Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001035/0.001035, allocations: 92.22 kB / 19.65 MB, free: 276 kB / 13.93 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001063/0.001063, allocations: 173 kB / 23.02 MB, free: 1.547 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.038/1.038, allocations: 177.1 MB / 203.4 MB, free: 5.633 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/package.mo): time 0.08196/0.08196, allocations: 12.75 MB / 272.7 MB, free: 280 kB / 250.7 MB
"
[Timeout remaining time 180]
Using package Bodylight with version 1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC,tolerance=1e-14,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC")
translateModel(Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC,tolerance=1e-14,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.754e-06/1.754e-06, allocations: 0 / 346.7 MB, free: 2.277 MB / 314.7 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 2.169e-05/2.344e-05, allocations: 6.312 kB / 346.7 MB, free: 2.27 MB / 314.7 MB
Notification: Performance of NFInst.instantiate(Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC): time 0.01094/0.01096, allocations: 10.59 MB / 357.3 MB, free: 7.641 MB / 330.7 MB
Notification: Performance of NFInst.instExpressions: time 0.01396/0.02492, allocations: 11.52 MB / 368.8 MB, free: 12.07 MB / 346.7 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.001111/0.02603, allocations: 102.9 kB / 368.9 MB, free: 11.97 MB / 346.7 MB
Notification: Performance of NFTyping.typeComponents: time 0.00068/0.02671, allocations: 404 kB / 369.3 MB, free: 11.57 MB / 346.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T0.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T0.Utilities.readReal' contains a call to impure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T0.Utilities.UnitConversions.findUnit'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T1.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T1.Utilities.readReal' contains a call to impure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T1.Utilities.UnitConversions.findUnit'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R1.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R1.Utilities.readReal' contains a call to impure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R1.Utilities.UnitConversions.findUnit'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T2.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T2.Utilities.readReal' contains a call to impure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T2.Utilities.UnitConversions.findUnit'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R2.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R2.Utilities.readReal' contains a call to impure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R2.Utilities.UnitConversions.findUnit'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T3.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T3.Utilities.readReal' contains a call to impure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T3.Utilities.UnitConversions.findUnit'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R3.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R3.Utilities.readReal' contains a call to impure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R3.Utilities.UnitConversions.findUnit'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T4.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T4.Utilities.readReal' contains a call to impure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T4.Utilities.UnitConversions.findUnit'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R4.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R4.Utilities.readReal' contains a call to impure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R4.Utilities.UnitConversions.findUnit'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R0.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R0.Utilities.readReal' contains a call to impure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R0.Utilities.UnitConversions.findUnit'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.oxygen_unbound.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.oxygen_unbound.Utilities.readReal' contains a call to impure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.oxygen_unbound.Utilities.UnitConversions.findUnit'.
