Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001291/0.001291, allocations: 93.06 kB / 19.65 MB, free: 276 kB / 13.93 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001098/0.001098, allocations: 169 kB / 23.02 MB, free: 1.547 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.054/1.054, allocations: 177.1 MB / 203.4 MB, free: 5.418 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/package.mo): time 0.07215/0.07215, allocations: 12.76 MB / 272.7 MB, free: 144 kB / 250.7 MB
"
[Timeout remaining time 180]
Using package Bodylight with version 1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC,tolerance=1e-14,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC")
translateModel(Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC,tolerance=1e-14,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 2.024e-06/2.024e-06, allocations: 0 / 346.7 MB, free: 1.23 MB / 266.7 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 2.888e-05/3.091e-05, allocations: 8.078 kB / 346.7 MB, free: 1.223 MB / 266.7 MB
Notification: Performance of NFInst.instantiate(Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC): time 0.005482/0.005513, allocations: 5.835 MB / 352.6 MB, free: 11.36 MB / 282.7 MB
Notification: Performance of NFInst.instExpressions: time 0.006965/0.01248, allocations: 5.89 MB / 358.4 MB, free: 5.449 MB / 282.7 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.0006719/0.01315, allocations: 47.5 kB / 358.5 MB, free: 5.402 MB / 282.7 MB
Notification: Performance of NFTyping.typeComponents: time 0.0003745/0.01352, allocations: 182.3 kB / 358.7 MB, free: 5.223 MB / 282.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.OxyRHm.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.OxyRHm.Utilities.readReal' contains a call to impure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.OxyRHm.Utilities.UnitConversions.findUnit'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.DeoxyRHm.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.DeoxyRHm.Utilities.readReal' contains a call to impure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.DeoxyRHm.Utilities.UnitConversions.findUnit'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.OxyTHm.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.OxyTHm.Utilities.readReal' contains a call to impure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.OxyTHm.Utilities.UnitConversions.findUnit'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.DeoxyTHm.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.DeoxyTHm.Utilities.readReal' contains a call to impure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.DeoxyTHm.Utilities.UnitConversions.findUnit'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.oxygen_unbound.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.oxygen_unbound.Utilities.readReal' contains a call to impure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.oxygen_unbound.Utilities.UnitConversions.findUnit'.
Notification: Performance of NFTyping.typeBindings: time 0.002209/0.01573, allocations: 1.021 MB / 359.7 MB, free: 4.195 MB / 282.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.OxyRHm.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.OxyRHm.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.DeoxyRHm.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.DeoxyRHm.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.OxyTHm.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.OxyTHm.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.DeoxyTHm.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.DeoxyTHm.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.oxygen_unbound.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.oxygen_unbound.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
Notification: Performance of NFTyping.typeClassSections: time 0.001838/0.01757, allocations: 1.02 MB / 360.7 MB, free: 3.172 MB / 282.7 MB
Notification: Performance of NFFlatten.flatten: time 0.002961/0.02053, allocations: 3.244 MB / 364 MB, free: 15.91 MB / 298.7 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.000739/0.02127, allocations: 0.5661 MB / 364.5 MB, free: 15.31 MB / 298.7 MB
