Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_Chemical.Obsolete.Examples.Hemoglobin.Joels57.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001296/0.001296, allocations: 93.06 kB / 19.65 MB, free: 280 kB / 13.93 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001262/0.001262, allocations: 169 kB / 23.02 MB, free: 1.551 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9309/0.9309, allocations: 177.1 MB / 203.4 MB, free: 5.648 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo): time 0.09596/0.09596, allocations: 17.38 MB / 277.3 MB, free: 11.66 MB / 266.7 MB
"
[Timeout remaining time 180]
Using package Chemical with version 2.0.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Chemical.Obsolete.Examples.Hemoglobin.Joels57,tolerance=1e-05,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_Chemical.Obsolete.Examples.Hemoglobin.Joels57")
translateModel(Chemical.Obsolete.Examples.Hemoglobin.Joels57,tolerance=1e-05,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_Chemical.Obsolete.Examples.Hemoglobin.Joels57") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 2.044e-06/2.044e-06, allocations: 0 / 353.4 MB, free: 9.973 MB / 282.7 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 3.075e-05/3.279e-05, allocations: 6.312 kB / 353.4 MB, free: 9.965 MB / 282.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/Obsolete.mo:14337:7-14337:66:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/Obsolete.mo:14337:7-14337:66:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"system\" component but
an inner \"system\" component is not defined.
For simulation drag Modelica.Fluid.System into your model
to specify system properties.
Notification: Performance of NFInst.instantiate(Chemical.Obsolete.Examples.Hemoglobin.Joels57): time 0.1982/0.1983, allocations: 80.23 MB / 433.7 MB, free: 12.46 MB / 330.7 MB
Notification: Performance of NFInst.instExpressions: time 0.06976/0.268, allocations: 66.78 MB / 0.4887 GB, free: 2.988 MB / 362.7 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.01159/0.2796, allocations: 226.2 kB / 0.4889 GB, free: 2.766 MB / 362.7 MB
Notification: Performance of NFTyping.typeComponents: time 0.0117/0.2913, allocations: 2.737 MB / 0.4916 GB, free: 4 kB / 362.7 MB
Notification: Performance of NFTyping.typeBindings: time 0.02382/0.3151, allocations: 9.407 MB / 0.5008 GB, free: 6.527 MB / 378.7 MB
Notification: Performance of NFTyping.typeClassSections: time 0.0276/0.3427, allocations: 14.83 MB / 0.5153 GB, free: 7.641 MB / 394.7 MB
Notification: Performance of NFFlatten.flatten: time 0.3736/0.7164, allocations: 91.33 MB / 0.6045 GB, free: 12.47 MB / 442.8 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.06856/0.7849, allocations: 54.61 MB / 0.6578 GB, free: 9.793 MB / 458.8 MB
Notification: Performance of NFEvalConstants.evaluate: time 0.1204/0.9053, allocations: 75.04 MB / 0.7311 GB, free: 3.078 MB / 0.4949 GB
Notification: Performance of NFSimplifyModel.simplify: time 0.5387/1.444, allocations: 51.47 MB / 0.7814 GB, free: 50.79 MB / 0.5263 GB