Notification: Performance of NFTyping.typeBindings: time 0.005127/0.03184, allocations: 2.197 MB / 371.5 MB, free: 9.367 MB / 346.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T0.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T0.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T1.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T1.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R1.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R1.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T2.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T2.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R2.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R2.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T3.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T3.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R3.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R3.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T4.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T4.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R4.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R4.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R0.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R0.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.oxygen_unbound.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.oxygen_unbound.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
Notification: Performance of NFTyping.typeClassSections: time 0.004282/0.03612, allocations: 2.002 MB / 373.5 MB, free: 7.359 MB / 346.7 MB
Notification: Performance of NFFlatten.flatten: time 0.002826/0.03895, allocations: 2.872 MB / 376.4 MB, free: 4.48 MB / 346.7 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.0007073/0.03966, allocations: 384.1 kB / 376.8 MB, free: 4.074 MB / 346.7 MB
Notification: Performance of NFEvalConstants.evaluate: time 0.001835/0.04149, allocations: 1.368 MB / 378.1 MB, free: 2.703 MB / 346.7 MB
Notification: Performance of NFSimplifyModel.simplify: time 0.001809/0.0433, allocations: 1.247 MB / 379.4 MB, free: 1.453 MB / 346.7 MB
Notification: Performance of NFPackage.collectConstants: time 0.0003359/0.04364, allocations: 144 kB / 379.5 MB, free: 1.312 MB / 346.7 MB
Notification: Performance of NFFlatten.collectFunctions: time 0.0003253/0.04396, allocations: 156 kB / 379.7 MB, free: 1.16 MB / 346.7 MB
Notification: Performance of NFScalarize.scalarize: time 0.0003756/0.04434, allocations: 0.5526 MB / 380.2 MB, free: 0.6055 MB / 346.7 MB
Notification: Performance of NFVerifyModel.verify: time 0.0006144/0.04495, allocations: 0.709 MB / 380.9 MB, free: 15.89 MB / 362.7 MB
Notification: Performance of NFConvertDAE.convert: time 0.00157/0.04652, allocations: 1.876 MB / 382.8 MB, free: 14.01 MB / 362.7 MB
Notification: Performance of FrontEnd - DAE generated: time 3.717e-06/0.04652, allocations: 4 kB / 382.8 MB, free: 14.01 MB / 362.7 MB
Notification: Performance of FrontEnd: time 1.122e-06/0.04653, allocations: 0 / 382.8 MB, free: 14.01 MB / 362.7 MB
Notification: Performance of Transformations before backend: time 4.22e-05/0.04657, allocations: 0 / 382.8 MB, free: 14.01 MB / 362.7 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 287
 * Number of variables: 287
Notification: Performance of Generate backend data structure: time 0.003219/0.04979, allocations: 2.684 MB / 385.5 MB, free: 11.27 MB / 362.7 MB
Notification: Performance of prepare preOptimizeDAE: time 4.459e-05/0.04983, allocations: 15.98 kB / 385.5 MB, free: 11.26 MB / 362.7 MB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0007847/0.05062, allocations: 431.3 kB / 385.9 MB, free: 10.84 MB / 362.7 MB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.001771/0.05239, allocations: 1.327 MB / 387.3 MB, free: 9.469 MB / 362.7 MB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 5.404e-05/0.05244, allocations: 90.64 kB / 387.4 MB, free: 9.379 MB / 362.7 MB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.0001194/0.05256, allocations: 112.4 kB / 387.5 MB, free: 9.27 MB / 362.7 MB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.001203/0.05376, allocations: 0.8672 MB / 388.3 MB, free: 8.355 MB / 362.7 MB
Notification: Performance of preOpt findStateOrder (simulation): time 2.044e-05/0.05378, allocations: 7.938 kB / 388.3 MB, free: 8.348 MB / 362.7 MB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 7.029e-05/0.05385, allocations: 44 kB / 388.4 MB, free: 8.305 MB / 362.7 MB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 2.457e-05/0.05388, allocations: 31.94 kB / 388.4 MB, free: 8.273 MB / 362.7 MB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0008074/0.05469, allocations: 473.1 kB / 388.9 MB, free: 7.801 MB / 362.7 MB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.004381/0.05907, allocations: 3.193 MB / 392.1 MB, free: 4.543 MB / 362.7 MB
Notification: Performance of preOpt comSubExp (simulation): time 0.0006247/0.05969, allocations: 466.2 kB / 392.5 MB, free: 4.062 MB / 362.7 MB
