Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_Chemical.Obsolete.Examples.GasSolubility.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.0009234/0.0009234, allocations: 92.22 kB / 19.65 MB, free: 276 kB / 13.93 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001708/0.001708, allocations: 173 kB / 23.03 MB, free: 1.539 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9962/0.9962, allocations: 177.1 MB / 203.4 MB, free: 5.625 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo): time 0.08336/0.08336, allocations: 17.38 MB / 277.3 MB, free: 11.64 MB / 266.7 MB
"
[Timeout remaining time 180]
Using package Chemical with version 2.0.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Chemical.Obsolete.Examples.GasSolubility,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_Chemical.Obsolete.Examples.GasSolubility")
translateModel(Chemical.Obsolete.Examples.GasSolubility,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_Chemical.Obsolete.Examples.GasSolubility") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.263e-06/1.263e-06, allocations: 0 / 353.4 MB, free: 9.977 MB / 282.7 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 1.827e-05/1.953e-05, allocations: 6.25 kB / 353.4 MB, free: 9.969 MB / 282.7 MB
Notification: Performance of NFInst.instantiate(Chemical.Obsolete.Examples.GasSolubility): time 0.007691/0.007711, allocations: 10.21 MB / 363.6 MB, free: 15.71 MB / 298.7 MB
Notification: Performance of NFInst.instExpressions: time 0.02415/0.03186, allocations: 30.95 MB / 394.6 MB, free: 0.6406 MB / 314.7 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.001371/0.03323, allocations: 31.75 kB / 394.6 MB, free: 0.6094 MB / 314.7 MB
Notification: Performance of NFTyping.typeComponents: time 0.001259/0.03449, allocations: 0.6006 MB / 395.2 MB, free: 4 kB / 314.7 MB
Notification: Performance of NFTyping.typeBindings: time 0.005701/0.04019, allocations: 2.719 MB / 397.9 MB, free: 13.27 MB / 330.7 MB
Notification: Performance of NFTyping.typeClassSections: time 0.008445/0.04864, allocations: 4.111 MB / 402.1 MB, free: 9.129 MB / 330.7 MB
Notification: Performance of NFFlatten.flatten: time 0.003474/0.05211, allocations: 3.119 MB / 405.2 MB, free: 5.996 MB / 330.7 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.001752/0.05386, allocations: 1.414 MB / 406.6 MB, free: 4.539 MB / 330.7 MB
Notification: Performance of NFEvalConstants.evaluate: time 0.002387/0.05625, allocations: 2.059 MB / 408.6 MB, free: 2.477 MB / 330.7 MB
Notification: Performance of NFSimplifyModel.simplify: time 0.001733/0.05799, allocations: 1.333 MB / 410 MB, free: 1.141 MB / 330.7 MB
Notification: Performance of NFPackage.collectConstants: time 0.0005021/0.05849, allocations: 264 kB / 410.2 MB, free: 0.8828 MB / 330.7 MB
Notification: Performance of NFFlatten.collectFunctions: time 0.1631/0.2216, allocations: 3.209 MB / 413.4 MB, free: 24.32 MB / 330.7 MB
Notification: Performance of NFScalarize.scalarize: time 0.0007904/0.2223, allocations: 0.6225 MB / 414.1 MB, free: 24.32 MB / 330.7 MB
Notification: Performance of NFVerifyModel.verify: time 0.00268/0.225, allocations: 0.9744 MB / 415 MB, free: 24.32 MB / 330.7 MB
Notification: Performance of NFConvertDAE.convert: time 0.01723/0.2423, allocations: 5.962 MB / 421 MB, free: 23.97 MB / 330.7 MB
Notification: Performance of FrontEnd - DAE generated: time 6.402e-06/0.2423, allocations: 3.938 kB / 421 MB, free: 23.97 MB / 330.7 MB
Notification: Performance of FrontEnd: time 1.223e-06/0.2423, allocations: 0 / 421 MB, free: 23.97 MB / 330.7 MB
Notification: Performance of Transformations before backend: time 0.0001171/0.2424, allocations: 3.188 kB / 421 MB, free: 23.97 MB / 330.7 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 539
 * Number of variables: 539
Notification: Performance of Generate backend data structure: time 0.005276/0.2477, allocations: 3.269 MB / 424.3 MB, free: 22.45 MB / 330.7 MB