Notification: Performance of NFPackage.collectConstants: time 0.04244/1.486, allocations: 12.21 MB / 0.7933 GB, free: 50.79 MB / 0.5263 GB
Notification: Performance of NFFlatten.collectFunctions: time 0.0618/1.548, allocations: 17.33 MB / 0.8102 GB, free: 50.79 MB / 0.5263 GB
Notification: Performance of NFScalarize.scalarize: time 0.04792/1.596, allocations: 24.28 MB / 0.8339 GB, free: 50.79 MB / 0.5263 GB
Notification: Performance of NFVerifyModel.verify: time 0.08781/1.684, allocations: 31.12 MB / 0.8643 GB, free: 40.61 MB / 0.5263 GB
Notification: Performance of NFConvertDAE.convert: time 0.1549/1.839, allocations: 87 MB / 0.9493 GB, free: 14.19 MB / 0.5575 GB
Notification: Performance of FrontEnd - DAE generated: time 1.073e-05/1.839, allocations: 3.984 kB / 0.9493 GB, free: 14.18 MB / 0.5575 GB
Notification: Performance of FrontEnd: time 2.675e-06/1.839, allocations: 2.438 kB / 0.9493 GB, free: 14.18 MB / 0.5575 GB
Notification: Performance of Transformations before backend: time 0.003913/1.843, allocations: 3.281 kB / 0.9493 GB, free: 14.18 MB / 0.5575 GB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 11424
 * Number of variables: 11424
Notification: Performance of Generate backend data structure: time 0.6146/2.457, allocations: 70.3 MB / 1.018 GB, free: 119 MB / 0.5734 GB
Notification: Performance of prepare preOptimizeDAE: time 4.9e-05/2.457, allocations: 11.19 kB / 1.018 GB, free: 119 MB / 0.5734 GB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.09086/2.548, allocations: 19.72 MB / 1.037 GB, free: 114.7 MB / 0.5734 GB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.07785/2.626, allocations: 37.74 MB / 1.074 GB, free: 98.8 MB / 0.5734 GB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.005709/2.632, allocations: 9.207 MB / 1.083 GB, free: 90.3 MB / 0.5734 GB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.02364/2.656, allocations: 4.553 MB / 1.087 GB, free: 87.07 MB / 0.5734 GB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.1791/2.835, allocations: 58.04 MB / 1.144 GB, free: 28.23 MB / 0.5734 GB
Notification: Performance of preOpt findStateOrder (simulation): time 0.001907/2.836, allocations: 33.12 kB / 1.144 GB, free: 28.21 MB / 0.5734 GB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.02428/2.861, allocations: 1.762 MB / 1.146 GB, free: 26.45 MB / 0.5734 GB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 0.0006567/2.861, allocations: 1.059 MB / 1.147 GB, free: 25.39 MB / 0.5734 GB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.4469/3.308, allocations: 61.5 MB / 1.207 GB, free: 116.1 MB / 0.6046 GB
Warning: The model contains alias variables with redundant start and/or conflicting nominal values. It is recommended to resolve the conflicts, because otherwise the system could be hard to solve. To print the conflicting alias sets and the chosen candidates please use -d=aliasConflicts.
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.8718/4.18, allocations: 280.8 MB / 1.481 GB, free: 87.04 MB / 0.6203 GB