Notification: Performance of preOpt resolveLoops (simulation): time 0.0003406/0.06003, allocations: 261.2 kB / 392.8 MB, free: 3.801 MB / 362.7 MB
Notification: Performance of preOpt evalFunc (simulation): time 5.551e-05/0.06009, allocations: 20.94 kB / 392.8 MB, free: 3.781 MB / 362.7 MB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 3.154e-05/0.06012, allocations: 46.39 kB / 392.8 MB, free: 3.727 MB / 362.7 MB
Notification: Performance of pre-optimization done (n=98): time 3.105e-06/0.06012, allocations: 0 / 392.8 MB, free: 3.727 MB / 362.7 MB
Notification: Performance of matching and sorting (n=161): time 0.02343/0.08356, allocations: 8.17 MB / 401 MB, free: 11.52 MB / 378.7 MB
Notification: Performance of inlineWhenForInitialization (initialization): time 4.63e-05/0.0836, allocations: 94.42 kB / 401.1 MB, free: 11.41 MB / 378.7 MB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.001303/0.08491, allocations: 1.534 MB / 402.6 MB, free: 9.828 MB / 378.7 MB
Notification: Performance of collectPreVariables (initialization): time 9.243e-05/0.085, allocations: 57.7 kB / 402.7 MB, free: 9.766 MB / 378.7 MB
Notification: Performance of collectInitialEqns (initialization): time 0.0005291/0.08553, allocations: 0.9586 MB / 403.7 MB, free: 8.793 MB / 378.7 MB
Notification: Performance of collectInitialBindings (initialization): time 0.0003514/0.08588, allocations: 0.5733 MB / 404.2 MB, free: 8.215 MB / 378.7 MB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.0003974/0.08628, allocations: 349 kB / 404.6 MB, free: 7.867 MB / 378.7 MB
Notification: Performance of setup shared object (initialization): time 0.0001056/0.08638, allocations: 480.7 kB / 405 MB, free: 7.395 MB / 378.7 MB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.0005864/0.08697, allocations: 319.8 kB / 405.4 MB, free: 7.082 MB / 378.7 MB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.000824/0.08779, allocations: 0.8666 MB / 406.2 MB, free: 5.996 MB / 378.7 MB
Notification: Performance of analyzeInitialSystem (initialization): time 0.001585/0.08938, allocations: 1.363 MB / 407.6 MB, free: 4.418 MB / 378.7 MB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 8.546e-06/0.08939, allocations: 8 kB / 407.6 MB, free: 4.41 MB / 378.7 MB
Notification: Performance of matching and sorting (n=236) (initialization): time 0.008351/0.09774, allocations: 3.212 MB / 410.8 MB, free: 1.176 MB / 378.7 MB
Notification: Performance of prepare postOptimizeDAE: time 2.641e-05/0.09776, allocations: 8 kB / 410.8 MB, free: 1.168 MB / 378.7 MB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 2.017e-05/0.09778, allocations: 15.98 kB / 410.8 MB, free: 1.152 MB / 378.7 MB
Notification: Performance of postOpt tearingSystem (initialization): time 0.01062/0.1084, allocations: 3.092 MB / 413.9 MB, free: 14.05 MB / 394.7 MB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0005025/0.1089, allocations: 239.6 kB / 414.2 MB, free: 13.81 MB / 394.7 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 0.01575/0.1247, allocations: 11.05 MB / 425.2 MB, free: 2.527 MB / 394.7 MB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0009307/0.1256, allocations: 91.91 kB / 425.3 MB, free: 2.438 MB / 394.7 MB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.0001062/0.1257, allocations: 83.91 kB / 425.4 MB, free: 2.355 MB / 394.7 MB
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 52
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (120):
 * Single equations (assignments): 118
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 2
 * Mixed (continuous/discrete) equation systems: 0
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 1 system
   {(3,56,100.0%)}
 * Non-linear torn systems (#iteration vars, #inner vars): 1 system
   {(10,49)}
Notification: Performance of prepare postOptimizeDAE: time 0.0003992/0.1261, allocations: 252.2 kB / 425.6 MB, free: 2.098 MB / 394.7 MB
Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0002874/0.1264, allocations: 270.5 kB / 425.9 MB, free: 1.832 MB / 394.7 MB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0002799/0.1267, allocations: 329.8 kB / 426.2 MB, free: 1.508 MB / 394.7 MB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 8.265e-06/0.1267, allocations: 16.05 kB / 426.2 MB, free: 1.492 MB / 394.7 MB
Notification: Performance of postOpt constantLinearSystem (simulation): time 3.89e-05/0.1267, allocations: 15.98 kB / 426.2 MB, free: 1.477 MB / 394.7 MB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 9.738e-06/0.1267, allocations: 7.969 kB / 426.2 MB, free: 1.469 MB / 394.7 MB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.001392/0.1281, allocations: 1.178 MB / 427.4 MB, free: 256 kB / 394.7 MB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 8.335e-06/0.1281, allocations: 0 / 427.4 MB, free: 256 kB / 394.7 MB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0002501/0.1284, allocations: 99.89 kB / 427.5 MB, free: 156 kB / 394.7 MB
