Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.00102/0.00102, allocations: 93.06 kB / 19.65 MB, free: 276 kB / 13.93 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001717/0.001717, allocations: 165 kB / 23.02 MB, free: 1.551 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.02/1.02, allocations: 177.1 MB / 203.4 MB, free: 5.613 MB / 186.7 MB " [Timeout remaining time 179] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180] "[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory. Missing names are: Paracetamol_Experiment Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.599/1.599, allocations: 273.5 MB / 0.5209 GB, free: 14.86 MB / 458.7 MB " [Timeout remaining time 178] Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: translateModel(Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI,tolerance=1e-09,outputFormat="empty",numberOfIntervals=86400,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI") translateModel(Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI,tolerance=1e-09,outputFormat="empty",numberOfIntervals=86400,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI") [Timeout 660] "Notification: Performance of FrontEnd - loaded program: time 3.156e-06/3.156e-06, allocations: 0 / 0.647 GB, free: 38.7 MB / 0.5262 GB Notification: Performance of FrontEnd - Absyn->SCode: time 3.259e-05/3.575e-05, allocations: 2.312 kB / 0.647 GB, free: 38.7 MB / 0.5262 GB Notification: Performance of NFInst.instantiate(Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI): time 0.005258/0.005294, allocations: 6.887 MB / 0.6537 GB, free: 34.18 MB / 0.5262 GB Notification: Performance of NFInst.instExpressions: time 0.001811/0.007105, allocations: 1.292 MB / 0.6549 GB, free: 33.29 MB / 0.5262 GB Notification: Performance of NFInst.updateImplicitVariability: time 0.0002643/0.007369, allocations: 7.156 kB / 0.6549 GB, free: 33.29 MB / 0.5262 GB Notification: Performance of NFTyping.typeComponents: time 0.0002166/0.007586, allocations: 111.8 kB / 0.6551 GB, free: 33.22 MB / 0.5262 GB Notification: Performance of NFTyping.typeBindings: time 0.0004741/0.00806, allocations: 340 kB / 0.6554 GB, free: 32.98 MB / 0.5262 GB Notification: Performance of NFTyping.typeClassSections: time 0.0004694/0.008529, allocations: 289.6 kB / 0.6557 GB, free: 32.79 MB / 0.5262 GB Notification: Performance of NFFlatten.flatten: time 0.001045/0.009574, allocations: 1.22 MB / 0.6568 GB, free: 32.09 MB / 0.5262 GB Notification: Performance of NFFlatten.resolveConnections: time 0.0003136/0.009888, allocations: 174.7 kB / 0.657 GB, free: 31.98 MB / 0.5262 GB Notification: Performance of NFEvalConstants.evaluate: time 0.0006713/0.01056, allocations: 0.6207 MB / 0.6576 GB, free: 31.7 MB / 0.5262 GB Notification: Performance of NFSimplifyModel.simplify: time 0.0004645/0.01102, allocations: 362.5 kB / 0.658 GB, free: 31.57 MB / 0.5262 GB Notification: Performance of NFPackage.collectConstants: time 0.0001205/0.01114, allocations: 111.3 kB / 0.6581 GB, free: 31.57 MB / 0.5262 GB Notification: Performance of NFFlatten.collectFunctions: time 0.0001502/0.01129, allocations: 110.6 kB / 0.6582 GB, free: 31.57 MB / 0.5262 GB Notification: Performance of NFScalarize.scalarize: time 8.832e-05/0.01138, allocations: 203 kB / 0.6584 GB, free: 31.42 MB / 0.5262 GB Notification: Performance of NFVerifyModel.verify: time 0.0002903/0.01167, allocations: 366.3 kB / 0.6587 GB, free: 31.25 MB / 0.5262 GB Notification: Performance of NFConvertDAE.convert: time 0.0006527/0.01233, allocations: 0.7162 MB / 0.6594 GB, free: 30.86 MB / 0.5262 GB Notification: Performance of FrontEnd - DAE generated: time 4.148e-06/0.01233, allocations: 4.75 kB / 0.6594 GB, free: 30.86 MB / 0.5262 GB Notification: Performance of FrontEnd: time 1.472e-06/0.01233, allocations: 0 / 0.6594 GB, free: 30.86 MB / 0.5262 GB Notification: Performance of Transformations before backend: time 1.72e-05/0.01235, allocations: 0 / 0.6594 GB, free: 30.86 MB / 0.5262 GB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 144 * Number of variables: 144 Notification: Performance of Generate backend data structure: time 0.001503/0.01385, allocations: 1.411 MB / 0.6608 GB, free: 29.74 MB / 0.5262 GB Notification: Performance of prepare preOptimizeDAE: time 3.73e-05/0.01389, allocations: 13.72 kB / 0.6608 GB, free: 29.74 MB / 0.5262 GB Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0001821/0.01407, allocations: 142.3 kB / 0.6609 GB, free: 29.68 MB / 0.5262 GB Notification: Performance of preOpt evaluateParameters (simulation): time 0.0004582/0.01453, allocations: 438.2 kB / 0.6614 GB, free: 29.34 MB / 0.5262 GB Notification: Performance of preOpt simplifyIfEquations (simulation): time 3.177e-05/0.01456, allocations: 47.28 kB / 0.6614 GB, free: 29.32 MB / 0.5262 GB Notification: Performance of preOpt expandDerOperator (simulation): time 8.529e-05/0.01465, allocations: 75.11 kB / 0.6615 GB, free: 29.3 MB / 0.5262 GB Notification: Performance of preOpt clockPartitioning (simulation): time 0.000772/0.01542, allocations: 0.6881 MB / 0.6622 GB, free: 28.87 MB / 0.5262 GB Notification: Performance of preOpt findStateOrder (simulation): time 3.285e-05/0.01545, allocations: 15.2 kB / 0.6622 GB, free: 28.86 MB / 0.5262 GB Notification: Performance of preOpt replaceEdgeChange (simulation): time 4.141e-05/0.01549, allocations: 23 kB / 0.6622 GB, free: 28.85 MB / 0.5262 GB Notification: Performance of preOpt inlineArrayEqn (simulation): time 2.041e-05/0.01551, allocations: 17.94 kB / 0.6622 GB, free: 28.84 MB / 0.5262 GB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0005248/0.01604, allocations: 473.4 kB / 0.6627 GB, free: 28.61 MB / 0.5262 GB Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.001537/0.01757, allocations: 1.942 MB / 0.6646 GB, free: 27.16 MB / 0.5262 GB Notification: Performance of preOpt comSubExp (simulation): time 0.0007108/0.01829, allocations: 0.5716 MB / 0.6651 GB, free: 26.8 MB / 0.5262 GB Notification: Performance of preOpt resolveLoops (simulation): time 0.0002655/0.01855, allocations: 340.4 kB / 0.6654 GB, free: 26.54 MB / 0.5262 GB Notification: Performance of preOpt evalFunc (simulation): time 4.661e-05/0.0186, allocations: 16.56 kB / 0.6655 GB, free: 26.54 MB / 0.5262 GB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.0005949/0.01919, allocations: 0.9667 MB / 0.6664 GB, free: 25.79 MB / 0.5262 GB Notification: Performance of pre-optimization done (n=99): time 1.714e-06/0.01919, allocations: 0 / 0.6664 GB, free: 25.79 MB / 0.5262 GB Notification: Performance of matching and sorting (n=105): time 0.002615/0.02181, allocations: 2.958 MB / 0.6693 GB, free: 23.73 MB / 0.5262 GB Notification: Performance of inlineWhenForInitialization (initialization): time 0.0001232/0.02193, allocations: 0.5983 MB / 0.6699 GB, free: 23.03 MB / 0.5262 GB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0003968/0.02233, allocations: 0.5188 MB / 0.6704 GB, free: 22.76 MB / 0.5262 GB Notification: Performance of collectPreVariables (initialization): time 5.608e-05/0.02239, allocations: 63.11 kB / 0.6704 GB, free: 22.71 MB / 0.5262 GB Notification: Performance of collectInitialEqns (initialization): time 0.0001337/0.02252, allocations: 355.2 kB / 0.6708 GB, free: 22.41 MB / 0.5262 GB Notification: Performance of collectInitialBindings (initialization): time 0.0001625/0.02268, allocations: 351.9 kB / 0.6711 GB, free: 22.13 MB / 0.5262 GB Notification: Performance of simplifyInitialFunctions (initialization): time 0.0001913/0.02287, allocations: 