Notification: Performance of NFEvalConstants.evaluate: time 0.002142/0.02341, allocations: 1.644 MB / 366.2 MB, free: 13.66 MB / 298.7 MB
Notification: Performance of NFSimplifyModel.simplify: time 0.001869/0.02528, allocations: 1.527 MB / 367.7 MB, free: 12.13 MB / 298.7 MB
Notification: Performance of NFPackage.collectConstants: time 0.0004678/0.02575, allocations: 168 kB / 367.9 MB, free: 11.97 MB / 298.7 MB
Notification: Performance of NFFlatten.collectFunctions: time 0.0004993/0.02625, allocations: 184 kB / 368 MB, free: 11.79 MB / 298.7 MB
Notification: Performance of NFScalarize.scalarize: time 0.0005052/0.02675, allocations: 0.6733 MB / 368.7 MB, free: 11.11 MB / 298.7 MB
Notification: Performance of NFVerifyModel.verify: time 0.001219/0.02797, allocations: 0.8687 MB / 369.6 MB, free: 10.24 MB / 298.7 MB
Notification: Performance of NFConvertDAE.convert: time 0.002887/0.03086, allocations: 2.546 MB / 372.1 MB, free: 7.688 MB / 298.7 MB
Notification: Performance of FrontEnd - DAE generated: time 6.582e-06/0.03087, allocations: 0 / 372.1 MB, free: 7.688 MB / 298.7 MB
Notification: Performance of FrontEnd: time 2.175e-06/0.03087, allocations: 0 / 372.1 MB, free: 7.688 MB / 298.7 MB
Notification: Performance of Transformations before backend: time 4.296e-05/0.03091, allocations: 0 / 372.1 MB, free: 7.688 MB / 298.7 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 387
 * Number of variables: 387
Notification: Performance of Generate backend data structure: time 0.004714/0.03563, allocations: 3.706 MB / 375.8 MB, free: 3.922 MB / 298.7 MB
Notification: Performance of prepare preOptimizeDAE: time 5.062e-05/0.03568, allocations: 11.98 kB / 375.8 MB, free: 3.91 MB / 298.7 MB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.001071/0.03675, allocations: 0.495 MB / 376.3 MB, free: 3.414 MB / 298.7 MB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.002734/0.03948, allocations: 1.642 MB / 378 MB, free: 1.707 MB / 298.7 MB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 8.688e-05/0.03957, allocations: 123.4 kB / 378.1 MB, free: 1.586 MB / 298.7 MB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.0001648/0.03973, allocations: 160.4 kB / 378.3 MB, free: 1.43 MB / 298.7 MB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.00174/0.04147, allocations: 1.258 MB / 379.5 MB, free: 104 kB / 298.7 MB
Notification: Performance of preOpt findStateOrder (simulation): time 2.664e-05/0.0415, allocations: 7.938 kB / 379.5 MB, free: 96 kB / 298.7 MB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 9.776e-05/0.0416, allocations: 56 kB / 379.6 MB, free: 40 kB / 298.7 MB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 8.972e-05/0.04169, allocations: 63.03 kB / 379.6 MB, free: 15.97 MB / 314.7 MB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.001188/0.04288, allocations: 0.6496 MB / 380.3 MB, free: 15.32 MB / 314.7 MB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.008495/0.05137, allocations: 5.856 MB / 386.1 MB, free: 9.312 MB / 314.7 MB
Notification: Performance of preOpt comSubExp (simulation): time 0.0009874/0.05236, allocations: 0.7807 MB / 386.9 MB, free: 8.434 MB / 314.7 MB
Notification: Performance of preOpt resolveLoops (simulation): time 0.0004256/0.05278, allocations: 347.3 kB / 387.3 MB, free: 8.062 MB / 314.7 MB
Notification: Performance of preOpt evalFunc (simulation): time 6.771e-05/0.05285, allocations: 24.94 kB / 387.3 MB, free: 8.035 MB / 314.7 MB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 3.744e-05/0.05289, allocations: 54.33 kB / 387.3 MB, free: 7.973 MB / 314.7 MB
Notification: Performance of pre-optimization done (n=118): time 4.639e-06/0.05289, allocations: 0 / 387.3 MB, free: 7.973 MB / 314.7 MB
Notification: Performance of matching and sorting (n=183): time 0.0205/0.0734, allocations: 10.27 MB / 397.6 MB, free: 13.65 MB / 330.7 MB
Notification: Performance of inlineWhenForInitialization (initialization): time 0.0001163/0.07351, allocations: 253.3 kB / 397.9 MB, free: 13.35 MB / 330.7 MB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.002646/0.07616, allocations: 2.129 MB / 400 MB, free: 11.19 MB / 330.7 MB
Notification: Performance of collectPreVariables (initialization): time 0.0003126/0.07647, allocations: 61.7 kB / 400 MB, free: 11.12 MB / 330.7 MB
