Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001416/0.001416, allocations: 93.06 kB / 19.65 MB, free: 276 kB / 13.93 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001651/0.001651, allocations: 165 kB / 23.01 MB, free: 1.551 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9539/0.9539, allocations: 177.1 MB / 203.4 MB, free: 5.633 MB / 186.7 MB " [Timeout remaining time 179] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180] "[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory. Missing names are: Paracetamol_Experiment Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.563/1.563, allocations: 273.5 MB / 0.5209 GB, free: 14.88 MB / 458.7 MB " [Timeout remaining time 178] Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: translateModel(Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body,tolerance=1e-06,outputFormat="empty",numberOfIntervals=499,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body") translateModel(Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body,tolerance=1e-06,outputFormat="empty",numberOfIntervals=499,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body") [Timeout 660] "Notification: Performance of FrontEnd - loaded program: time 1.433e-06/1.433e-06, allocations: 0 / 0.647 GB, free: 38.43 MB / 0.5262 GB Notification: Performance of FrontEnd - Absyn->SCode: time 1.806e-05/1.95e-05, allocations: 2.312 kB / 0.647 GB, free: 38.43 MB / 0.5262 GB Notification: Performance of NFInst.instantiate(Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body): time 0.007556/0.007576, allocations: 11.76 MB / 0.6585 GB, free: 30.75 MB / 0.5262 GB Notification: Performance of NFInst.instExpressions: time 0.003306/0.01088, allocations: 2.478 MB / 0.6609 GB, free: 29.02 MB / 0.5262 GB Notification: Performance of NFInst.updateImplicitVariability: time 0.0004341/0.01132, allocations: 21 kB / 0.661 GB, free: 29.02 MB / 0.5262 GB Notification: Performance of NFTyping.typeComponents: time 0.0003777/0.01169, allocations: 308.5 kB / 0.6613 GB, free: 28.84 MB / 0.5262 GB Notification: Performance of NFTyping.typeBindings: time 0.0008877/0.01258, allocations: 0.775 MB / 0.662 GB, free: 28.28 MB / 0.5262 GB Notification: Performance of NFTyping.typeClassSections: time 0.0007376/0.01332, allocations: 0.6003 MB / 0.6626 GB, free: 27.92 MB / 0.5262 GB Notification: Performance of NFFlatten.flatten: time 0.001514/0.01483, allocations: 2.869 MB / 0.6654 GB, free: 26.38 MB / 0.5262 GB Notification: Performance of NFFlatten.resolveConnections: time 0.001976/0.01681, allocations: 3.227 MB / 0.6686 GB, free: 24.46 MB / 0.5262 GB Notification: Performance of NFEvalConstants.evaluate: time 0.001852/0.01866, allocations: 2.561 MB / 0.6711 GB, free: 23.39 MB / 0.5262 GB Notification: Performance of NFSimplifyModel.simplify: time 0.002219/0.02088, allocations: 1.976 MB / 0.673 GB, free: 22.87 MB / 0.5262 GB Notification: Performance of NFPackage.collectConstants: time 0.0004462/0.02133, allocations: 424.4 kB / 0.6734 GB, free: 22.87 MB / 0.5262 GB Notification: Performance of NFFlatten.collectFunctions: time 0.0005479/0.02187, allocations: 427.2 kB / 0.6738 GB, free: 22.87 MB / 0.5262 GB Notification: Performance of NFScalarize.scalarize: time 0.0005151/0.02239, allocations: 0.9296 MB / 0.6747 GB, free: 22.27 MB / 0.5262 GB Notification: Performance of NFVerifyModel.verify: time 0.001051/0.02344, allocations: 1.295 MB / 0.676 GB, free: 21.66 MB / 0.5262 GB Notification: Performance of NFConvertDAE.convert: time 0.002213/0.02565, allocations: 2.6 MB / 0.6785 GB, free: 20.39 MB / 0.5262 GB Notification: Performance of FrontEnd - DAE generated: time 2.334e-06/0.02566, allocations: 0 / 0.6785 GB, free: 20.39 MB / 0.5262 GB Notification: Performance of FrontEnd: time 9.22e-07/0.02566, allocations: 1.312 kB / 0.6785 GB, free: 20.39 MB / 0.5262 GB Notification: Performance of Transformations before backend: time 2.079e-05/0.02568, allocations: 0 / 0.6785 GB, free: 20.39 MB / 0.5262 GB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 449 * Number of variables: 449 Notification: Performance of Generate backend data structure: time 0.003783/0.02946, allocations: 2.899 MB / 0.6813 GB, free: 18.33 MB / 0.5262 GB Notification: Performance of prepare preOptimizeDAE: time 3.26e-05/0.02949, allocations: 13.81 kB / 0.6814 GB, free: 18.33 MB / 0.5262 GB Notification: Performance of preOpt normalInlineFunction (simulation): time 0.000618/0.03011, allocations: 369 kB / 0.6817 GB, free: 18.16 MB / 0.5262 GB Notification: Performance of preOpt evaluateParameters (simulation): time 0.001157/0.03127, allocations: 1.109 MB / 0.6828 GB, free: 17.27 MB / 0.5262 GB Notification: Performance of preOpt simplifyIfEquations (simulation): time 7.148e-05/0.03134, allocations: 134.1 kB / 0.6829 GB, free: 17.21 MB / 0.5262 GB Notification: Performance of preOpt expandDerOperator (simulation): time 0.0003315/0.03167, allocations: 211.9 kB / 0.6831 GB, free: 17.13 MB / 0.5262 GB Notification: Performance of preOpt clockPartitioning (simulation): time 0.003342/0.03501, allocations: 3.045 MB / 0.6861 GB, free: 15.21 MB / 0.5262 GB Notification: Performance of preOpt findStateOrder (simulation): time 4.546e-05/0.03506, allocations: 12.5 kB / 0.6861 GB, free: 15.2 MB / 0.5262 GB Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.0002248/0.03528, allocations: 77.28 kB / 0.6862 GB, free: 15.14 MB / 0.5262 GB Notification: Performance of preOpt inlineArrayEqn (simulation): time 3.253e-05/0.03532, allocations: 42.47 kB / 0.6862 GB, free: 15.14 MB / 0.5262 GB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.002705/0.03802, allocations: 2.006 MB / 0.6882 GB, free: 14.41 MB / 0.5262 GB Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.008781/0.0468, allocations: 7.121 MB / 0.6951 GB, free: 7.922 MB / 0.5262 GB Notification: Performance of preOpt comSubExp (simulation): time 0.001424/0.04823, allocations: 1.086 MB / 0.6962 GB, free: 6.805 MB / 0.5262 GB Notification: Performance of preOpt resolveLoops (simulation): time 0.0009466/0.04917, allocations: 0.7265 MB / 0.6969 GB, free: 6.051 MB / 0.5262 GB Notification: Performance of preOpt evalFunc (simulation): time 6.962e-05/0.04924, allocations: 37.98 kB / 0.6969 GB, free: 6.016 MB / 0.5262 GB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.001444/0.05069, allocations: 1.599 MB / 0.6985 GB, free: 4.324 MB / 0.5262 GB Notification: Performance of preOpt simplifyInStream (simulation): time 0.003865/0.05455, allocations: 1.852 MB / 0.7003 GB, free: 2.512 MB / 0.5262 GB Notification: Performance of pre-optimization done (n=198): time 4.088e-06/0.05456, allocations: 0 / 0.7003 GB, free: 2.512 MB / 0.5262 GB Notification: Performance of matching and sorting (n=202): time 0.008196/0.06275, allocations: 5.499 MB / 0.7057 GB, free: 12.88 MB / 0.5418 GB Notification: Performance of inlineWhenForInitialization (initialization): time 0.0001785/0.06293, allocations: 413.8 kB / 0.7061 GB, free: 12.39 MB / 0.5418 GB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0007948/0.06373, allocations: 0.8736 MB / 0.7069 GB, free: 11.49 MB / 0.5418 GB Notification: Performance of collectPreVariables (initialization): time 0.000158/0.06388, allocations: 69.7 kB / 0.707 GB, free: 11.41 MB / 0.5418 GB Notification: Performance of collectInitialEqns (initialization): time 0.0003778/0.06426, allocations: 0.7429 MB / 0.7077 GB, free: 10.66 MB / 0.5418 GB Notification: Performance of collectInitialBindings (initialization): time 0.000466/0.06473, allocations: 0.7166 MB / 0.7084 GB, free: 9.938 MB / 0.5418 GB Notification: Performance of simplifyInitialFunctions (initialization): time 0.0008361/0.06556, allocations: 0.5916 MB / 0.709 GB, free: 9.336 MB / 0.5418 GB Notification: Performance of setup shared object (initialization): time 9.577e-05/0.06566, allocations: 476.8 kB / 0.7095 GB, free: 8.867 MB / 0.5418 GB Notification: Performance of preBalanceInitialSystem (initialization): time 0.001266/0.06693, allocations: 0.9917 MB / 0.7104 GB, free: 7.816 MB / 0.5418 GB Notification: Performance of partitionIndependentBlocks (initialization): time 0.001815/0.06874, allocations: 1.644 MB / 0.712 GB, free: 5.824 MB / 0.5418 GB Notification: Performance of analyzeInitialSystem (initialization): time 0.003817/0.07256, allocations: 3.378 MB / 0.7153 GB, free: 2.082 MB / 0.5418 GB Notification: Performance of solveInitialSystemEqSystem (initialization): time 7.214e-06/0.07257, allocations: 4 kB / 0.7153 GB, free: 2.078 MB / 0.5418 GB Notification: Performance of matching and sorting (n=298) (initialization): time 0.0038/0.07636, allocations: 3.049 MB / 0.7183 GB, free: 14.91 MB / 0.5574 GB Notification: Performance of prepare postOptimizeDAE: time 0.0001317/0.0765, allocations: 271.3 kB / 0.7186 GB, free: 14.59 MB / 0.5574 GB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 1.429e-05/0.07651, allocations: 16.09 kB / 0.7186 GB, free: 14.57 MB / 0.5574 GB Notification: Performance of postOpt tearingSystem (initialization): time 2.874e-05/0.07654, allocations: 24 kB / 0.7186 GB, free: 14.55 MB / 0.5574 GB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.001902/0.07844, allocations: 0.8305 MB / 0.7194 GB, free: 13.72 MB / 0.5574 GB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 2.308e-05/0.07846, allocations: 31.92 kB / 0.7194 GB, free: 13.69 MB / 0.5574 GB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.001095/0.07956, allocations: 103.9 kB / 0.7195 GB, free: 13.59 MB / 0.5574 GB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.0002243/0.07978, allocations: 203.7 kB / 0.7197 GB, free: 13.39 MB / 0.5574 GB Warning: Assuming fixed start value for the following 42 variables: venous.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real lungs.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real arterial.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real adipose.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real bone.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real brain.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real heart.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real muscle.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real skin.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real gut.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real spleen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real liver.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real kidney.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real gonads.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real rest.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real lumenCompartment.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real periodicOralDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicOralDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real periodicOralDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicIMDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicIMDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real periodicIMDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicIVDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicIVDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicIADose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicIADose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real nasal_mucosa.