / 314.7 MB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 2.881e-05/0.04084, allocations: 12 kB / 393.1 MB, free: 2.246 MB / 314.7 MB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 1.089e-05/0.04085, allocations: 12 kB / 393.1 MB, free: 2.234 MB / 314.7 MB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0004524/0.0413, allocations: 422.5 kB / 393.5 MB, free: 1.816 MB / 314.7 MB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.001458/0.04276, allocations: 2.016 MB / 395.6 MB, free: 15.72 MB / 330.7 MB
Notification: Performance of preOpt comSubExp (simulation): time 0.000184/0.04295, allocations: 98.95 kB / 395.7 MB, free: 15.61 MB / 330.7 MB
Notification: Performance of preOpt resolveLoops (simulation): time 7.674e-05/0.04302, allocations: 47.67 kB / 395.7 MB, free: 15.56 MB / 330.7 MB
Notification: Performance of preOpt evalFunc (simulation): time 0.001208/0.04423, allocations: 1.003 MB / 396.7 MB, free: 14.54 MB / 330.7 MB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 2.398e-05/0.04425, allocations: 41.39 kB / 396.7 MB, free: 14.48 MB / 330.7 MB
Notification: Performance of pre-optimization done (n=9): time 1.242e-06/0.04426, allocations: 0 / 396.7 MB, free: 14.48 MB / 330.7 MB
Notification: Performance of matching and sorting (n=9): time 0.0002509/0.04451, allocations: 137.3 kB / 396.9 MB, free: 14.34 MB / 330.7 MB
Notification: Performance of inlineWhenForInitialization (initialization): time 2.9e-05/0.04454, allocations: 51.41 kB / 396.9 MB, free: 14.28 MB / 330.7 MB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0002806/0.04482, allocations: 442.5 kB / 397.4 MB, free: 13.83 MB / 330.7 MB
Notification: Performance of collectPreVariables (initialization): time 1.639e-05/0.04483, allocations: 29.7 kB / 397.4 MB, free: 13.8 MB / 330.7 MB
Notification: Performance of collectInitialEqns (initialization): time 0.0001556/0.04499, allocations: 326.3 kB / 397.7 MB, free: 13.47 MB / 330.7 MB
Notification: Performance of collectInitialBindings (initialization): time 2.267e-05/0.04501, allocations: 31.73 kB / 397.7 MB, free: 13.44 MB / 330.7 MB
Notification: Performance of simplifyInitialFunctions (initialization): time 7.751e-05/0.04509, allocations: 83.27 kB / 397.8 MB, free: 13.35 MB / 330.7 MB
Notification: Performance of setup shared object (initialization): time 0.0001481/0.04524, allocations: 0.5275 MB / 398.4 MB, free: 12.81 MB / 330.7 MB
Notification: Performance of preBalanceInitialSystem (initialization): time 5.882e-05/0.0453, allocations: 31.97 kB / 398.4 MB, free: 12.78 MB / 330.7 MB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.0001985/0.04549, allocations: 345 kB / 398.7 MB, free: 12.3 MB / 330.7 MB
Notification: Performance of analyzeInitialSystem (initialization): time 0.0003029/0.0458, allocations: 428.6 kB / 399.1 MB, free: 11.73 MB / 330.7 MB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 4.388e-06/0.0458, allocations: 4 kB / 399.1 MB, free: 11.73 MB / 330.7 MB
Notification: Performance of matching and sorting (n=38) (initialization): time 0.0003421/0.04614, allocations: 325.5 kB / 399.5 MB, free: 11.4 MB / 330.7 MB
Notification: Performance of prepare postOptimizeDAE: time 1.438e-05/0.04616, allocations: 8 kB / 399.5 MB, free: 11.39 MB / 330.7 MB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 8.416e-06/0.04617, allocations: 12 kB / 399.5 MB, free: 11.38 MB / 330.7 MB
Notification: Performance of postOpt tearingSystem (initialization): time 1.82e-05/0.04618, allocations: 12 kB / 399.5 MB, free: 11.37 MB / 330.7 MB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0001528/0.04634, allocations: 91.83 kB / 399.6 MB, free: 11.28 MB / 330.7 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 1.286e-05/0.04635, allocations: 15.88 kB / 399.6 MB, free: 11.27 MB / 330.7 MB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0001181/0.04647, allocations: 39.73 kB / 399.6 MB, free: 11.23 MB / 330.7 MB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 2.834e-05/0.0465, allocations: 27.98 kB / 399.7 MB, free: 11.2 MB / 330.7 MB
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 35
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (38):
 * Single equations (assignments): 38
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of prepare postOptimizeDAE: time 9.674e-05/0.04659, allocations: 196.5 kB / 399.9 MB, free: 11 MB / 330.7 MB
Notification: Performance of postOpt lateInlineFunction (simulation): time 3.802e-05/0.04663, allocations: 35.77 kB / 399.9 MB, free: 10.96 MB / 330.7 MB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0002751/0.04691, allocations: 239.5 kB / 400.1 MB, free: 10.69 MB / 330.7 MB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 1.593e-06/0.04691, allocations: 0 / 400.1 MB, free: 10.69 MB / 330.7 MB