Notification: Performance of collectInitialEqns (initialization): time 0.0007139/0.07719, allocations: 1.249 MB / 401.3 MB, free: 9.859 MB / 330.7 MB
Notification: Performance of collectInitialBindings (initialization): time 0.000514/0.0777, allocations: 0.6936 MB / 402 MB, free: 9.16 MB / 330.7 MB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.0005464/0.07825, allocations: 474.3 kB / 402.4 MB, free: 8.688 MB / 330.7 MB
Notification: Performance of setup shared object (initialization): time 0.0001041/0.07835, allocations: 484.7 kB / 402.9 MB, free: 8.211 MB / 330.7 MB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.0007448/0.0791, allocations: 372.4 kB / 403.3 MB, free: 7.844 MB / 330.7 MB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.001111/0.08021, allocations: 1.325 MB / 404.6 MB, free: 6.137 MB / 330.7 MB
Notification: Performance of analyzeInitialSystem (initialization): time 0.002115/0.08232, allocations: 1.898 MB / 406.5 MB, free: 3.867 MB / 330.7 MB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 1.527e-05/0.08234, allocations: 4 kB / 406.5 MB, free: 3.863 MB / 330.7 MB
Notification: Performance of matching and sorting (n=291) (initialization): time 0.1671/0.2494, allocations: 4.792 MB / 411.3 MB, free: 59.99 MB / 330.7 MB
Notification: Performance of prepare postOptimizeDAE: time 4.097e-05/0.2495, allocations: 18.05 kB / 411.3 MB, free: 59.98 MB / 330.7 MB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 3.324e-05/0.2495, allocations: 20.31 kB / 411.3 MB, free: 59.98 MB / 330.7 MB
Notification: Performance of postOpt tearingSystem (initialization): time 0.0151/0.2646, allocations: 4.851 MB / 416.2 MB, free: 59.95 MB / 330.7 MB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.001474/0.2661, allocations: 448.1 kB / 416.6 MB, free: 59.95 MB / 330.7 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 0.02003/0.2861, allocations: 11.41 MB / 428 MB, free: 55.5 MB / 330.7 MB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.001716/0.2878, allocations: 257.6 kB / 428.3 MB, free: 55.42 MB / 330.7 MB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.0001727/0.288, allocations: 87.97 kB / 428.4 MB, free: 55.42 MB / 330.7 MB
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 89
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (205):
 * Single equations (assignments): 203
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 2
 * Mixed (continuous/discrete) equation systems: 0
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 1 system
   {(8,36,34.4%)}
 * Non-linear torn systems (#iteration vars, #inner vars): 1 system
   {(10,34)}
Notification: Performance of prepare postOptimizeDAE: time 0.0005932/0.2886, allocations: 296.4 kB / 428.7 MB, free: 55.25 MB / 330.7 MB
Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0004927/0.2891, allocations: 312.9 kB / 429 MB, free: 55.25 MB / 330.7 MB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.000414/0.2895, allocations: 389.5 kB / 429.3 MB, free: 54.97 MB / 330.7 MB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 1.658e-05/0.2895, allocations: 20.81 kB / 429.4 MB, free: 54.97 MB / 330.7 MB
Notification: Performance of postOpt constantLinearSystem (simulation): time 4.301e-05/0.2896, allocations: 10.5 kB / 429.4 MB, free: 54.97 MB / 330.7 MB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 1.411e-05/0.2896, allocations: 7.969 kB / 429.4 MB, free: 54.96 MB / 330.7 MB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.01576/0.3053, allocations: 7.804 MB / 437.2 MB, free: 48.77 MB / 330.7 MB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 1.516e-05/0.3053, allocations: 16 kB / 437.2 MB, free: 48.76 MB / 330.7 MB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0005439/0.3059, allocations: 235.1 kB / 437.4 MB, free: 48.55 MB / 330.7 MB
Notification: Performance of postOpt tearingSystem (simulation): time 0.01148/0.3174, allocations: 4.646 MB / 442.1 MB, free: 43.91 MB / 330.7 MB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 0.0001993/0.3176, allocations: 56 kB / 442.1 MB, free: 43.86 MB / 330.7 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 0.01468/0.3322, allocations: 10.78 MB / 452.9 MB, free: 32.88 MB / 330.7 MB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 1.277e-05/0.3323, allocations: 23.88 kB / 452.9 MB, free: 32.85 MB / 330.7 MB
