Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.0009031/0.0009031, allocations: 93.06 kB / 19.65 MB, free: 280 kB / 13.93 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001458/0.001458, allocations: 165 kB / 23.02 MB, free: 1.551 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9755/0.9755, allocations: 177.1 MB / 203.4 MB, free: 5.637 MB / 186.7 MB " [Timeout remaining time 179] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180] "[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory. Missing names are: Paracetamol_Experiment Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.603/1.603, allocations: 273.5 MB / 0.5209 GB, free: 14.84 MB / 458.7 MB " [Timeout remaining time 178] Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: translateModel(Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment,tolerance=1e-06,outputFormat="empty",numberOfIntervals=86400,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment") translateModel(Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment,tolerance=1e-06,outputFormat="empty",numberOfIntervals=86400,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment") [Timeout 660] "Notification: Performance of FrontEnd - loaded program: time 1.553e-06/1.553e-06, allocations: 0 / 0.647 GB, free: 38.53 MB / 0.5262 GB Notification: Performance of FrontEnd - Absyn->SCode: time 2.776e-05/2.932e-05, allocations: 3.688 kB / 0.647 GB, free: 38.52 MB / 0.5262 GB Notification: Performance of NFInst.instantiate(Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment): time 0.005281/0.00531, allocations: 6.724 MB / 0.6535 GB, free: 34.24 MB / 0.5262 GB Notification: Performance of NFInst.instExpressions: time 0.002766/0.008076, allocations: 2.017 MB / 0.6555 GB, free: 32.87 MB / 0.5262 GB Notification: Performance of NFInst.updateImplicitVariability: time 0.0003273/0.008404, allocations: 19.12 kB / 0.6555 GB, free: 32.86 MB / 0.5262 GB Notification: Performance of NFTyping.typeComponents: time 0.0004448/0.008848, allocations: 285.6 kB / 0.6558 GB, free: 32.72 MB / 0.5262 GB Notification: Performance of NFTyping.typeBindings: time 0.0005214/0.00937, allocations: 465.1 kB / 0.6562 GB, free: 32.4 MB / 0.5262 GB Notification: Performance of NFTyping.typeClassSections: time 0.0007733/0.01014, allocations: 0.5327 MB / 0.6568 GB, free: 32.06 MB / 0.5262 GB Notification: Performance of NFFlatten.flatten: time 0.001379/0.01152, allocations: 1.802 MB / 0.6585 GB, free: 31.05 MB / 0.5262 GB Notification: Performance of NFFlatten.resolveConnections: time 0.0003228/0.01184, allocations: 265.2 kB / 0.6588 GB, free: 30.9 MB / 0.5262 GB Notification: Performance of NFEvalConstants.evaluate: time 0.0007539/0.0126, allocations: 0.9104 MB / 0.6597 GB, free: 30.46 MB / 0.5262 GB Notification: Performance of NFSimplifyModel.simplify: time 0.0004928/0.01309, allocations: 0.5316 MB / 0.6602 GB, free: 30.26 MB / 0.5262 GB Notification: Performance of NFPackage.collectConstants: time 0.0001723/0.01326, allocations: 168 kB / 0.6603 GB, free: 30.26 MB / 0.5262 GB Notification: Performance of NFFlatten.collectFunctions: time 0.0004306/0.01369, allocations: 313.3 kB / 0.6606 GB, free: 30.21 MB / 0.5262 GB Notification: Performance of NFScalarize.scalarize: time 0.0002101/0.0139, allocations: 368.4 kB / 0.661 GB, free: 29.98 MB / 0.5262 GB Notification: Performance of NFVerifyModel.verify: time 0.000387/0.01429, allocations: 0.5202 MB / 0.6615 GB, free: 29.72 MB / 0.5262 GB Notification: Performance of NFConvertDAE.convert: time 0.001168/0.01546, allocations: 1.383 MB / 0.6628 GB, free: 28.97 MB / 0.5262 GB Notification: Performance of FrontEnd - DAE generated: time 4.839e-06/0.01546, allocations: 1.438 kB / 0.6628 GB, free: 28.97 MB / 0.5262 GB Notification: Performance of FrontEnd: time 1.533e-06/0.01547, allocations: 0.875 kB / 0.6628 GB, free: 28.97 MB / 0.5262 GB Notification: Performance of Transformations before backend: time 1.482e-05/0.01548, allocations: 0 / 0.6628 GB, free: 28.97 MB / 0.5262 GB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 233 * Number of variables: 233 Notification: Performance of Generate backend data structure: time 0.00183/0.01731, allocations: 2.33 MB / 0.6651 GB, free: 27.12 MB / 0.5262 GB Notification: Performance of prepare preOptimizeDAE: time 4.257e-05/0.01735, allocations: 13.89 kB / 0.6651 GB, free: 27.12 MB / 0.5262 GB Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0006786/0.01803, allocations: 0.5111 MB / 0.6656 GB, free: 26.92 MB / 0.5262 GB Notification: Performance of preOpt evaluateParameters (simulation): time 0.0006394/0.01867, allocations: 0.6906 MB / 0.6663 GB, free: 26.41 MB / 0.5262 GB Notification: Performance of preOpt simplifyIfEquations (simulation): time 4.382e-05/0.01871, allocations: 70.38 kB / 0.6664 GB, free: 26.38 MB / 0.5262 GB Notification: Performance of preOpt expandDerOperator (simulation): time 0.0001222/0.01884, allocations: 114.7 kB / 0.6665 GB, free: 26.34 MB / 0.5262 GB Notification: Performance of preOpt clockPartitioning (simulation): time 0.001182/0.02002, allocations: 1.305 MB / 0.6678 GB, free: 25.51 MB / 0.5262 GB Notification: Performance of preOpt findStateOrder (simulation): time 3.538e-05/0.02005, allocations: 20.19 kB / 0.6678 GB, free: 25.5 MB / 0.5262 GB Notification: Performance of preOpt replaceEdgeChange (simulation): time 5.831e-05/0.02011, allocations: 36.78 kB / 0.6678 GB, free: 25.47 MB / 0.5262 GB Notification: Performance of preOpt inlineArrayEqn (simulation): time 1.915e-05/0.02013, allocations: 21.09 kB / 0.6678 GB, free: 25.47 MB / 0.5262 GB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.000816/0.02095, allocations: 0.9735 MB / 0.6688 GB, free: 24.86 MB / 0.5262 GB Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.002372/0.02332, allocations: 2.638 MB / 0.6714 GB, free: 23.16 MB / 0.5262 GB Notification: Performance of preOpt comSubExp (simulation): time 0.0009875/0.02431, allocations: 1.172 MB / 0.6725 GB, free: 22.32 MB / 0.5262 GB Notification: Performance of preOpt resolveLoops (simulation): time 0.0004762/0.02478, allocations: 0.7914 MB / 0.6733 GB, free: 21.66 MB / 0.5262 GB Notification: Performance of preOpt evalFunc (simulation): time 5.147e-05/0.02483, allocations: 22.41 kB / 0.6733 GB, free: 21.66 MB / 0.5262 GB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.001007/0.02584, allocations: 1.658 MB / 0.6749 GB, free: 20.35 MB / 0.5262 GB Notification: Performance of pre-optimization done (n=157): time 2.776e-06/0.02584, allocations: 0 / 0.6749 GB, free: 20.35 MB / 0.5262 GB Notification: Performance of matching and sorting (n=165): time 0.005044/0.03089, allocations: 6.478 MB / 0.6812 GB, free: 15.62 MB / 0.5262 GB Notification: Performance of inlineWhenForInitialization (initialization): time 0.0001882/0.03108, allocations: 1.035 MB / 0.6823 GB, free: 14.4 MB / 0.5262 GB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0008281/0.03191, allocations: 0.9247 MB / 0.6832 GB, free: 13.98 MB / 0.5262 GB Notification: Performance of collectPreVariables (initialization): time 7.571e-05/0.03198, allocations: 74.92 kB / 0.6832 GB, free: 13.92 MB / 0.5262 GB Notification: Performance of collectInitialEqns (initialization): time 0.0002903/0.03227, allocations: 0.5729 MB / 0.6838 GB, free: 13.46 MB / 0.5262 GB Notification: Performance of collectInitialBindings (initialization): time 0.0002538/0.03253, allocations: 0.5276 MB / 0.6843 GB, free: 13.04 MB / 0.5262 GB Notification: Performance of simplifyInitialFunctions (initialization): time 0.0002947/0.03282, allocations: 285.6 kB / 0.6846 GB, free: 12.91 MB / 0.5262 GB Notification: Performance of setup shared object (initialization): time 3.822e-05/0.03286, allocations: 486.3 kB / 0.685 GB, free: 12.43 MB / 0.5262 GB Notification: Performance of preBalanceInitialSystem (initialization): time 0.0006155/0.03347, allocations: 0.9261 MB / 0.6859 GB, free: 11.68 MB / 0.5262 GB Notification: Performance of partitionIndependentBlocks (initialization): time 0.0007629/0.03424, allocations: 1.426 MB / 0.6873 GB, free: 10.27 MB / 0.5262 GB Notification: Performance of analyzeInitialSystem (initialization): time 0.001886/0.03612, allocations: 3.007 MB / 0.6903 GB, free: 7.559 MB / 0.5262 GB Notification: Performance of solveInitialSystemEqSystem (initialization): time 1.257e-05/0.03614, allocations: 3.625 kB / 0.6903 GB, free: 7.559 MB / 0.5262 GB Notification: Performance of matching and sorting (n=229) (initialization): time 