Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001606/0.001606, allocations: 93.06 kB / 19.65 MB, free: 276 kB / 13.93 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001629/0.001629, allocations: 169 kB / 23.02 MB, free: 1.543 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9611/0.9611, allocations: 177.1 MB / 203.4 MB, free: 5.648 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo): time 0.08781/0.08781, allocations: 17.38 MB / 277.3 MB, free: 11.66 MB / 266.7 MB
"
[Timeout remaining time 180]
Using package Chemical with version 2.0.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG")
translateModel(Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.674e-06/1.674e-06, allocations: 0 / 353.4 MB, free: 9.992 MB / 282.7 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 2.42e-05/2.587e-05, allocations: 2.312 kB / 353.4 MB, free: 9.988 MB / 282.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/Obsolete.mo:12638:6-12638:65:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/Obsolete.mo:12638:6-12638:65:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"system\" component but
an inner \"system\" component is not defined.
For simulation drag Modelica.Fluid.System into your model
to specify system properties.
Notification: Performance of NFInst.instantiate(Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG): time 0.02649/0.02652, allocations: 26.91 MB / 380.3 MB, free: 15.21 MB / 314.7 MB
Notification: Performance of NFInst.instExpressions: time 0.006021/0.03254, allocations: 6.36 MB / 386.7 MB, free: 8.832 MB / 314.7 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.0002826/0.03282, allocations: 11.88 kB / 386.7 MB, free: 8.82 MB / 314.7 MB
Notification: Performance of NFTyping.typeComponents: time 0.0004727/0.0333, allocations: 146.9 kB / 386.9 MB, free: 8.676 MB / 314.7 MB
Notification: Performance of NFTyping.typeBindings: time 0.0006608/0.03396, allocations: 269.7 kB / 387.1 MB, free: 8.41 MB / 314.7 MB
Notification: Performance of NFTyping.typeClassSections: time 0.001978/0.03593, allocations: 1.013 MB / 388.1 MB, free: 7.391 MB / 314.7 MB
Notification: Performance of NFFlatten.flatten: time 0.000634/0.03657, allocations: 0.5213 MB / 388.7 MB, free: 6.867 MB / 314.7 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.0003165/0.03689, allocations: 173.1 kB / 388.8 MB, free: 6.695 MB / 314.7 MB
Notification: Performance of NFEvalConstants.evaluate: time 0.0003035/0.03719, allocations: 319.3 kB / 389.1 MB, free: 6.383 MB / 314.7 MB
Notification: Performance of NFSimplifyModel.simplify: time 0.0003327/0.03752, allocations: 235.4 kB / 389.4 MB, free: 6.152 MB / 314.7 MB
Notification: Performance of NFPackage.collectConstants: time 5.243e-05/0.03757, allocations: 28 kB / 389.4 MB, free: 6.125 MB / 314.7 MB
Notification: Performance of NFFlatten.collectFunctions: time 0.0008431/0.03842, allocations: 0.5185 MB / 389.9 MB, free: 5.605 MB / 314.7 MB
Notification: Performance of NFScalarize.scalarize: time 0.0001184/0.03854, allocations: 103.6 kB / 390 MB, free: 5.504 MB / 314.7 MB
Notification: Performance of NFVerifyModel.verify: time 0.0001177/0.03865, allocations: 139.6 kB / 390.2 MB, free: 5.367 MB / 314.7 MB
Notification: Performance of NFConvertDAE.convert: time 0.001126/0.03978, allocations: 1.039 MB / 391.2 MB, free: 4.324 MB / 314.7 MB
Notification: Performance of FrontEnd - DAE generated: time 4.438e-06/0.03978, allocations: 0 / 391.2 MB, free: 4.324 MB / 314.7 MB
Notification: Performance of FrontEnd: time 2.424e-06/0.03979, allocations: 4 kB / 391.2 MB, free: 4.32 MB / 314.7 MB
Notification: Performance of Transformations before backend: time 8.045e-06/0.03979, allocations: 0 / 391.2 MB, free: 4.32 MB / 314.7 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 65
 * Number of variables: 65
Notification: Performance of Generate backend data structure: time 0.0008943/0.04069, allocations: 0.8257 MB / 392 MB, free: 3.453 MB / 314.7 MB
Notification: Performance of prepare preOptimizeDAE: time 4.129e-05/0.04073, allocations: 12.03 kB / 392 MB, free: 3.441 MB / 314.7 MB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0004286/0.04116, allocations: 183.7 kB / 392.2 MB, free: 3.262 MB / 314.7 MB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.0004186/0.04158, allocations: 348.2 kB / 392.6 MB, free: 2.895 MB / 314.7 MB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 1.749e-05/0.04159, allocations: 17.03 kB / 392.6 MB, free: 2.879 MB / 314.7 MB
Notification: Performance of preOpt expandDerOperator (simulation): time 3.751e-05/0.04163, allocations: 28.38 kB / 392.6 MB, free: 2.852 MB / 314.7 MB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.0004392/0.04207, allocations: 396.3 kB / 393 MB, free: 2.418 MB / 314.7 MB