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.009878/0.3421, allocations: 6.239 MB / 459.2 MB, free: 26.31 MB / 330.7 MB
Notification: Performance of postOpt removeConstants (simulation): time 0.001157/0.3433, allocations: 0.5235 MB / 459.7 MB, free: 25.78 MB / 330.7 MB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0002631/0.3436, allocations: 55.98 kB / 459.8 MB, free: 25.73 MB / 330.7 MB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.001064/0.3446, allocations: 215 kB / 460 MB, free: 25.52 MB / 330.7 MB
Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0006163/0.3452, allocations: 256.2 kB / 460.2 MB, free: 25.27 MB / 330.7 MB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 8.684e-05/0.3453, allocations: 67.98 kB / 460.3 MB, free: 25.2 MB / 330.7 MB
Notification: Performance of sorting global known variables: time 0.0009887/0.3463, allocations: 1.123 MB / 461.4 MB, free: 24.07 MB / 330.7 MB
Notification: Performance of sort global known variables: time 2.9e-07/0.3463, allocations: 0 / 461.4 MB, free: 24.07 MB / 330.7 MB
Notification: Performance of remove unused functions: time 0.002467/0.3488, allocations: 1.008 MB / 462.4 MB, free: 23.06 MB / 330.7 MB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 72
 * Number of states: 7 (totalHb.state[1],T0_in_T.state[3],T0_in_T.state[2],T0_in_T.state[1],R0_in_R.state[3],R0_in_R.state[2],R0_in_R.state[1])
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (111):
 * Single equations (assignments): 109
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 2
 * Mixed (continuous/discrete) equation systems: 0
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 1 system
   {(8,36,34.4%)}
 * Non-linear torn systems (#iteration vars, #inner vars): 1 system
   {(10,34)}
Notification: Performance of Backend phase and start with SimCode phase: time 0.0002566/0.349, allocations: 168.9 kB / 462.6 MB, free: 22.89 MB / 330.7 MB
Notification: Performance of simCode: created initialization part: time 0.005178/0.3542, allocations: 3.185 MB / 465.8 MB, free: 19.68 MB / 330.7 MB
Notification: Performance of simCode: created event and clocks part: time 1.06e-05/0.3542, allocations: 4 kB / 465.8 MB, free: 19.67 MB / 330.7 MB
Notification: Performance of simCode: created simulation system equations: time 0.00387/0.3581, allocations: 2.36 MB / 468.1 MB, free: 17.29 MB / 330.7 MB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.002487/0.3606, allocations: 0.5229 MB / 468.6 MB, free: 16.78 MB / 330.7 MB
Error: Error parsing unit kcal: Unit not found
Error: Error parsing unit kcal/min: Unit not found
Error: Error parsing unit kcal/mol: Unit not found
Error: Error parsing unit %: Parse error
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.007808/0.3684, allocations: 5.135 MB / 473.8 MB, free: 11.33 MB / 330.7 MB
Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0008426/0.3692, allocations: 0.7196 MB / 474.5 MB, free: 10.58 MB / 330.7 MB
Notification: Performance of simCode: alias equations: time 0.0009185/0.3701, allocations: 423.7 kB / 474.9 MB, free: 10.16 MB / 330.7 MB
Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0002719/0.3704, allocations: 128.5 kB / 475 MB, free: 10.04 MB / 330.7 MB
Notification: Performance of SimCode: time 2.625e-06/0.3704, allocations: 0 / 475 MB, free: 10.04 MB / 330.7 MB
Notification: Performance of Templates: time 0.08548/0.4559, allocations: 80.94 MB / 0.5429 GB, free: 9.469 MB / 410.7 MB
"
[Timeout remaining time 660]
make -j1 -f Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.makefile [Timeout 660]
(rm -f Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.pipe ; mkfifo Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.pipe ; head -c 1048576 < Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.pipe >> ../files/Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.sim & ./Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC -abortSlowSimulation -alarm=240  -lv LOG_STATS > Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.pipe 2>&1) [Timeout 240]
[Calling os._exit(0), Time elapsed: 5.585518375039101]