Notification: Performance of preOpt comSubExp (simulation): time 2.446/6.626, allocations: 0.9709 GB / 2.452 GB, free: 154.6 MB / 0.6515 GB
Notification: Performance of preOpt resolveLoops (simulation): time 0.06524/6.691, allocations: 23.28 MB / 2.475 GB, free: 154 MB / 0.6515 GB
Notification: Performance of preOpt evalFunc (simulation): time 0.3405/7.032, allocations: 156.8 MB / 2.628 GB, free: 33.3 MB / 0.6515 GB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.0001827/7.032, allocations: 340.5 kB / 2.628 GB, free: 32.96 MB / 0.6515 GB
Notification: Performance of preOpt simplifyInStream (simulation): time 0.3214/7.353, allocations: 27.65 MB / 2.655 GB, free: 166 MB / 0.6515 GB
Notification: Performance of pre-optimization done (n=2949): time 0.0001887/7.353, allocations: 0 / 2.655 GB, free: 166 MB / 0.6515 GB
Notification: Performance of matching and sorting (n=3351): time 1.351/8.705, allocations: 230.6 MB / 2.88 GB, free: 135.5 MB / 0.6515 GB
Notification: Performance of inlineWhenForInitialization (initialization): time 0.0003578/8.705, allocations: 447.5 kB / 2.881 GB, free: 135.4 MB / 0.6515 GB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.04476/8.75, allocations: 25.98 MB / 2.906 GB, free: 133.9 MB / 0.6515 GB
Notification: Performance of collectPreVariables (initialization): time 0.01224/8.762, allocations: 0.5649 MB / 2.907 GB, free: 133.9 MB / 0.6515 GB
Notification: Performance of collectInitialEqns (initialization): time 0.01721/8.779, allocations: 23.23 MB / 2.93 GB, free: 130.9 MB / 0.6515 GB
Notification: Performance of collectInitialBindings (initialization): time 0.02122/8.801, allocations: 12.84 MB / 2.942 GB, free: 122.5 MB / 0.6515 GB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.04399/8.845, allocations: 10.31 MB / 2.952 GB, free: 118.1 MB / 0.6515 GB
Notification: Performance of setup shared object (initialization): time 5.106e-05/8.845, allocations: 476.8 kB / 2.953 GB, free: 117.7 MB / 0.6515 GB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.03271/8.877, allocations: 11.65 MB / 2.964 GB, free: 116.3 MB / 0.6515 GB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.04202/8.919, allocations: 32.17 MB / 2.995 GB, free: 89.67 MB / 0.6515 GB
Notification: Performance of analyzeInitialSystem (initialization): time 0.07224/8.992, allocations: 48.26 MB / 3.043 GB, free: 58.12 MB / 0.6515 GB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 0.0006006/8.992, allocations: 126.5 kB / 3.043 GB, free: 58.12 MB / 0.6515 GB
Notification: Performance of matching and sorting (n=5583) (initialization): time 0.947/9.939, allocations: 135.2 MB / 3.175 GB, free: 79.07 MB / 0.6515 GB
Notification: Performance of prepare postOptimizeDAE: time 0.0003504/9.94, allocations: 190.6 kB / 3.175 GB, free: 79.07 MB / 0.6515 GB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 0.000536/9.94, allocations: 435.7 kB / 3.175 GB, free: 79.07 MB / 0.6515 GB
