Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_master_Chemical.Examples.debug.EnzymeKinetics3.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001043/0.001043, allocations: 93.06 kB / 19.65 MB, free: 276 kB / 13.93 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001203/0.001203, allocations: 169 kB / 23.02 MB, free: 1.547 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9737/0.9737, allocations: 177.1 MB / 203.4 MB, free: 5.621 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo): time 0.1021/0.1021, allocations: 17.46 MB / 277.4 MB, free: 11.55 MB / 266.7 MB
"
[Timeout remaining time 180]
Using package Chemical with version 2.0.1 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Chemical.Examples.debug.EnzymeKinetics3,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Examples.debug.EnzymeKinetics3")
translateModel(Chemical.Examples.debug.EnzymeKinetics3,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Examples.debug.EnzymeKinetics3") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.563e-06/1.563e-06, allocations: 0 / 353.5 MB, free: 9.855 MB / 282.7 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 2.255e-05/2.412e-05, allocations: 10.25 kB / 353.6 MB, free: 9.844 MB / 282.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1586:5-1586:64:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1586:5-1586:64:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"system\" component but
an inner \"system\" component is not defined.
For simulation drag Modelica.Fluid.System into your model
to specify system properties.
Notification: Performance of NFInst.instantiate(Chemical.Examples.debug.EnzymeKinetics3): time 0.0332/0.03323, allocations: 39.63 MB / 393.2 MB, free: 2.309 MB / 314.7 MB
Notification: Performance of NFInst.instExpressions: time 0.01476/0.04799, allocations: 11.79 MB / 405 MB, free: 6.473 MB / 330.7 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.002363/0.05035, allocations: 111.1 kB / 405.1 MB, free: 6.363 MB / 330.7 MB
Notification: Performance of NFTyping.typeComponents: time 0.003619/0.05397, allocations: 2.136 MB / 407.2 MB, free: 4.215 MB / 330.7 MB
Notification: Performance of NFTyping.typeBindings: time 0.003868/0.05784, allocations: 1.97 MB / 409.2 MB, free: 2.23 MB / 330.7 MB
Notification: Performance of NFTyping.typeClassSections: time 0.164/0.2218, allocations: 4.539 MB / 413.7 MB, free: 36.16 MB / 330.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1332:3-1332:55:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.MM has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1333:3-1333:87:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.Hf has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1334:3-1334:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.H0 has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.blow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.bhigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1341:3-1342:83:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.z has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1344:3-1344:89:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.phase has no value, and is fixed during initialization (fixed=true), using available start value (start=Chemical.Interfaces.Phase.Gas) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1347:3-1347:140:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.VmBase has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1348:3-1348:137:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.VmExcess has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
Notification: Performance of NFFlatten.flatten: time 0.007506/0.2293, allocations: 4.793 MB / 418.5 MB, free: 35.2 MB / 330.7 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.001553/0.2309, allocations: 0.8197 MB / 419.3 MB, free: 34.97 MB / 330.7 MB
Notification: Performance of NFEvalConstants.evaluate: time 0.005684/0.2366, allocations: 2.642 MB / 422 MB, free: 34.75 MB / 330.7 MB
Notification: Performance of NFSimplifyModel.simplify: time 0.00379/0.2404, allocations: 2.107 MB / 424.1 MB, free: 34.58 MB / 330.7 MB
Notification: Performance of NFPackage.collectConstants: time 0.001027/0.2414, allocations: 407.9 kB / 424.5 MB, free: 34.58 MB / 330.7 MB
Notification: Performance of NFFlatten.collectFunctions: time 0.005258/0.2466, allocations: 2.141 MB / 426.6 MB, free: 34.5 MB / 330.7 MB
Notification: Performance of NFScalarize.scalarize: time 0.001445/0.2481, allocations: 1.383 MB / 428 MB, free: 33.91 MB / 330.7 MB
Notification: Performance of NFVerifyModel.verify: time 0.003316/0.2514, allocations: 1.499 MB / 429.5 MB, free: 33.29 MB / 330.7 MB
Notification: Performance of NFConvertDAE.convert: time 0.008854/0.2603, allocations: 5.669 MB / 435.2 MB, free: 31.03 MB / 330.7 MB
Notification: Performance of FrontEnd - DAE generated: time 5.17e-06/0.2603, allocations: 0 / 435.2 MB, free: 31.03 MB / 330.7 MB
Notification: Performance of FrontEnd: time 1.493e-06/0.2603, allocations: 0 / 435.2 MB, free: 31.03 MB / 330.7 MB
Notification: Performance of Transformations before backend: time 0.0002329/0.2605, allocations: 5.938 kB / 435.2 MB, free: 31.03 MB / 330.7 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 1270
 * Number of variables: 1270
Notification: Performance of Generate backend data structure: time 0.008184/0.2687, allocations: 5.861 MB / 441 MB, free: 27.13 MB / 330.7 MB
Notification: Performance of prepare preOptimizeDAE: time 5.323e-05/0.2687, allocations: 8.5 kB / 441 MB, free: 27.13 MB / 330.7 MB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.002954/0.2717, allocations: 2.173 MB / 443.2 MB, free: 25.07 MB / 330.7 MB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.002856/0.2745, allocations: 2.535 MB / 445.8 MB, free: 22.62 MB / 330.7 MB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.0003297/0.2749, allocations: 0.6386 MB / 446.4 MB, free: 21.92 MB / 330.7 MB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.0004038/0.2753, allocations: 397.4 kB / 446.8 MB, free: 21.54 MB / 330.7 MB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.006414/0.2817, allocations: 5.788 MB / 452.6 MB, free: 15.74 MB / 330.7 MB