Notification: Performance of postOpt tearingSystem (simulation): time 0.01083/0.1392, allocations: 2.921 MB / 430.4 MB, free: 13.22 MB / 410.7 MB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 0.0001237/0.1393, allocations: 31.92 kB / 430.5 MB, free: 13.19 MB / 410.7 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 0.01575/0.1551, allocations: 10.96 MB / 441.4 MB, free: 1.969 MB / 410.7 MB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 3.978e-06/0.1551, allocations: 7.938 kB / 441.4 MB, free: 1.961 MB / 410.7 MB
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.1756/0.3306, allocations: 3.443 MB / 444.9 MB, free: 120.5 MB / 410.7 MB
Notification: Performance of postOpt removeConstants (simulation): time 0.00108/0.3317, allocations: 430 kB / 445.3 MB, free: 120.5 MB / 410.7 MB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0002026/0.3319, allocations: 29.5 kB / 445.3 MB, free: 120.5 MB / 410.7 MB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0006687/0.3326, allocations: 61.11 kB / 445.4 MB, free: 120.5 MB / 410.7 MB
Notification: Performance of postOpt findZeroCrossings (simulation): time 0.000658/0.3332, allocations: 155.5 kB / 445.5 MB, free: 120.5 MB / 410.7 MB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 7.097e-05/0.3333, allocations: 35.56 kB / 445.6 MB, free: 120.5 MB / 410.7 MB
Notification: Performance of sorting global known variables: time 0.0008159/0.3341, allocations: 0.9088 MB / 446.5 MB, free: 120.3 MB / 410.7 MB
Notification: Performance of sort global known variables: time 2e-07/0.3341, allocations: 0 / 446.5 MB, free: 120.3 MB / 410.7 MB
Notification: Performance of remove unused functions: time 0.001706/0.3358, allocations: 0.9187 MB / 447.4 MB, free: 120.3 MB / 410.7 MB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 2
 * Number of states: 1 (hemoglobinConservationLaw.state[1])
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (45):
 * Single equations (assignments): 43
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 2
 * Mixed (continuous/discrete) equation systems: 0
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 1 system
   {(6,53,86.1%)}
 * Non-linear torn systems (#iteration vars, #inner vars): 1 system
   {(10,49)}
Notification: Performance of Backend phase and start with SimCode phase: time 0.0002271/0.3361, allocations: 126.3 kB / 447.5 MB, free: 120.3 MB / 410.7 MB
Notification: Performance of simCode: created initialization part: time 0.004061/0.3401, allocations: 2.451 MB / 450 MB, free: 119.8 MB / 410.7 MB
Notification: Performance of simCode: created event and clocks part: time 2.535e-06/0.3401, allocations: 0 / 450 MB, free: 119.8 MB / 410.7 MB
Notification: Performance of simCode: created simulation system equations: time 0.003018/0.3431, allocations: 1.965 MB / 451.9 MB, free: 119.3 MB / 410.7 MB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.001024/0.3442, allocations: 345.4 kB / 452.3 MB, free: 119.3 MB / 410.7 MB
Error: Error parsing unit kcal/min: Unit not found
Error: Error parsing unit kcal: Unit not found
Error: Error parsing unit %: Parse error
Error: Error parsing unit kcal/mol: Unit not found
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.00442/0.3486, allocations: 3.392 MB / 455.7 MB, free: 117.9 MB / 410.7 MB
Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0004182/0.349, allocations: 0.4928 MB / 456.2 MB, free: 117.8 MB / 410.7 MB
Notification: Performance of simCode: alias equations: time 0.0003484/0.3494, allocations: 168.4 kB / 456.3 MB, free: 117.7 MB / 410.7 MB
Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0001633/0.3495, allocations: 92.78 kB / 456.4 MB, free: 117.7 MB / 410.7 MB
Notification: Performance of SimCode: time 1.082e-06/0.3495, allocations: 0 / 456.4 MB, free: 117.7 MB / 410.7 MB
Notification: Performance of Templates: time 0.06797/0.4175, allocations: 72.39 MB / 0.5164 GB, free: 70.1 MB / 410.7 MB
"
[Timeout remaining time 660]
make -j1 -f Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.makefile [Timeout 660]
(rm -f Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.pipe ; mkfifo Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.pipe ; head -c 1048576 < Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.pipe >> ../files/Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.sim & ./Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC -abortSlowSimulation -alarm=240  -lv LOG_STATS > Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.pipe 2>&1) [Timeout 240]
[Calling os._exit(0), Time elapsed: 5.640740254893899]