Notification: Performance of preOpt findStateOrder (simulation): time 1.266e-05/0.04208, allocations: 7.875 kB / 393 MB, free: 2.41 MB / 314.7 MB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 2.909e-05/0.04211, allocations: 12 kB / 393 MB, free: 2.398 MB / 314.7 MB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 1.179e-05/0.04212, allocations: 8 kB / 393 MB, free: 2.391 MB / 314.7 MB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0004773/0.0426, allocations: 422.5 kB / 393.4 MB, free: 1.973 MB / 314.7 MB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.001508/0.04411, allocations: 2.016 MB / 395.4 MB, free: 15.88 MB / 330.7 MB
Notification: Performance of preOpt comSubExp (simulation): time 0.0001957/0.04431, allocations: 106 kB / 395.5 MB, free: 15.76 MB / 330.7 MB
Notification: Performance of preOpt resolveLoops (simulation): time 7.875e-05/0.04438, allocations: 51.66 kB / 395.6 MB, free: 15.71 MB / 330.7 MB
Notification: Performance of preOpt evalFunc (simulation): time 0.001084/0.04547, allocations: 1.003 MB / 396.6 MB, free: 14.68 MB / 330.7 MB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 2.148e-05/0.04549, allocations: 33.39 kB / 396.6 MB, free: 14.64 MB / 330.7 MB
Notification: Performance of pre-optimization done (n=9): time 1.493e-06/0.04549, allocations: 0 / 396.6 MB, free: 14.64 MB / 330.7 MB
Notification: Performance of matching and sorting (n=9): time 0.0002553/0.04575, allocations: 133.7 kB / 396.8 MB, free: 14.5 MB / 330.7 MB
Notification: Performance of inlineWhenForInitialization (initialization): time 3.056e-05/0.04578, allocations: 55.41 kB / 396.8 MB, free: 14.44 MB / 330.7 MB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.000297/0.04607, allocations: 438.5 kB / 397.2 MB, free: 13.99 MB / 330.7 MB
Notification: Performance of collectPreVariables (initialization): time 1.292e-05/0.04609, allocations: 29.7 kB / 397.3 MB, free: 13.96 MB / 330.7 MB
Notification: Performance of collectInitialEqns (initialization): time 0.000156/0.04624, allocations: 326.3 kB / 397.6 MB, free: 13.63 MB / 330.7 MB
Notification: Performance of collectInitialBindings (initialization): time 2.948e-05/0.04627, allocations: 39.73 kB / 397.6 MB, free: 13.59 MB / 330.7 MB
Notification: Performance of simplifyInitialFunctions (initialization): time 7.785e-05/0.04635, allocations: 87.25 kB / 397.7 MB, free: 13.5 MB / 330.7 MB
Notification: Performance of setup shared object (initialization): time 0.0001511/0.0465, allocations: 0.5197 MB / 398.2 MB, free: 12.97 MB / 330.7 MB
Notification: Performance of preBalanceInitialSystem (initialization): time 5.677e-05/0.04656, allocations: 31.98 kB / 398.3 MB, free: 12.94 MB / 330.7 MB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.0002042/0.04676, allocations: 345 kB / 398.6 MB, free: 12.45 MB / 330.7 MB
Notification: Performance of analyzeInitialSystem (initialization): time 0.0003323/0.04709, allocations: 416.6 kB / 399 MB, free: 11.9 MB / 330.7 MB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 4.238e-06/0.0471, allocations: 4 kB / 399 MB, free: 11.89 MB / 330.7 MB
Notification: Performance of matching and sorting (n=38) (initialization): time 0.0003953/0.04749, allocations: 325.5 kB / 399.3 MB, free: 11.57 MB / 330.7 MB
Notification: Performance of prepare postOptimizeDAE: time 1.812e-05/0.04751, allocations: 8 kB / 399.3 MB, free: 11.56 MB / 330.7 MB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 7.534e-06/0.04752, allocations: 12.12 kB / 399.3 MB, free: 11.55 MB / 330.7 MB
Notification: Performance of postOpt tearingSystem (initialization): time 1.872e-05/0.04754, allocations: 12 kB / 399.4 MB, free: 11.54 MB / 330.7 MB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0001644/0.0477, allocations: 87.89 kB / 399.4 MB, free: 11.45 MB / 330.7 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 1.214e-05/0.04772, allocations: 15.92 kB / 399.5 MB, free: 11.44 MB / 330.7 MB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0001267/0.04784, allocations: 39.73 kB / 399.5 MB, free: 11.4 MB / 330.7 MB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 3.672e-05/0.04788, allocations: 32 kB / 399.5 MB, free: 11.37 MB / 330.7 MB
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 35
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (38):
 * Single equations (assignments): 38
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of prepare postOptimizeDAE: time 0.0001114/0.04799, allocations: 192.2 kB / 399.7 MB, free: 11.17 MB / 330.7 MB
Notification: Performance of postOpt lateInlineFunction (simulation): time 4.109e-05/0.04803, allocations: 35.77 kB / 399.8 MB, free: 11.13 MB / 330.7 MB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.000309/0.04834, allocations: 254.1 kB / 400 MB, free: 10.84 MB / 330.7 MB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 3.327e-06/0.04834, allocations: 4 kB / 400 MB, free: 10.84 MB / 330.7 MB