Notification: Performance of prepare preOptimizeDAE: time 4.405e-05/0.2477, allocations: 14 kB / 424.3 MB, free: 22.45 MB / 330.7 MB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.001904/0.2496, allocations: 0.9785 MB / 425.3 MB, free: 22.12 MB / 330.7 MB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.001326/0.2509, allocations: 1.104 MB / 426.4 MB, free: 21.79 MB / 330.7 MB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 8.293e-05/0.251, allocations: 158.6 kB / 426.5 MB, free: 21.78 MB / 330.7 MB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.0002347/0.2512, allocations: 220 kB / 426.7 MB, free: 21.78 MB / 330.7 MB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.002324/0.2536, allocations: 2.043 MB / 428.8 MB, free: 21.53 MB / 330.7 MB
Notification: Performance of preOpt findStateOrder (simulation): time 3.26e-05/0.2536, allocations: 4.953 kB / 428.8 MB, free: 21.53 MB / 330.7 MB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.0001498/0.2538, allocations: 88.91 kB / 428.9 MB, free: 21.53 MB / 330.7 MB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 3.176e-05/0.2538, allocations: 52.69 kB / 428.9 MB, free: 21.52 MB / 330.7 MB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.002531/0.2563, allocations: 2.253 MB / 431.2 MB, free: 21.48 MB / 330.7 MB
Warning: The model contains alias variables with redundant start and/or conflicting nominal values. It is recommended to resolve the conflicts, because otherwise the system could be hard to solve. To print the conflicting alias sets and the chosen candidates please use -d=aliasConflicts.
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.007119/0.2634, allocations: 6.28 MB / 437.5 MB, free: 19.35 MB / 330.7 MB
Notification: Performance of preOpt comSubExp (simulation): time 0.003325/0.2668, allocations: 3.577 MB / 441 MB, free: 18.55 MB / 330.7 MB
Notification: Performance of preOpt resolveLoops (simulation): time 0.0007228/0.2675, allocations: 0.6439 MB / 441.7 MB, free: 18.42 MB / 330.7 MB
Notification: Performance of preOpt evalFunc (simulation): time 0.006229/0.2737, allocations: 4.647 MB / 446.3 MB, free: 15.08 MB / 330.7 MB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 2.777e-05/0.2737, allocations: 47.36 kB / 446.4 MB, free: 15.02 MB / 330.7 MB
Notification: Performance of preOpt simplifyInStream (simulation): time 0.0002876/0.274, allocations: 182.2 kB / 446.6 MB, free: 14.85 MB / 330.7 MB
Notification: Performance of pre-optimization done (n=138): time 4.488e-06/0.274, allocations: 3.984 kB / 446.6 MB, free: 14.84 MB / 330.7 MB
Notification: Performance of matching and sorting (n=170): time 0.01221/0.2862, allocations: 5.373 MB / 451.9 MB, free: 9.473 MB / 330.7 MB
Notification: Performance of inlineWhenForInitialization (initialization): time 2.975e-05/0.2863, allocations: 73.41 kB / 452 MB, free: 9.387 MB / 330.7 MB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.000921/0.2872, allocations: 1.311 MB / 453.3 MB, free: 8.039 MB / 330.7 MB
Notification: Performance of collectPreVariables (initialization): time 6.999e-05/0.2873, allocations: 57.7 kB / 453.4 MB, free: 7.977 MB / 330.7 MB
Notification: Performance of collectInitialEqns (initialization): time 0.0003868/0.2877, allocations: 1.132 MB / 454.5 MB, free: 6.84 MB / 330.7 MB
Notification: Performance of collectInitialBindings (initialization): time 0.0002549/0.2879, allocations: 0.6092 MB / 455.1 MB, free: 6.238 MB / 330.7 MB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.0003657/0.2883, allocations: 479.2 kB / 455.6 MB, free: 5.762 MB / 330.7 MB
Notification: Performance of setup shared object (initialization): time 4.081e-05/0.2883, allocations: 477.4 kB / 456.1 MB, free: 5.293 MB / 330.7 MB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.0005384/0.2889, allocations: 440.7 kB / 456.5 MB, free: 4.859 MB / 330.7 MB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.0008258/0.2897, allocations: 1.553 MB / 458 MB, free: 2.82 MB / 330.7 MB