0.002575/0.03871, allocations: 2.766 MB / 0.693 GB, free: 5.703 MB / 0.5262 GB Notification: Performance of prepare postOptimizeDAE: time 0.0001376/0.03885, allocations: 0.5658 MB / 0.6935 GB, free: 5.059 MB / 0.5262 GB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 1.48e-05/0.03886, allocations: 9.438 kB / 0.6935 GB, free: 5.059 MB / 0.5262 GB Notification: Performance of postOpt tearingSystem (initialization): time 3.542e-05/0.0389, allocations: 17.28 kB / 0.6936 GB, free: 5.059 MB / 0.5262 GB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0007466/0.03964, allocations: 343.9 kB / 0.6939 GB, free: 5.02 MB / 0.5262 GB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 3.206e-05/0.03968, allocations: 22.14 kB / 0.6939 GB, free: 5.016 MB / 0.5262 GB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0006875/0.04036, allocations: 76.64 kB / 0.694 GB, free: 4.992 MB / 0.5262 GB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.0002867/0.04065, allocations: 253.4 kB / 0.6942 GB, free: 4.969 MB / 0.5262 GB Warning: Assuming fixed start value for the following 40 variables: patient4.dose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient4.dose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient4.dose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient4.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient_citalopram_CYP2C19_2.dose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient_citalopram_CYP2C19_2.dose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient_citalopram_CYP2C19_2.dose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient_citalopram_CYP2C19_2.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient2.dose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient2.dose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient2.dose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient2.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient_citalopram_normal.dose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient_citalopram_normal.dose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient_citalopram_normal.dose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient_citalopram_normal.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient_citalopram_normal.dose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_citalopram_normal.dose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_citalopram_normal.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_citalopram_normal.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient2.dose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient2.dose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient2.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient2.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_citalopram_CYP2C19_2.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_citalopram_CYP2C19_2.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient4.dose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient4.dose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient4.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient4.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_citalopram_normal.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient_citalopram_normal.dose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient2.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient2.dose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient_citalopram_CYP2C19_2.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient_citalopram_CYP2C19_2.dose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient4.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient4.dose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 41 * Number of states: 0 () * Number of discrete variables: 92 ($PRE.patient_citalopram_normal.dose.absorptionLumen.Cmin,patient_citalopram_normal.dose.absorptionLumen.Cmin,$PRE.patient_citalopram_normal.dose.absorptionLumen.Cmax,patient_citalopram_normal.dose.absorptionLumen.Cmax,$PRE.patient_citalopram_normal.central.Cmin,patient_citalopram_normal.central.Cmin,$PRE.patient_citalopram_normal.central.Cmax,patient_citalopram_normal.central.Cmax,$PRE.patient2.dose.absorptionLumen.Cmin,patient2.dose.absorptionLumen.Cmin,$PRE.patient2.dose.absorptionLumen.Cmax,patient2.dose.absorptionLumen.Cmax,$PRE.patient2.central.Cmin,patient2.central.Cmin,$PRE.patient2.central.Cmax,patient2.central.Cmax,$PRE.patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmin,patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmin,$PRE.patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmax,patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmax,$PRE.patient_citalopram_CYP2C19_2.central.Cmin,patient_citalopram_CYP2C19_2.central.Cmin,$PRE.patient_citalopram_CYP2C19_2.central.Cmax,patient_citalopram_CYP2C19_2.central.Cmax,$PRE.patient4.dose.absorptionLumen.Cmin,patient4.dose.absorptionLumen.Cmin,$PRE.patient4.dose.absorptionLumen.Cmax,patient4.dose.absorptionLumen.Cmax,$PRE.patient4.central.Cmin,patient4.central.Cmin,$PRE.patient4.central.Cmax,patient4.central.Cmax,$PRE.patient_citalopram_normal.central.rising,$PRE.patient_citalopram_normal.dose.pulse.count,$PRE.patient_citalopram_normal.dose.pulse.T_start,$PRE.patient_citalopram_normal.dose.absorptionLumen.rising,patient_citalopram_normal.CYP2C19.status,patient_citalopram_normal.SLC22A2.status,patient_citalopram_normal.central.rising,patient_citalopram_normal.dose.pulse.count,patient_citalopram_normal.dose.pulse.T_start,patient_citalopram_normal.dose.absorptionLumen.rising,$whenCondition20,$whenCondition19,$whenCondition18,$whenCondition17,$whenCondition16,$PRE.patient2.central.rising,$PRE.patient2.dose.pulse.count,$PRE.patient2.dose.pulse.T_start,$PRE.patient2.dose.absorptionLumen.rising,patient2.CYP2C19.status,patient2.SLC22A2.status,patient2.central.rising,patient2.dose.pulse.count,patient2.dose.pulse.T_start,patient2.dose.absorptionLumen.rising,$whenCondition15,$whenCondition14,$whenCondition13,$whenCondition12,$whenCondition11,$PRE.patient_citalopram_CYP2C19_2.central.rising,$PRE.patient_citalopram_CYP2C19_2.dose.pulse.count,$PRE.patient_citalopram_CYP2C19_2.dose.pulse.T_start,$PRE.patient_citalopram_CYP2C19_2.dose.absorptionLumen.rising,patient_citalopram_CYP2C19_2.CYP2C19.status,patient_citalopram_CYP2C19_2.SLC22A2.status,patient_citalopram_CYP2C19_2.central.rising,patient_citalopram_CYP2C19_2.dose.pulse.count,patient_citalopram_CYP2C19_2.dose.pulse.T_start,patient_citalopram_CYP2C19_2.dose.absorptionLumen.rising,$whenCondition10,$whenCondition9,$whenCondition8,$whenCondition7,$whenCondition6,$PRE.patient4.central.rising,$PRE.patient4.dose.pulse.count,$PRE.patient4.dose.pulse.T_start,$PRE.patient4.dose.absorptionLumen.rising,patient4.CYP2C19.status,patient4.SLC22A2.status,patient4.central.rising,patient4.dose.pulse.count,patient4.dose.pulse.T_start,patient4.dose.absorptionLumen.rising,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1) * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (209): * Single equations (assignments): 189 * Array equations: 0 * Algorithm blocks: 20 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of prepare postOptimizeDAE: time 0.0008418/0.04149, allocations: 0.9264 MB / 0.6951 GB, free: 4.129 MB / 0.5262 GB Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0006236/0.04212, allocations: 442.8 kB / 0.6955 GB, free: 3.965 MB / 0.5262 GB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0001578/0.04227, allocations: 140.4 kB / 0.6957 GB, free: 3.871 MB / 0.5262 GB Notification: Performance of postOpt inlineArrayEqn (simulation): time 1.625e-05/0.04229, allocations: 14.5 kB / 0.6957 GB, free: 3.871 MB / 0.5262 GB Notification: Performance of postOpt constantLinearSystem (simulation): time 2.874e-05/0.04232, allocations: 1.406 kB / 0.6957 GB, free: 3.871 MB / 0.5262 GB Notification: Performance of postOpt simplifysemiLinear (simulation): time 1.735e-05/0.04234, allocations: 7.844 kB / 0.6957 GB, free: 3.871 MB / 0.5262 GB Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.003799/0.04614, allocations: 3.97 MB / 0.6996 GB, free: 244 kB / 0.5262 GB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 5.59e-06/0.04614, allocations: 0 / 0.6996 GB, free: 244 kB / 0.5262 GB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0006158/0.04676, allocations: 227.7 kB / 0.6998 GB, free: 16 kB / 0.5262 GB Notification: Performance of postOpt tearingSystem (simulation): time 8.847e-06/0.04677, allocations: 8 kB / 