Notification: Performance of postOpt tearingSystem (initialization): time 0.2818/10.22, allocations: 158.8 MB / 3.33 GB, free: 4.754 MB / 0.6828 GB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.3326/10.55, allocations: 11.06 MB / 3.341 GB, free: 132.9 MB / 0.6828 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 0.2457/10.8, allocations: 88 MB / 3.427 GB, free: 115.7 MB / 0.6828 GB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.03792/10.84, allocations: 2.482 MB / 3.429 GB, free: 115.7 MB / 0.6828 GB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.01291/10.85, allocations: 2.73 MB / 3.432 GB, free: 115.7 MB / 0.6828 GB
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 1983
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (5439):
 * Single equations (assignments): 5430
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 9
 * Mixed (continuous/discrete) equation systems: 0
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 6 systems
   {(1,3,100.0%), (33,10,82.4%), (1,3,100.0%), (33,10,82.4%), (1,3,100.0%), (33,10,82.4%)}
 * Non-linear torn systems (#iteration vars, #inner vars): 3 systems
   {(1,3), (1,3), (1,3)}
Notification: Performance of prepare postOptimizeDAE: time 0.03653/10.89, allocations: 2.902 MB / 3.435 GB, free: 115.5 MB / 0.6828 GB
Notification: Performance of postOpt lateInlineFunction (simulation): time 0.02399/10.91, allocations: 4.164 MB / 3.439 GB, free: 115.5 MB / 0.6828 GB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.4182/11.33, allocations: 91.03 MB / 3.528 GB, free: 52.63 MB / 0.6828 GB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 0.0003546/11.33, allocations: 356 kB / 3.528 GB, free: 52.28 MB / 0.6828 GB
Notification: Performance of postOpt constantLinearSystem (simulation): time 0.0004218/11.33, allocations: 56 kB / 3.528 GB, free: 52.23 MB / 0.6828 GB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 0.001342/11.33, allocations: 177.1 kB / 3.528 GB, free: 52.05 MB / 0.6828 GB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.8267/12.16, allocations: 147.1 MB / 3.672 GB, free: 104.5 MB / 0.6828 GB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 0.0002388/12.16, allocations: 8.781 kB / 3.672 GB, free: 104.5 MB / 0.6828 GB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.02546/12.18, allocations: 7.223 MB / 3.679 GB, free: 104.5 MB / 0.6828 GB
Notification: Performance of postOpt tearingSystem (simulation): time 0.1379/12.32, allocations: 53.07 MB / 3.731 GB, free: 85.66 MB / 0.6828 GB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 0.0102/12.33, allocations: 1.397 MB / 3.732 GB, free: 84.26 MB / 0.6828 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 0.1396/12.47, allocations: 49.28 MB / 3.781 GB, free: 34.41 MB / 0.6828 GB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 7.464e-06/12.47, allocations: 15.28 kB / 3.781 GB, free: 34.4 MB / 0.6828 GB
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.7786/13.25, allocations: 104.4 MB / 3.882 GB, free: 102.8 MB / 0.6828 GB
Notification: Performance of postOpt removeConstants (simulation): time 0.02922/13.28, allocations: 9.753 MB / 3.892 GB, free: 102.7 MB / 0.6828 GB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.01567/13.3, allocations: 0.8838 MB / 3.893 GB, free: 102.7 MB / 0.6828 GB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.03091/13.33, allocations: 1.568 MB / 3.894 GB, free: 102.7 MB / 0.6828 GB