Notification: Performance of preOpt findStateOrder (simulation): time 5.688e-05/0.2817, allocations: 192 / 452.6 MB, free: 15.74 MB / 330.7 MB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.0001962/0.2819, allocations: 158.2 kB / 452.7 MB, free: 15.6 MB / 330.7 MB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 0.0003317/0.2823, allocations: 0.5947 MB / 453.3 MB, free: 15 MB / 330.7 MB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.00787/0.2901, allocations: 7.482 MB / 460.8 MB, free: 7.512 MB / 330.7 MB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.0261/0.3162, allocations: 20.12 MB / 480.9 MB, free: 3.734 MB / 346.7 MB
Notification: Performance of preOpt comSubExp (simulation): time 0.002758/0.319, allocations: 1.814 MB / 482.7 MB, free: 1.941 MB / 346.7 MB
Notification: Performance of preOpt resolveLoops (simulation): time 0.001718/0.3207, allocations: 1.314 MB / 484.1 MB, free: 0.625 MB / 346.7 MB
Notification: Performance of preOpt evalFunc (simulation): time 0.01491/0.3356, allocations: 12.33 MB / 496.4 MB, free: 4.367 MB / 362.7 MB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 4.99e-05/0.3357, allocations: 59.33 kB / 496.4 MB, free: 4.301 MB / 362.7 MB
Notification: Performance of pre-optimization done (n=227): time 5.4e-06/0.3357, allocations: 0 / 496.4 MB, free: 4.301 MB / 362.7 MB
Notification: Performance of matching and sorting (n=324): time 0.04129/0.377, allocations: 20.71 MB / 0.505 GB, free: 15.66 MB / 394.7 MB
Notification: Performance of inlineWhenForInitialization (initialization): time 4.993e-05/0.377, allocations: 80.5 kB / 0.5051 GB, free: 15.57 MB / 394.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1348:3-1348:137:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.VmExcess has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1347:3-1347:140:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.VmBase has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1344:3-1344:89:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.phase has no value, and is fixed during initialization (fixed=true), using available start value (start=Chemical.Interfaces.Phase.Gas) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1341:3-1342:83:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.z has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.bhigh[3] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.bhigh[2] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.bhigh[1] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[7] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[6] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[5] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[4] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[3] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[2] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[1] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.blow[3] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.blow[2] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.blow[1] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[7] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[6] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[5] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[4] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[3] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[2] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[1] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1334:3-1334:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.H0 has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1333:3-1333:87:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.Hf has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1332:3-1332:55:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.MM has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.003089/0.3801, allocations: 2.41 MB / 0.5075 GB, free: 13.14 MB / 394.7 MB
Notification: Performance of collectPreVariables (initialization): time 0.001017/0.3811, allocations: 65.7 kB / 0.5075 GB, free: 13.07 MB / 394.7 MB
Notification: Performance of collectInitialEqns (initialization): time 0.001513/0.3826, allocations: 2.476 MB / 0.5099 GB, free: 10.59 MB / 394.7 MB
Notification: Performance of collectInitialBindings (initialization): time 0.001423/0.3841, allocations: 1.142 MB / 0.5111 GB, free: 9.461 MB / 394.7 MB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.001824/0.3859, allocations: 1.02 MB / 0.512 GB, free: 8.43 MB / 394.7 MB
Notification: Performance of setup shared object (initialization): time 0.0001155/0.386, allocations: 480.7 kB / 0.5125 GB, free: 7.957 MB / 394.7 MB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.002667/0.3887, allocations: 1.912 MB / 0.5144 GB, free: 6.043 MB / 394.7 MB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.003396/0.3921, allocations: 3.607 MB / 0.5179 GB, free: 1.762 MB / 394.7 MB
Notification: It was not possible to check the given initialization system for consistency symbolically, because the relevant equations are part of an algebraic loop. This is not supported yet.
Notification: Performance of analyzeInitialSystem (initialization): time 0.009858/0.4019, allocations: 8.346 MB / 0.526 GB, free: 8.922 MB / 410.7 MB
Warning: It was not possible to solve the under-determined initial system (301 equations and 329 variables)
Error: No system for the symbolic initialization was generated
"
[Timeout remaining time 660]
[Calling sys.exit(0), Time elapsed: 2.199194055981934]