0.6998 GB, free: 8 kB / 0.5262 GB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 0.0001281/0.04689, allocations: 67.97 kB / 0.6999 GB, free: 15.94 MB / 0.5418 GB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 1.09e-05/0.0469, allocations: 11.92 kB / 0.6999 GB, free: 15.93 MB / 0.5418 GB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 5.16e-06/0.04691, allocations: 4 kB / 0.6999 GB, free: 15.93 MB / 0.5418 GB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.003391/0.0503, allocations: 4.015 MB / 0.7038 GB, free: 11.59 MB / 0.5418 GB Notification: Performance of postOpt removeConstants (simulation): time 0.0006817/0.05098, allocations: 322.6 kB / 0.7041 GB, free: 11.28 MB / 0.5418 GB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0002355/0.05122, allocations: 68 kB / 0.7042 GB, free: 11.21 MB / 0.5418 GB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0004531/0.05167, allocations: 67.91 kB / 0.7042 GB, free: 11.15 MB / 0.5418 GB Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0002287/0.0519, allocations: 155.6 kB / 0.7044 GB, free: 11 MB / 0.5418 GB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 0.0001993/0.0521, allocations: 236.2 kB / 0.7046 GB, free: 10.77 MB / 0.5418 GB Notification: Performance of sorting global known variables: time 0.000574/0.05267, allocations: 0.5439 MB / 0.7051 GB, free: 10.21 MB / 0.5418 GB Notification: Performance of sort global known variables: time 7e-08/0.05267, allocations: 0 / 0.7051 GB, free: 10.21 MB / 0.5418 GB Notification: Performance of remove unused functions: time 0.001206/0.05388, allocations: 372 kB / 0.7055 GB, free: 9.852 MB / 0.5418 GB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 5 * Number of states: 28 (patient4.dose.TotalCumulativeMass,patient4.dose.absorptionLumen.C,patient4.dose.absorptionLumen.AUC,patient4.dose.variableDose.TotalCumulativeMass,patient4.central.C,patient4.central.AUC,patient4.elim.MExc,patient_citalopram_CYP2C19_2.dose.TotalCumulativeMass,patient_citalopram_CYP2C19_2.dose.absorptionLumen.C,patient_citalopram_CYP2C19_2.dose.absorptionLumen.AUC,patient_citalopram_CYP2C19_2.dose.variableDose.TotalCumulativeMass,patient_citalopram_CYP2C19_2.central.C,patient_citalopram_CYP2C19_2.central.AUC,patient_citalopram_CYP2C19_2.elim.MExc,patient2.dose.TotalCumulativeMass,patient2.dose.absorptionLumen.C,patient2.dose.absorptionLumen.AUC,patient2.dose.variableDose.TotalCumulativeMass,patient2.central.C,patient2.central.AUC,patient2.elim.MExc,patient_citalopram_normal.dose.TotalCumulativeMass,patient_citalopram_normal.dose.absorptionLumen.C,patient_citalopram_normal.dose.absorptionLumen.AUC,patient_citalopram_normal.dose.variableDose.TotalCumulativeMass,patient_citalopram_normal.central.C,patient_citalopram_normal.central.AUC,patient_citalopram_normal.elim.MExc) * Number of discrete variables: 60 ($whenCondition1,$whenCondition2,$whenCondition3,$whenCondition4,$whenCondition5,patient4.dose.absorptionLumen.Cmax,patient4.dose.absorptionLumen.Cmin,patient4.dose.absorptionLumen.rising,patient4.dose.pulse.T_start,patient4.dose.pulse.count,patient4.central.Cmax,patient4.central.Cmin,patient4.central.rising,patient4.SLC22A2.status,patient4.CYP2C19.status,$whenCondition6,$whenCondition7,$whenCondition8,$whenCondition9,$whenCondition10,patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmax,patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmin,patient_citalopram_CYP2C19_2.dose.absorptionLumen.rising,patient_citalopram_CYP2C19_2.dose.pulse.T_start,patient_citalopram_CYP2C19_2.dose.pulse.count,patient_citalopram_CYP2C19_2.central.Cmax,patient_citalopram_CYP2C19_2.central.Cmin,patient_citalopram_CYP2C19_2.central.rising,patient_citalopram_CYP2C19_2.SLC22A2.status,patient_citalopram_CYP2C19_2.CYP2C19.status,$whenCondition11,$whenCondition12,$whenCondition13,$whenCondition14,$whenCondition15,patient2.dose.absorptionLumen.Cmax,patient2.dose.absorptionLumen.Cmin,patient2.dose.absorptionLumen.rising,patient2.dose.pulse.T_start,patient2.dose.pulse.count,patient2.central.Cmax,patient2.central.Cmin,patient2.central.rising,patient2.SLC22A2.status,patient2.CYP2C19.status,$whenCondition16,$whenCondition17,$whenCondition18,$whenCondition19,$whenCondition20,patient_citalopram_normal.dose.absorptionLumen.Cmax,patient_citalopram_normal.dose.absorptionLumen.Cmin,patient_citalopram_normal.dose.absorptionLumen.rising,patient_citalopram_normal.dose.pulse.T_start,patient_citalopram_normal.dose.pulse.count,patient_citalopram_normal.central.Cmax,patient_citalopram_normal.central.Cmin,patient_citalopram_normal.central.rising,patient_citalopram_normal.SLC22A2.status,patient_citalopram_normal.CYP2C19.status) * Number