Notification: Performance of analyzeInitialSystem (initialization): time 0.001664/0.2913, allocations: 2.184 MB / 460.2 MB, free: 256 kB / 330.7 MB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 1.307e-05/0.2914, allocations: 8 kB / 460.2 MB, free: 248 kB / 330.7 MB
Notification: Performance of matching and sorting (n=317) (initialization): time 0.004232/0.2956, allocations: 2.478 MB / 462.7 MB, free: 13.91 MB / 346.7 MB
Notification: Performance of prepare postOptimizeDAE: time 3.124e-05/0.2956, allocations: 20.75 kB / 462.7 MB, free: 13.89 MB / 346.7 MB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 3.497e-05/0.2957, allocations: 28 kB / 462.8 MB, free: 13.87 MB / 346.7 MB
Notification: Performance of postOpt tearingSystem (initialization): time 0.002652/0.2983, allocations: 0.6775 MB / 463.4 MB, free: 13.18 MB / 346.7 MB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.001115/0.2994, allocations: 0.5887 MB / 464 MB, free: 12.62 MB / 346.7 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 0.007576/0.307, allocations: 8.726 MB / 472.7 MB, free: 3.48 MB / 346.7 MB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.001259/0.3083, allocations: 87.97 kB / 472.8 MB, free: 3.395 MB / 346.7 MB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.0001857/0.3084, allocations: 140 kB / 473 MB, free: 3.258 MB / 346.7 MB
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 117
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (305):
 * Single equations (assignments): 301
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 4
 * Mixed (continuous/discrete) equation systems: 0
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 2 systems
   {(1,3,100.0%), (1,3,100.0%)}
 * Non-linear torn systems (#iteration vars, #inner vars): 2 systems
   {(1,3), (1,3)}
Notification: Performance of prepare postOptimizeDAE: time 0.0006847/0.3091, allocations: 319.4 kB / 473.3 MB, free: 2.973 MB / 346.7 MB
Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0003113/0.3094, allocations: 218.9 kB / 473.5 MB, free: 2.758 MB / 346.7 MB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.003762/0.3132, allocations: 2.036 MB / 475.5 MB, free: 0.7227 MB / 346.7 MB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 1.415e-05/0.3132, allocations: 20 kB / 475.5 MB, free: 0.7031 MB / 346.7 MB
Notification: Performance of postOpt constantLinearSystem (simulation): time 6.102e-06/0.3132, allocations: 0 / 475.5 MB, free: 0.7031 MB / 346.7 MB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 1.503e-05/0.3132, allocations: 15.89 kB / 475.6 MB, free: 0.6875 MB / 346.7 MB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.001731/0.315, allocations: 1.324 MB / 476.9 MB, free: 15.34 MB / 362.7 MB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 1.168e-05/0.315, allocations: 7.562 kB / 476.9 MB, free: 15.34 MB / 362.7 MB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0006983/0.3157, allocations: 345.5 kB / 477.2 MB, free: 15.02 MB / 362.7 MB
Notification: Performance of postOpt tearingSystem (simulation): time 0.002525/0.3182, allocations: 0.6467 MB / 477.9 MB, free: 14.35 MB / 362.7 MB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 0.0001374/0.3183, allocations: 59.97 kB / 477.9 MB, free: 14.29 MB / 362.7 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 0.005429/0.3238, allocations: 8.553 MB / 486.5 MB, free: 5.301 MB / 362.7 MB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 3.085e-06/0.3238, allocations: 4 kB / 486.5 MB, free: 5.297 MB / 362.7 MB
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.003895/0.3277, allocations: 2.434 MB / 488.9 MB, free: 2.809 MB / 362.7 MB
