Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_master_Chemical.Examples.debug.EnzymeKinetics2.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.00112/0.00112, allocations: 97.06 kB / 19.65 MB, free: 276 kB / 13.93 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001162/0.001162, allocations: 173 kB / 23.02 MB, free: 1.547 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9968/0.9968, allocations: 177.1 MB / 203.4 MB, free: 5.641 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo): time 0.09319/0.09319, allocations: 17.47 MB / 277.4 MB, free: 11.55 MB / 266.7 MB
"
[Timeout remaining time 180]
Using package Chemical with version 2.0.1 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Chemical.Examples.debug.EnzymeKinetics2,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Examples.debug.EnzymeKinetics2")
translateModel(Chemical.Examples.debug.EnzymeKinetics2,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Examples.debug.EnzymeKinetics2") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.914e-06/1.914e-06, allocations: 0 / 353.5 MB, free: 9.848 MB / 282.7 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 2.506e-05/2.697e-05, allocations: 6.25 kB / 353.5 MB, free: 9.84 MB / 282.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1586:5-1586:64:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1586:5-1586:64:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"system\" component but
an inner \"system\" component is not defined.
For simulation drag Modelica.Fluid.System into your model
to specify system properties.
Notification: Performance of NFInst.instantiate(Chemical.Examples.debug.EnzymeKinetics2): time 0.0411/0.04113, allocations: 39.63 MB / 393.2 MB, free: 2.297 MB / 314.7 MB
Notification: Performance of NFInst.instExpressions: time 0.01846/0.05959, allocations: 11.78 MB / 405 MB, free: 6.473 MB / 330.7 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.002634/0.06222, allocations: 111.1 kB / 405.1 MB, free: 6.363 MB / 330.7 MB
Notification: Performance of NFTyping.typeComponents: time 0.004317/0.06654, allocations: 2.148 MB / 407.2 MB, free: 4.203 MB / 330.7 MB
Notification: Performance of NFTyping.typeBindings: time 0.004268/0.0708, allocations: 1.963 MB / 409.2 MB, free: 2.219 MB / 330.7 MB
Notification: Performance of NFTyping.typeClassSections: time 0.2843/0.3551, allocations: 4.54 MB / 413.7 MB, free: 30.48 MB / 330.8 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1332:3-1332:55:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.MM has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1333:3-1333:87:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.Hf has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1334:3-1334:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.H0 has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.blow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.bhigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1341:3-1342:83:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.z has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1344:3-1344:89:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.phase has no value, and is fixed during initialization (fixed=true), using available start value (start=Chemical.Interfaces.Phase.Gas) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1347:3-1347:140:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.VmBase has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1348:3-1348:137:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.VmExcess has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
Notification: Performance of NFFlatten.flatten: time 0.006386/0.3615, allocations: 4.797 MB / 418.5 MB, free: 29.51 MB / 330.8 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.001014/0.3625, allocations: 0.8168 MB / 419.3 MB, free: 29.28 MB / 330.8 MB
Notification: Performance of NFEvalConstants.evaluate: time 0.002754/0.3653, allocations: 2.636 MB / 422 MB, free: 29.06 MB / 330.8 MB
Notification: Performance of NFSimplifyModel.simplify: time 0.001973/0.3672, allocations: 2.109 MB / 424.1 MB, free: 28.89 MB / 330.8 MB
Notification: Performance of NFPackage.collectConstants: time 0.0002932/0.3675, allocations: 407.3 kB / 424.5 MB, free: 28.89 MB / 330.8 MB
Notification: Performance of NFFlatten.collectFunctions: time 0.003567/0.3711, allocations: 2.148 MB / 426.6 MB, free: 28.81 MB / 330.8 MB
Notification: Performance of NFScalarize.scalarize: time 0.0006357/0.3717, allocations: 1.382 MB / 428 MB, free: 28.2 MB / 330.8 MB
Notification: Performance of NFVerifyModel.verify: time 0.001/0.3727, allocations: 1.497 MB / 429.5 MB, free: 27.58 MB / 330.8 MB
Notification: Performance of NFConvertDAE.convert: time 0.004362/0.3771, allocations: 5.673 MB / 435.2 MB, free: 25.32 MB / 330.8 MB
Notification: Performance of FrontEnd - DAE generated: time 3.065e-06/0.3771, allocations: 0 / 435.2 MB, free: 25.32 MB / 330.8 MB
Notification: Performance of FrontEnd: time 1.012e-06/0.3771, allocations: 0 / 435.2 MB, free: 25.32 MB / 330.8 MB
Notification: Performance of Transformations before backend: time 3.522e-05/0.3771, allocations: 0 / 435.2 MB, free: 25.32 MB / 330.8 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 1270
 * Number of variables: 1270
Notification: Performance of Generate backend data structure: time 0.005009/0.3822, allocations: 5.858 MB / 441 MB, free: 21.42 MB / 330.8 MB
Notification: Performance of prepare preOptimizeDAE: time 4.58e-05/0.3822, allocations: 10.81 kB / 441 MB, free: 21.42 MB / 330.8 MB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.00205/0.3842, allocations: 2.167 MB / 443.2 MB, free: 20.37 MB / 330.8 MB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.001904/0.3861, allocations: 2.546 MB / 445.8 MB, free: 18.6 MB / 330.8 MB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.0002554/0.3864, allocations: 0.6308 MB / 446.4 MB, free: 18.08 MB / 330.8 MB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.0003211/0.3867, allocations: 393.7 kB / 446.8 MB, free: 17.96 MB / 330.8 MB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.004736/0.3915, allocations: 5.795 MB / 452.6 MB, free: 13.77 MB / 330.8 MB