of discrete states: 52 (patient_citalopram_normal.dose.pulse.count,patient_citalopram_normal.SLC22A2.status,patient_citalopram_normal.CYP2C19.status,patient_citalopram_normal.dose.absorptionLumen.Cmin,$whenCondition20,patient_citalopram_normal.dose.absorptionLumen.Cmax,$whenCondition19,patient_citalopram_normal.dose.absorptionLumen.rising,patient_citalopram_normal.central.Cmin,$whenCondition18,patient_citalopram_normal.central.Cmax,$whenCondition17,patient_citalopram_normal.central.rising,patient2.dose.pulse.count,patient2.SLC22A2.status,patient2.CYP2C19.status,patient2.dose.absorptionLumen.Cmin,$whenCondition15,patient2.dose.absorptionLumen.Cmax,$whenCondition14,patient2.dose.absorptionLumen.rising,patient2.central.Cmin,$whenCondition13,patient2.central.Cmax,$whenCondition12,patient2.central.rising,patient_citalopram_CYP2C19_2.dose.pulse.count,patient_citalopram_CYP2C19_2.SLC22A2.status,patient_citalopram_CYP2C19_2.CYP2C19.status,patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmin,$whenCondition10,patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmax,$whenCondition9,patient_citalopram_CYP2C19_2.dose.absorptionLumen.rising,patient_citalopram_CYP2C19_2.central.Cmin,$whenCondition8,patient_citalopram_CYP2C19_2.central.Cmax,$whenCondition7,patient_citalopram_CYP2C19_2.central.rising,patient4.dose.pulse.count,patient4.SLC22A2.status,patient4.CYP2C19.status,patient4.dose.absorptionLumen.Cmin,$whenCondition5,patient4.dose.absorptionLumen.Cmax,$whenCondition4,patient4.dose.absorptionLumen.rising,patient4.central.Cmin,$whenCondition3,patient4.central.Cmax,$whenCondition2,patient4.central.rising) * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (133): * Single equations (assignments): 109 * Array equations: 0 * Algorithm blocks: 16 * Record equations: 0 * When equations: 8 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of Backend phase and start with SimCode phase: time 0.000401/0.05428, allocations: 287.5 kB / 0.7058 GB, free: 9.566 MB / 0.5418 GB Notification: Performance of simCode: created initialization part: time 0.002678/0.05696, allocations: 3.153 MB / 0.7089 GB, free: 5.953 MB / 0.5418 GB Notification: Performance of simCode: created event and clocks part: time 3.276e-06/0.05696, allocations: 4.125 kB / 0.7089 GB, free: 5.949 MB / 0.5418 GB Notification: Performance of simCode: created simulation system equations: time 0.001649/0.05861, allocations: 1.898 MB / 0.7107 GB, free: 3.75 MB / 0.5418 GB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.001331/0.05994, allocations: 405.1 kB / 0.7111 GB, free: 3.395 MB / 0.5418 GB Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.004739/0.06468, allocations: 3.908 MB / 0.7149 GB, free: 15.43 MB / 0.5574 GB Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0002272/0.06491, allocations: 302.7 kB / 0.7152 GB, free: 15.11 MB / 0.5574 GB Notification: Performance of simCode: alias equations: time 0.0004087/0.06532, allocations: 118.9 kB / 0.7153 GB, free: 15 MB / 0.5574 GB Notification: Performance of simCode: all other stuff during SimCode phase: time 0.000168/0.06548, allocations: 96.48 kB / 0.7154 GB, free: 14.9 MB / 0.5574 GB Notification: Performance of SimCode: time 1.263e-06/0.06548, allocations: 0 / 0.7154 GB, free: 14.9 MB / 0.5574 GB Notification: Performance of Templates: time 0.02762/0.09311, allocations: 22.92 MB / 0.7378 GB, free: 9.113 MB / 0.573 GB " [Timeout remaining time 660] make -j1 -f Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.makefile [Timeout 660] (rm -f Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.sim & ./Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment -abortSlowSimulation -alarm=240 -lv LOG_STATS > Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.pipe 2>&1) [Timeout 240] [Calling sys.exit(0), Time elapsed: 5.711963492911309]