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real periodicNasalDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicNasalDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real periodicNasalDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicNasalDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real periodicNasalDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real periodicIMDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real periodicIMDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real periodicOralDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real periodicOralDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real lumenCompartment.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real lumenCompartment.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real periodicNasalDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean periodicIMDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean periodicOralDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean lumenCompartment.rising:DISCRETE(fixed = true protected = true ) type: Boolean Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 55 * Number of states: 0 () * Number of discrete variables: 57 ($PRE.periodicNasalDose.absorptionLumen.Cmin,periodicNasalDose.absorptionLumen.Cmin,$PRE.periodicNasalDose.absorptionLumen.Cmax,periodicNasalDose.absorptionLumen.Cmax,$PRE.periodicIMDose.absorptionLumen.Cmin,periodicIMDose.absorptionLumen.Cmin,$PRE.periodicIMDose.absorptionLumen.Cmax,periodicIMDose.absorptionLumen.Cmax,$PRE.periodicOralDose.absorptionLumen.Cmin,periodicOralDose.absorptionLumen.Cmin,$PRE.periodicOralDose.absorptionLumen.Cmax,periodicOralDose.absorptionLumen.Cmax,$PRE.lumenCompartment.Cmin,lumenCompartment.Cmin,$PRE.lumenCompartment.Cmax,lumenCompartment.Cmax,$PRE.periodicNasalDose.pulse.count,$PRE.periodicNasalDose.pulse.T_start,$PRE.periodicNasalDose.absorptionLumen.rising,$PRE.periodicIADose.pulse.count,$PRE.periodicIADose.pulse.T_start,$PRE.periodicIVDose.pulse.count,$PRE.periodicIVDose.pulse.T_start,$PRE.periodicIMDose.pulse.count,$PRE.periodicIMDose.pulse.T_start,$PRE.periodicIMDose.absorptionLumen.rising,$PRE.periodicOralDose.pulse.count,$PRE.periodicOralDose.pulse.T_start,$PRE.periodicOralDose.absorptionLumen.rising,$PRE.lumenCompartment.rising,periodicNasalDose.pulse.count,periodicNasalDose.pulse.T_start,periodicNasalDose.absorptionLumen.rising,periodicIADose.pulse.count,periodicIADose.pulse.T_start,periodicIVDose.pulse.count,periodicIVDose.pulse.T_start,periodicIMDose.pulse.count,periodicIMDose.pulse.T_start,periodicIMDose.absorptionLumen.rising,periodicOralDose.pulse.count,periodicOralDose.pulse.T_start,periodicOralDose.absorptionLumen.rising,lumenCompartment.rising,$whenCondition8,$whenCondition7,$whenCondition6,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1,$whenCondition9,$whenCondition10,$whenCondition11,$whenCondition12,$whenCondition13) * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (289): * Single equations (assignments): 280 * Array equations: 0 * Algorithm blocks: 9 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of prepare postOptimizeDAE: time 0.0007683/0.08055, allocations: 0.5831 MB / 0.7203 GB, free: 12.8 MB / 0.5574 GB Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0004281/0.08098, allocations: 223 kB / 0.7205 GB, free: 12.58 MB / 0.5574 GB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.003583/0.08456, allocations: 2.728 MB / 0.7232 GB, free: 9.867 MB / 0.5574 GB Notification: Performance of postOpt inlineArrayEqn (simulation): time 9.698e-06/0.08457, allocations: 20 kB / 0.7232 GB, free: 9.848 MB / 0.5574 GB Notification: Performance of postOpt constantLinearSystem (simulation): time 5.28e-06/0.08458, allocations: 0 / 0.7232 GB, free: 9.848 MB / 0.5574 GB Notification: Performance of postOpt simplifysemiLinear (simulation): time 1.382e-05/0.08459, allocations: 11.95 kB / 0.7232 GB, free: 9.836 MB / 0.5574 GB Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.00476/0.08935, allocations: 3.645 MB / 0.7268 GB, free: 6.094 MB / 0.5574 GB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 8.136e-06/0.08936, allocations: 0 / 0.7268 GB, free: 6.094 MB / 0.5574 GB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.001397/0.09076, allocations: 439.3 kB / 0.7272 GB, free: 5.664 MB / 0.5574 GB Notification: Performance of postOpt tearingSystem (simulation): time 9.868e-06/0.09077, allocations: 4 kB / 0.7272 GB, free: 5.66 MB / 0.5574 GB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 0.0001614/0.09093, allocations: 111.8 kB / 0.7273 GB, free: 5.551 MB / 0.5574 GB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 6.492e-06/0.09094, allocations: 11.97 kB / 0.7273 GB, free: 5.539 MB / 0.5574 GB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 4.388e-06/0.09094, allocations: 4 kB / 0.7273 GB, free: 5.535 MB / 0.5574 GB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.004213/0.09515, allocations: 3.102 MB / 0.7303 GB, free: 2.332 MB / 0.5574 GB Notification: Performance of postOpt removeConstants (simulation): time 0.0006605/0.09581, allocations: 386.6 kB / 0.7307 GB, free: 1.953 MB / 0.5574 GB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0002307/0.09604, allocations: 63.95 kB / 0.7308 GB, free: 1.891 MB / 0.5574 GB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0008149/0.09686, allocations: 71.95 kB / 0.7308 GB, free: 1.82 MB / 0.5574 GB Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0002469/0.09711, allocations: 161.7 kB / 0.731 GB, free: 1.66 MB / 0.5574 GB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 0.0001446/0.09725, allocations: 119.8 kB / 0.7311 GB, free: 1.543 MB / 0.5574 GB Notification: Performance of sorting global known variables: time 0.0005332/0.09778, allocations: 0.5919 MB / 0.7317 GB, free: 0.9414 MB / 0.5574 GB Notification: Performance of sort global known variables: time 7e-08/0.09778, allocations: 0 / 0.7317 GB, free: 0.9414 MB / 0.5574 GB Notification: Performance of remove unused functions: time 0.001411/0.09919, allocations: 0.6328 MB / 0.7323 GB, free: 316 kB / 0.5574 GB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 2 * Number of states: 52 (venous.M,venous.AUC,lungs.M,lungs.AUC,arterial.M,arterial.AUC,adipose.M,adipose.AUC,bone.M,bone.AUC,brain.M,brain.AUC,heart.M,heart.AUC,muscle.M,muscle.AUC,skin.M,skin.AUC,gut.M,gut.AUC,spleen.M,spleen.AUC,liver.M,liver.AUC,kidney.M,kidney.AUC,kidneyElim.MExc,liverElim.MExc,gonads.M,gonads.AUC,rest.M,rest.AUC,lumenCompartment.C,lumenCompartment.AUC,periodicOralDose.TotalCumulativeMass,periodicOralDose.absorptionLumen.C,periodicOralDose.absorptionLumen.AUC,periodicOralDose.variableDose.TotalCumulativeMass,periodicIMDose.TotalCumulativeMass,periodicIMDose.absorptionLumen.C,periodicIMDose.absorptionLumen.AUC,periodicIMDose.variableDose.TotalCumulativeMass,periodicIVDose.TotalCumulativeMass,periodicIVDose.variableDose.TotalCumulativeMass,periodicIADose.TotalCumulativeMass,periodicIADose.variableDose.TotalCumulativeMass,nasal_mucosa.M,nasal_mucosa.AUC,periodicNasalDose.TotalCumulativeMass,periodicNasalDose.absorptionLumen.C,periodicNasalDose.absorptionLumen.AUC,periodicNasalDose.variableDose.TotalCumulativeMass) * Number of discrete variables: 35 ($whenCondition13,$whenCondition12,$whenCondition11,$whenCondition10,$whenCondition9,$whenCondition1,$whenCondition2,$whenCondition3,$whenCondition4,$whenCondition5,$whenCondition6,$whenCondition7,$whenCondition8,lumenCompartment.Cmax,lumenCompartment.Cmin,lumenCompartment.rising,periodicOralDose.absorptionLumen.Cmax,periodicOralDose.absorptionLumen.Cmin,periodicOralDose.absorptionLumen.rising,periodicOralDose.pulse.T_start,periodicOralDose.pulse.count,periodicIMDose.absorptionLumen.Cmax,periodicIMDose.absorptionLumen.Cmin,periodicIMDose.absorptionLumen.rising,periodicIMDose.pulse.T_start,periodicIMDose.pulse.count,periodicIVDose.pulse.T_start,periodicIVDose.pulse.count,periodicIADose.pulse.T_start,periodicIADose.pulse.count,periodicNasalDose.absorptionLumen.Cmax,periodicNasalDose.absorptionLumen.Cmin,periodicNasalDose.absorptionLumen.rising,periodicNasalDose.pulse.T_start,periodicNasalDose.pulse.count) * Number of discrete states: 25 (periodicOralDose.pulse.count,periodicIMDose.pulse.count,periodicIVDose.pulse.count,periodicIADose.pulse.count,periodicNasalDose.pulse.count,periodicNasalDose.absorptionLumen.Cmin,$whenCondition8,periodicNasalDose.absorptionLumen.Cmax,$whenCondition7,periodicNasalDose.absorptionLumen.rising,periodicIMDose.absorptionLumen.Cmin,$whenCondition6,periodicIMDose.absorptionLumen.Cmax,$whenCondition5,periodicIMDose.absorptionLumen.rising,periodicOralDose.absorptionLumen.Cmin,$whenCondition4,periodicOralDose.absorptionLumen.Cmax,$whenCondition3,periodicOralDose.absorptionLumen.rising,lumenCompartment.Cmin,$whenCondition2,lumenCompartment.Cmax,$whenCondition1,lumenCompartment.rising) * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (190): * Single equations (assignments): 176 * Array equations: 0 * Algorithm blocks: 4 * Record equations: 0 * When equations: 10 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of Backend phase and start with SimCode phase: time 0.0002886/0.09948, allocations: 207 kB / 0.7325 GB, free: 108 kB / 0.5574 GB Notification: Performance of simCode: created initialization part: time 0.00287/0.1024, allocations: 2.68 MB / 0.7351 GB, free: 13.23 MB / 0.573 GB Notification: Performance of simCode: created event and clocks part: time 2.165e-06/0.1024, allocations: 3.938 kB / 0.7351 GB, free: 13.23 MB / 0.573 GB Notification: Performance of simCode: created simulation system equations: time 0.001241/0.1036, allocations: 1.203 MB / 0.7363 GB, free: 11.95 MB / 0.573 GB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.001365/0.105, allocations: 0.576 MB / 0.7369 GB, free: 11.4 MB / 0.573 GB Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.006203/0.1112, allocations: 5.134 MB / 0.7419 GB, free: 6.359 MB / 0.573 GB Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0002183/0.1114, allocations: 333.7 kB / 0.7422 GB, free: 6.008 MB / 0.573 GB Notification: Performance of simCode: alias equations: time 0.001221/0.1126, allocations: 498.8 kB / 0.7427 GB, free: 5.648 MB / 0.573 GB Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0009652/0.1136, allocations: 328 kB / 0.743 GB, free: 5.328 MB / 0.573 GB Notification: Performance of SimCode: time 1.172e-06/0.1136, allocations: 0 / 0.743 GB, free: 5.328 MB / 0.573 GB Notification: Performance of Templates: time 0.04025/0.1538, allocations: 41.58 MB / 0.7836 GB, free: 12.69 MB / 0.6199 GB " [Timeout remaining time 660] make -j1 -f Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.makefile [Timeout 660] (rm -f Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.sim & ./Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body -abortSlowSimulation -alarm=240 -lv LOG_STATS > Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.pipe 2>&1) [Timeout 240] [Calling sys.exit(0), Time elapsed: 5.72819215292111]