Notification: Performance of postOpt findZeroCrossings (simulation): time 0.01803/13.34, allocations: 5.117 MB / 3.899 GB, free: 102.7 MB / 0.6828 GB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 0.01038/13.35, allocations: 1.345 MB / 3.901 GB, free: 102.7 MB / 0.6828 GB
Notification: Performance of sorting global known variables: time 0.0372/13.39, allocations: 14.78 MB / 3.915 GB, free: 101.7 MB / 0.6828 GB
Notification: Performance of sort global known variables: time 2.31e-07/13.39, allocations: 0 / 3.915 GB, free: 101.7 MB / 0.6828 GB
Notification: Performance of remove unused functions: time 0.06757/13.46, allocations: 15.4 MB / 3.93 GB, free: 101.7 MB / 0.6828 GB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 45
 * Number of states: 180 (pCO2_2000.solution.temperature,pCO2_2000.O2_free.logn,pCO2_2000.H2O.logn,pCO2_2000.relaxed.OxyHm[1].logn,pCO2_2000.relaxed.OxyHm[2].logn,pCO2_2000.relaxed.OxyHm[3].logn,pCO2_2000.relaxed.OxyHm[4].logn,pCO2_2000.relaxed.DeoxyHm[1].logn,pCO2_2000.relaxed.DeoxyHm[2].logn,pCO2_2000.relaxed.DeoxyHm[3].logn,pCO2_2000.relaxed.DeoxyHm[4].logn,pCO2_2000.relaxed.HmAH[1].logn,pCO2_2000.relaxed.HmAH[2].logn,pCO2_2000.relaxed.HmAH[3].logn,pCO2_2000.relaxed.HmAH[4].logn,pCO2_2000.relaxed.HmA[1].logn,pCO2_2000.relaxed.HmA[2].logn,pCO2_2000.relaxed.HmA[3].logn,pCO2_2000.relaxed.HmA[4].logn,pCO2_2000.relaxed.HmNH3[1].logn,pCO2_2000.relaxed.HmNH3[2].logn,pCO2_2000.relaxed.HmNH3[3].logn,pCO2_2000.relaxed.HmNH3[4].logn,pCO2_2000.relaxed.HmNH2[1].logn,pCO2_2000.relaxed.HmNH2[2].logn,pCO2_2000.relaxed.HmNH2[3].logn,pCO2_2000.relaxed.HmNH2[4].logn,pCO2_2000.relaxed.HmNHCOO[1].logn,pCO2_2000.relaxed.HmNHCOO[2].logn,pCO2_2000.relaxed.HmNHCOO[3].logn,pCO2_2000.relaxed.HmNHCOO[4].logn,pCO2_2000.tensed.OxyHm[1].logn,pCO2_2000.tensed.OxyHm[2].logn,pCO2_2000.tensed.OxyHm[3].logn,pCO2_2000.tensed.OxyHm[4].logn,pCO2_2000.tensed.DeoxyHm[1].logn,pCO2_2000.tensed.DeoxyHm[2].logn,pCO2_2000.tensed.DeoxyHm[3].logn,pCO2_2000.tensed.DeoxyHm[4].logn,pCO2_2000.tensed.HmAH[1].logn,pCO2_2000.tensed.HmAH[2].logn,pCO2_2000.tensed.HmAH[3].logn,pCO2_2000.tensed.HmAH[4].logn,pCO2_2000.tensed.HmA[1].logn,pCO2_2000.tensed.HmA[2].logn,pCO2_2000.tensed.HmA[3].logn,pCO2_2000.tensed.HmA[4].logn,pCO2_2000.tensed.HmNH3[1].logn,pCO2_2000.tensed.HmNH3[2].logn,pCO2_2000.tensed.HmNH3[3].logn,pCO2_2000.tensed.HmNH3[4].logn,pCO2_2000.tensed.HmNH2[1].logn,pCO2_2000.tensed.HmNH2[2].logn,pCO2_2000.tensed.HmNH2[3].logn,pCO2_2000.tensed.HmNH2[4].logn,pCO2_2000.tensed.HmNHCOO[1].logn,pCO2_2000.tensed.HmNHCOO[2].logn,pCO2_2000.tensed.HmNHCOO[3].logn,pCO2_2000.tensed.HmNHCOO[4].logn,pCO2_2000.CO2_free.logn,pCO2_5330.solution.temperature,pCO2_5330.O2_free.logn,pCO2_5330.H2O.logn,pCO2_5330.relaxed.OxyHm[1].logn,pCO2_5330.relaxed.OxyHm[2].logn,pCO2_5330.relaxed.OxyHm[3].logn,pCO2_5330.relaxed.OxyHm[4].logn,pCO2_5330.relaxed.DeoxyHm[1].logn,pCO2_5330.relaxed.DeoxyHm[2].logn,pCO2_5330.relaxed.DeoxyHm[3].logn,pCO2_5330.relaxed.DeoxyHm[4].logn,pCO2_5330.relaxed.HmAH[1].logn,pCO2_5330.relaxed.HmAH[2].logn,pCO2_5330.relaxed.HmAH[3].logn,pCO2_5330.relaxed.HmAH[4].logn,pCO2_5330.relaxed.HmA[1].logn,pCO2_5330.relaxed.HmA[2].logn,pCO2_5330.relaxed.HmA[3].logn,pCO2_5330.relaxed.HmA[4].logn,pCO2_5330.relaxed.HmNH3[1].logn,pCO2_5330.relaxed.HmNH3[2].logn,pCO2_5330.relaxed.HmNH3[3].logn,pCO2_5330.relaxed.HmNH3[4].logn,pCO2_5330.relaxed.HmNH2[1].logn,pCO2_5330.relaxed.HmNH2[2].logn,pCO2_5330.relaxed.HmNH2[3].logn,pCO2_5330.relaxed.HmNH2[4].logn,pCO2_5330.relaxed.HmNHCOO[1].logn,pCO2_5330.relaxed.HmNHCOO[2].logn,pCO2_5330.relaxed.HmNHCOO[3].logn,pCO2_5330.relaxed.HmNHCOO[4].logn,pCO2_5330.tensed.OxyHm[1].logn,pCO2_5330.tensed.OxyHm[2].logn,pCO2_5330.tensed.OxyHm[3].logn,pCO2_5330.tensed.OxyHm[4].logn,pCO2_5330.tensed.DeoxyHm[1].logn,pCO2_5330.tensed.DeoxyHm[2].logn,pCO2_5330.tensed.DeoxyHm[3].logn,pCO2_5330.tensed.DeoxyHm[4].logn,pCO2_5330.tensed.HmAH[1].logn,pCO2_5330.tensed.HmAH[2].logn,pCO2_5330.tensed.HmAH[3].logn,pCO2_5330.tensed.HmAH[4].logn,pCO2_5330.tensed.HmA[1].logn,pCO2_5330.tensed.HmA[2].logn,pCO2_5330.tensed.HmA[3].logn,pCO2_5330.tensed.HmA[4].logn,pCO2_5330.tensed.HmNH3[1].logn,pCO2_5330.tensed.HmNH3[2].logn,pCO2_5330.tensed.HmNH3[3].logn,pCO2_5330.tensed.HmNH3[4].logn,pCO2_5330.tensed.HmNH2[1].logn,pCO2_5330.tensed.HmNH2[2].logn,pCO2_5330.tensed.HmNH2[3].logn,pCO2_5330.tensed.HmNH2[4].logn,pCO2_5330.tensed.HmNHCOO[1].logn,pCO2_5330.tensed.HmNHCOO[2].logn,pCO2_5330.tensed.HmNHCOO[3].logn,pCO2_5330.tensed.HmNHCOO[4].logn,pCO2_5330.CO2_free.logn,pCO2_9330.solution.temperature,pCO2_9330.O2_free.logn,pCO2_9330.H2O.logn,pCO2_9330.relaxed.OxyHm[1].logn,pCO2_9330.relaxed.OxyHm[2].logn,pCO2_9330.relaxed.OxyHm[3].logn,pCO2_9330.relaxed.OxyHm[4].logn,pCO2_9330.relaxed.DeoxyHm[1].logn,pCO2_9330.relaxed.DeoxyHm[2].logn,pCO2_9330.relaxed.DeoxyHm[3].logn,pCO2_9330.relaxed.DeoxyHm[4].logn,pCO2_9330.relaxed.HmAH[1].logn,pCO2_9330.relaxed.HmAH[2].logn,pCO2_9330.relaxed.HmAH[3].logn,pCO2_9330.relaxed.HmAH[4].logn,pCO2_9330.relaxed.HmA[1].logn,pCO2_9330.relaxed.HmA[2].logn,pCO2_9330.relaxed.HmA[3].logn,pCO2_9330.relaxed.HmA[4].logn,pCO2_9330.relaxed.HmNH3[1].logn,pCO2_9330.relaxed.HmNH3[2].logn,pCO2_9330.relaxed.HmNH3[3].logn,pCO2_9330.relaxed.HmNH3[4].logn,pCO2_9330.relaxed.HmNH2[1].logn,pCO2_9330.relaxed.HmNH2[2].logn,pCO2_9330.relaxed.HmNH2[3].logn,pCO2_9330.relaxed.HmNH2[4].logn,pCO2_9330.relaxed.HmNHCOO[1].logn,pCO2_9330.relaxed.HmNHCOO[2].logn,pCO2_9330.relaxed.HmNHCOO[3].logn,pCO2_9330.relaxed.HmNHCOO[4].logn,pCO2_9330.tensed.OxyHm[1].logn,pCO2_9330.tensed.OxyHm[2].logn,pCO2_9330.tensed.OxyHm[3].logn,pCO2_9330.tensed.OxyHm[4].logn,pCO2_9330.tensed.DeoxyHm[1].logn,pCO2_9330.tensed.DeoxyHm[2].logn,pCO2_9330.tensed.DeoxyHm[3].logn,pCO2_9330.tensed.DeoxyHm[4].logn,pCO2_9330.tensed.HmAH[1].logn,pCO2_9330.tensed.HmAH[2].logn,pCO2_9330.tensed.HmAH[3].logn,pCO2_9330.tensed.HmAH[4].logn,pCO2_9330.tensed.HmA[1].logn,pCO2_9330.tensed.HmA[2].logn,pCO2_9330.tensed.HmA[3].logn,pCO2_9330.tensed.HmA[4].logn,pCO2_9330.tensed.HmNH3[1].logn,pCO2_9330.tensed.HmNH3[2].logn,pCO2_9330.tensed.HmNH3[3].logn,pCO2_9330.tensed.HmNH3[4].logn,pCO2_9330.tensed.HmNH2[1].logn,pCO2_9330.tensed.HmNH2[2].logn,pCO2_9330.tensed.HmNH2[3].logn,pCO2_9330.tensed.HmNH2[4].logn,pCO2_9330.tensed.HmNHCOO[1].logn,pCO2_9330.tensed.HmNHCOO[2].logn,pCO2_9330.tensed.HmNHCOO[3].logn,pCO2_9330.tensed.HmNHCOO[4].logn,pCO2_9330.CO2_free.logn)