Notification: Performance of preOpt findStateOrder (simulation): time 4.858e-05/0.3915, allocations: 192 / 452.6 MB, free: 13.77 MB / 330.8 MB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.0001753/0.3917, allocations: 159 kB / 452.7 MB, free: 13.62 MB / 330.8 MB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 0.0003008/0.392, allocations: 0.5976 MB / 453.3 MB, free: 13.03 MB / 330.8 MB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.00638/0.3984, allocations: 7.479 MB / 460.8 MB, free: 5.535 MB / 330.8 MB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.01857/0.4169, allocations: 20.13 MB / 480.9 MB, free: 1.758 MB / 346.8 MB
Notification: Performance of preOpt comSubExp (simulation): time 0.002078/0.419, allocations: 1.815 MB / 482.7 MB, free: 15.96 MB / 362.8 MB
Notification: Performance of preOpt resolveLoops (simulation): time 0.00143/0.4204, allocations: 1.304 MB / 484 MB, free: 14.66 MB / 362.8 MB
Notification: Performance of preOpt evalFunc (simulation): time 0.01255/0.433, allocations: 12.34 MB / 496.4 MB, free: 2.391 MB / 362.8 MB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 3.863e-05/0.433, allocations: 59.33 kB / 496.4 MB, free: 2.324 MB / 362.8 MB
Notification: Performance of pre-optimization done (n=227): time 3.617e-06/0.433, allocations: 0 / 496.4 MB, free: 2.324 MB / 362.8 MB
Notification: Performance of matching and sorting (n=324): time 0.0382/0.4712, allocations: 20.7 MB / 0.505 GB, free: 13.68 MB / 394.8 MB
Notification: Performance of inlineWhenForInitialization (initialization): time 5.179e-05/0.4713, allocations: 80.06 kB / 0.5051 GB, free: 13.59 MB / 394.8 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1348:3-1348:137:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.VmExcess has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1347:3-1347:140:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.VmBase has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1344:3-1344:89:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.phase has no value, and is fixed during initialization (fixed=true), using available start value (start=Chemical.Interfaces.Phase.Gas) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1341:3-1342:83:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.z has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.bhigh[3] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.bhigh[2] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.bhigh[1] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[7] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[6] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[5] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[4] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[3] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[2] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[1] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.blow[3] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.blow[2] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.blow[1] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[7] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[6] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[5] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[4] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[3] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[2] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[1] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1334:3-1334:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.H0 has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1333:3-1333:87:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.Hf has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1332:3-1332:55:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.MM has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.002496/0.4738, allocations: 2.411 MB / 0.5075 GB, free: 11.16 MB / 394.8 MB
Notification: Performance of collectPreVariables (initialization): time 0.0002777/0.4741, allocations: 68.36 kB / 0.5075 GB, free: 11.09 MB / 394.8 MB
Notification: Performance of collectInitialEqns (initialization): time 0.001184/0.4752, allocations: 2.472 MB / 0.5099 GB, free: 8.613 MB / 394.8 MB
Notification: Performance of collectInitialBindings (initialization): time 0.0007966/0.476, allocations: 1.147 MB / 0.5111 GB, free: 7.48 MB / 394.8 MB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.001283/0.4773, allocations: 1.023 MB / 0.5121 GB, free: 6.449 MB / 394.8 MB
Notification: Performance of setup shared object (initialization): time 0.0002054/0.4775, allocations: 476.8 kB / 0.5125 GB, free: 5.98 MB / 394.8 MB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.002323/0.4799, allocations: 1.919 MB / 0.5144 GB, free: 4.062 MB / 394.8 MB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.003299/0.4832, allocations: 3.602 MB / 0.5179 GB, free: 15.79 MB / 410.8 MB
Notification: It was not possible to check the given initialization system for consistency symbolically, because the relevant equations are part of an algebraic loop. This is not supported yet.
Notification: Performance of analyzeInitialSystem (initialization): time 0.009441/0.4926, allocations: 8.344 MB / 0.526 GB, free: 6.949 MB / 410.8 MB
Warning: It was not possible to solve the under-determined initial system (301 equations and 329 variables)
Error: No system for the symbolic initialization was generated
"
[Timeout remaining time 659]
[Calling sys.exit(0), Time elapsed: 2.2765107289887965]