Notification: Performance of postOpt constantLinearSystem (simulation): time 3.958e-06/0.04835, allocations: 0 / 400 MB, free: 10.84 MB / 330.7 MB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 3.347e-06/0.04835, allocations: 0 / 400 MB, free: 10.84 MB / 330.7 MB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.00035/0.0487, allocations: 0.5353 MB / 400.5 MB, free: 10.26 MB / 330.7 MB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 1.793e-06/0.0487, allocations: 0 / 400.5 MB, free: 10.26 MB / 330.7 MB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 9.608e-06/0.04871, allocations: 12.05 kB / 400.6 MB, free: 10.25 MB / 330.7 MB
Notification: Performance of postOpt tearingSystem (simulation): time 3.046e-06/0.04872, allocations: 0 / 400.6 MB, free: 10.25 MB / 330.7 MB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 6.181e-06/0.04872, allocations: 0 / 400.6 MB, free: 10.25 MB / 330.7 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 2.234e-06/0.04872, allocations: 0 / 400.6 MB, free: 10.25 MB / 330.7 MB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 1.482e-06/0.04873, allocations: 0 / 400.6 MB, free: 10.25 MB / 330.7 MB
Notification: Performance of postOpt symbolicJacobian (simulation): time 9.074e-05/0.04882, allocations: 112.1 kB / 400.7 MB, free: 10.11 MB / 330.7 MB
Notification: Performance of postOpt removeConstants (simulation): time 3.165e-05/0.04885, allocations: 31.83 kB / 400.7 MB, free: 10.08 MB / 330.7 MB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 3.074e-05/0.04888, allocations: 3.953 kB / 400.7 MB, free: 10.08 MB / 330.7 MB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 3.807e-05/0.04892, allocations: 0 / 400.7 MB, free: 10.08 MB / 330.7 MB
Notification: Performance of postOpt findZeroCrossings (simulation): time 1.641e-05/0.04893, allocations: 0 / 400.7 MB, free: 10.08 MB / 330.7 MB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 5.69e-06/0.04894, allocations: 7.938 kB / 400.7 MB, free: 10.07 MB / 330.7 MB
Notification: Performance of sorting global known variables: time 0.0002097/0.04915, allocations: 307.1 kB / 401 MB, free: 9.77 MB / 330.7 MB
Notification: Performance of sort global known variables: time 6e-08/0.04915, allocations: 0 / 401 MB, free: 9.77 MB / 330.7 MB
Notification: Performance of remove unused functions: time 0.0004025/0.04955, allocations: 187.3 kB / 401.2 MB, free: 9.586 MB / 330.7 MB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 1
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (1):
 * Single equations (assignments): 1
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of Backend phase and start with SimCode phase: time 0.0004031/0.04995, allocations: 303.2 kB / 401.5 MB, free: 9.277 MB / 330.7 MB
Notification: Performance of simCode: created initialization part: time 0.0002177/0.05017, allocations: 137.8 kB / 401.6 MB, free: 9.141 MB / 330.7 MB
Notification: Performance of simCode: created event and clocks part: time 2.004e-06/0.05017, allocations: 3.938 kB / 401.6 MB, free: 9.137 MB / 330.7 MB
Notification: Performance of simCode: created simulation system equations: time 8.486e-06/0.05018, allocations: 11.62 kB / 401.6 MB, free: 9.121 MB / 330.7 MB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0003127/0.05049, allocations: 88.66 kB / 401.7 MB, free: 9.039 MB / 330.7 MB
Error: Error parsing unit kDa: Unit not found
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.001073/0.05157, allocations: 0.534 MB / 402.3 MB, free: 8.477 MB / 330.7 MB
Notification: Performance of simCode: some other stuff during SimCode phase: time 5.619e-05/0.05162, allocations: 96.55 kB / 402.3 MB, free: 8.363 MB / 330.7 MB
Notification: Performance of simCode: alias equations: time 0.0001711/0.0518, allocations: 86.47 kB / 402.4 MB, free: 8.281 MB / 330.7 MB
Notification: Performance of simCode: all other stuff during SimCode phase: time 6.185e-05/0.05186, allocations: 44.42 kB / 402.5 MB, free: 8.238 MB / 330.7 MB
Notification: Performance of SimCode: time 7.42e-07/0.05186, allocations: 0 / 402.5 MB, free: 8.238 MB / 330.7 MB
Notification: Performance of Templates: time 0.00914/0.061, allocations: 7.121 MB / 409.6 MB, free: 1.184 MB / 330.7 MB
"
[Timeout remaining time 660]
make -j1 -f Chemical_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG.makefile [Timeout 660]
(rm -f Chemical_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG.pipe ; mkfifo Chemical_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG.pipe ; head -c 1048576 < Chemical_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG.pipe >> ../files/Chemical_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG.sim & ./Chemical_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG -abortSlowSimulation -alarm=240  -lv LOG_STATS > Chemical_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 3.0852320292033255]