Notification: Performance of postOpt removeConstants (simulation): time 0.000246/0.3279, allocations: 154.8 kB / 489.1 MB, free: 2.656 MB / 362.7 MB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0001396/0.3281, allocations: 36 kB / 489.1 MB, free: 2.621 MB / 362.7 MB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.000558/0.3286, allocations: 39.98 kB / 489.2 MB, free: 2.582 MB / 362.7 MB
Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0004624/0.3291, allocations: 157 kB / 489.3 MB, free: 2.43 MB / 362.7 MB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 0.0001111/0.3292, allocations: 68.62 kB / 489.4 MB, free: 2.363 MB / 362.7 MB
Notification: Performance of sorting global known variables: time 0.0009549/0.3301, allocations: 0.7553 MB / 490.1 MB, free: 1.605 MB / 362.7 MB
Notification: Performance of sort global known variables: time 1.7e-07/0.3301, allocations: 0 / 490.1 MB, free: 1.605 MB / 362.7 MB
Notification: Performance of remove unused functions: time 0.004186/0.3343, allocations: 1.321 MB / 491.4 MB, free: 288 kB / 362.7 MB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 9
 * Number of states: 9 (blood_plasma.temperature,red_cells.temperature,CO2_unbound_plasma.logn,O2_unbound_plasma.logn,CO2_unbound_erythrocyte.logn,O2_unbound_erythrocyte_NIST.logn,water_plasma.logn,water.logn,water_plasma1.logn)
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (183):
 * Single equations (assignments): 179
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 4
 * Mixed (continuous/discrete) equation systems: 0
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 2 systems
   {(1,3,100.0%), (1,3,100.0%)}
 * Non-linear torn systems (#iteration vars, #inner vars): 2 systems
   {(1,3), (1,3)}
Notification: Performance of Backend phase and start with SimCode phase: time 0.003477/0.3378, allocations: 1.476 MB / 492.9 MB, free: 14.99 MB / 378.7 MB
Notification: Performance of simCode: created initialization part: time 0.003615/0.3414, allocations: 2.18 MB / 495.1 MB, free: 12.83 MB / 378.7 MB
Notification: Performance of simCode: created event and clocks part: time 7.123e-06/0.3414, allocations: 0 / 495.1 MB, free: 12.83 MB / 378.7 MB
Notification: Performance of simCode: created simulation system equations: time 0.001454/0.3429, allocations: 1.406 MB / 496.5 MB, free: 11.39 MB / 378.7 MB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.001443/0.3443, allocations: 406.9 kB / 496.9 MB, free: 11 MB / 378.7 MB
Error: Error parsing unit kDa: Unit not found
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.005635/0.35, allocations: 3.355 MB / 0.4885 GB, free: 7.582 MB / 378.7 MB
Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0003278/0.3503, allocations: 342.1 kB / 0.4889 GB, free: 7.227 MB / 378.7 MB
Notification: Performance of simCode: alias equations: time 0.001322/0.3516, allocations: 426.2 kB / 0.4893 GB, free: 6.812 MB / 378.7 MB
Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0009321/0.3525, allocations: 287.8 kB / 0.4895 GB, free: 6.531 MB / 378.7 MB
Notification: Performance of SimCode: time 2.434e-06/0.3525, allocations: 0 / 0.4895 GB, free: 6.531 MB / 378.7 MB
Notification: Performance of Templates: time 0.0723/0.4248, allocations: 51.49 MB / 0.5398 GB, free: 3.582 MB / 426.7 MB
"
[Timeout remaining time 660]
make -j1 -f Chemical_Chemical.Obsolete.Examples.GasSolubility.makefile [Timeout 660]
(rm -f Chemical_Chemical.Obsolete.Examples.GasSolubility.pipe ; mkfifo Chemical_Chemical.Obsolete.Examples.GasSolubility.pipe ; head -c 1048576 < Chemical_Chemical.Obsolete.Examples.GasSolubility.pipe >> ../files/Chemical_Chemical.Obsolete.Examples.GasSolubility.sim & ./Chemical_Chemical.Obsolete.Examples.GasSolubility -abortSlowSimulation -alarm=240  -lv LOG_STATS > Chemical_Chemical.Obsolete.Examples.GasSolubility.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 4.566177353262901]