Notification: Performance of postOpt constantLinearSystem (simulation): time 3.296e-06/0.04691, allocations: 0 / 400.1 MB, free: 10.69 MB / 330.7 MB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 2.024e-06/0.04691, allocations: 0 / 400.1 MB, free: 10.69 MB / 330.7 MB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.0003181/0.04723, allocations: 0.5548 MB / 400.7 MB, free: 10.09 MB / 330.7 MB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 1.573e-06/0.04723, allocations: 0 / 400.7 MB, free: 10.09 MB / 330.7 MB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 9.598e-06/0.04724, allocations: 4 kB / 400.7 MB, free: 10.08 MB / 330.7 MB
Notification: Performance of postOpt tearingSystem (simulation): time 2.024e-06/0.04724, allocations: 0 / 400.7 MB, free: 10.08 MB / 330.7 MB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 6.102e-06/0.04725, allocations: 0 / 400.7 MB, free: 10.08 MB / 330.7 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 1.773e-06/0.04725, allocations: 0 / 400.7 MB, free: 10.08 MB / 330.7 MB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 1.312e-06/0.04725, allocations: 0 / 400.7 MB, free: 10.08 MB / 330.7 MB
Notification: Performance of postOpt symbolicJacobian (simulation): time 7.344e-05/0.04733, allocations: 108.1 kB / 400.8 MB, free: 9.953 MB / 330.7 MB
Notification: Performance of postOpt removeConstants (simulation): time 2.772e-05/0.04736, allocations: 27.81 kB / 400.8 MB, free: 9.926 MB / 330.7 MB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 2.842e-05/0.04738, allocations: 7.953 kB / 400.8 MB, free: 9.918 MB / 330.7 MB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 3.717e-05/0.04742, allocations: 8.047 kB / 400.8 MB, free: 9.91 MB / 330.7 MB
Notification: Performance of postOpt findZeroCrossings (simulation): time 1.441e-05/0.04744, allocations: 0 / 400.8 MB, free: 9.91 MB / 330.7 MB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 2.735e-06/0.04744, allocations: 3.938 kB / 400.8 MB, free: 9.906 MB / 330.7 MB
Notification: Performance of sorting global known variables: time 0.0001934/0.04763, allocations: 307 kB / 401.1 MB, free: 9.605 MB / 330.7 MB
Notification: Performance of sort global known variables: time 6.1e-08/0.04763, allocations: 0 / 401.1 MB, free: 9.605 MB / 330.7 MB
Notification: Performance of remove unused functions: time 0.0003448/0.04798, allocations: 183.3 kB / 401.3 MB, free: 9.426 MB / 330.7 MB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 1
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (1):
 * Single equations (assignments): 1
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of Backend phase and start with SimCode phase: time 0.000372/0.04835, allocations: 306.5 kB / 401.6 MB, free: 9.113 MB / 330.7 MB
Notification: Performance of simCode: created initialization part: time 0.0001956/0.04854, allocations: 132.6 kB / 401.7 MB, free: 8.98 MB / 330.7 MB
Notification: Performance of simCode: created event and clocks part: time 1.633e-06/0.04855, allocations: 0 / 401.7 MB, free: 8.98 MB / 330.7 MB
Notification: Performance of simCode: created simulation system equations: time 8.717e-06/0.04855, allocations: 11.69 kB / 401.8 MB, free: 8.965 MB / 330.7 MB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0002969/0.04885, allocations: 89.3 kB / 401.8 MB, free: 8.887 MB / 330.7 MB
Error: Error parsing unit kDa: Unit not found
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.0009713/0.04982, allocations: 0.5257 MB / 402.4 MB, free: 8.332 MB / 330.7 MB
Notification: Performance of simCode: some other stuff during SimCode phase: time 4.934e-05/0.04987, allocations: 96.55 kB / 402.5 MB, free: 8.219 MB / 330.7 MB
Notification: Performance of simCode: alias equations: time 0.0001628/0.05003, allocations: 95 kB / 402.6 MB, free: 8.125 MB / 330.7 MB
Notification: Performance of simCode: all other stuff during SimCode phase: time 6.404e-05/0.0501, allocations: 44.48 kB / 402.6 MB, free: 8.082 MB / 330.7 MB
Notification: Performance of SimCode: time 9.62e-07/0.0501, allocations: 0 / 402.6 MB, free: 8.082 MB / 330.7 MB
Notification: Performance of Templates: time 0.008306/0.0584, allocations: 7.122 MB / 409.7 MB, free: 1.027 MB / 330.7 MB
"
[Timeout remaining time 660]
make -j1 -f Chemical_master_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG.makefile [Timeout 660]
(rm -f Chemical_master_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG.pipe ; mkfifo Chemical_master_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG.pipe ; head -c 1048576 < Chemical_master_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG.pipe >> ../files/Chemical_master_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG.sim & ./Chemical_master_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG -abortSlowSimulation -alarm=240  -lv LOG_STATS > Chemical_master_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 3.1330399601720273]