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (3666):
 * Single equations (assignments): 3657
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 9
 * Mixed (continuous/discrete) equation systems: 0
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 6 systems
   {(1,3,100.0%), (33,10,82.4%), (1,3,100.0%), (33,10,82.4%), (1,3,100.0%), (33,10,82.4%)}
 * Non-linear torn systems (#iteration vars, #inner vars): 3 systems
   {(1,3), (1,3), (1,3)}
Notification: Performance of Backend phase and start with SimCode phase: time 0.01379/13.47, allocations: 3.404 MB / 3.933 GB, free: 101.5 MB / 0.6828 GB
Notification: Performance of simCode: created initialization part: time 0.1205/13.59, allocations: 42.05 MB / 3.975 GB, free: 72.29 MB / 0.6828 GB
Notification: Performance of simCode: created event and clocks part: time 1.378e-05/13.59, allocations: 0 / 3.975 GB, free: 72.29 MB / 0.6828 GB
Notification: Performance of simCode: created simulation system equations: time 0.0752/13.67, allocations: 22.88 MB / 3.997 GB, free: 52.71 MB / 0.6828 GB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.05695/13.73, allocations: 8.181 MB / 4.005 GB, free: 45.34 MB / 0.6828 GB
Error: Error parsing unit kDa: Unit not found
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.5266/14.25, allocations: 92.48 MB / 4.095 GB, free: 122.3 MB / 0.6984 GB
Notification: Performance of simCode: some other stuff during SimCode phase: time 0.04347/14.3, allocations: 13.91 MB / 4.109 GB, free: 121 MB / 0.6984 GB
Notification: Performance of simCode: alias equations: time 0.05625/14.35, allocations: 12.03 MB / 4.121 GB, free: 120.5 MB / 0.6984 GB
Notification: Performance of simCode: all other stuff during SimCode phase: time 0.07041/14.42, allocations: 3.597 MB / 4.124 GB, free: 120.4 MB / 0.6984 GB
Notification: Performance of SimCode: time 2.685e-06/14.42, allocations: 0 / 4.124 GB, free: 120.4 MB / 0.6984 GB
Notification: Performance of Templates: time 2.29/16.71, allocations: 0.9452 GB / 5.069 GB, free: 156.4 MB / 0.7296 GB
"
[Timeout remaining time 643]
make -j1 -f Chemical_Chemical.Obsolete.Examples.Hemoglobin.Joels57.makefile [Timeout 660]
(rm -f Chemical_Chemical.Obsolete.Examples.Hemoglobin.Joels57.pipe ; mkfifo Chemical_Chemical.Obsolete.Examples.Hemoglobin.Joels57.pipe ; head -c 1048576 < Chemical_Chemical.Obsolete.Examples.Hemoglobin.Joels57.pipe >> ../files/Chemical_Chemical.Obsolete.Examples.Hemoglobin.Joels57.sim & ./Chemical_Chemical.Obsolete.Examples.Hemoglobin.Joels57 -abortSlowSimulation -alarm=240  -lv LOG_STATS > Chemical_Chemical.Obsolete.Examples.Hemoglobin.Joels57.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 42.10761279100552]