188.2 kB / 0.6713 GB, free: 22.04 MB / 0.5262 GB Notification: Performance of setup shared object (initialization): time 0.0001019/0.02297, allocations: 0.5658 MB / 0.6718 GB, free: 21.51 MB / 0.5262 GB Notification: Performance of preBalanceInitialSystem (initialization): time 0.0003463/0.02332, allocations: 456.4 kB / 0.6723 GB, free: 21.17 MB / 0.5262 GB Notification: Performance of partitionIndependentBlocks (initialization): time 0.0004334/0.02375, allocations: 0.8647 MB / 0.6731 GB, free: 20.27 MB / 0.5262 GB Notification: Performance of analyzeInitialSystem (initialization): time 0.0009844/0.02474, allocations: 1.557 MB / 0.6746 GB, free: 18.84 MB / 0.5262 GB Notification: Performance of solveInitialSystemEqSystem (initialization): time 9.398e-06/0.02475, allocations: 4.125 kB / 0.6746 GB, free: 18.84 MB / 0.5262 GB Notification: Performance of matching and sorting (n=159) (initialization): time 0.00118/0.02593, allocations: 1.374 MB / 0.676 GB, free: 17.95 MB / 0.5262 GB Notification: Performance of prepare postOptimizeDAE: time 6.941e-05/0.026, allocations: 265 kB / 0.6762 GB, free: 17.66 MB / 0.5262 GB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 1.213e-05/0.02601, allocations: 8.5 kB / 0.6763 GB, free: 17.66 MB / 0.5262 GB Notification: Performance of postOpt tearingSystem (initialization): time 2.878e-05/0.02604, allocations: 14.09 kB / 0.6763 GB, free: 17.66 MB / 0.5262 GB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0004992/0.02654, allocations: 255.6 kB / 0.6765 GB, free: 17.64 MB / 0.5262 GB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 1.829e-05/0.02656, allocations: 22.56 kB / 0.6765 GB, free: 17.63 MB / 0.5262 GB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0003222/0.02688, allocations: 58.08 kB / 0.6766 GB, free: 17.61 MB / 0.5262 GB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 5.46e-05/0.02693, allocations: 47.62 kB / 0.6766 GB, free: 17.6 MB / 0.5262 GB Warning: Assuming fixed start value for the following 30 variables: pK_lower.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real pK_lower.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real pK_lower.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real pK_lower.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real pK_1C_Lithium_upper.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real pK_1C_Lithium_upper.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real pK_1C_Lithium_upper.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real pK_1C_Lithium_upper.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real pK_1C_Lithium.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real pK_1C_Lithium.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real pK_1C_Lithium.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real pK_1C_Lithium.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real pK_1C_Lithium.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium_upper.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium_upper.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_lower.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_lower.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_lower.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_lower.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean pK_1C_Lithium.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean pK_1C_Lithium_upper.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean pK_lower.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean pK_lower.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 36 * Number of states: 0 () * Number of discrete variables: 63 ($PRE.pK_1C_Lithium.central.Cmin,pK_1C_Lithium.central.Cmin,$PRE.pK_1C_Lithium.central.Cmax,pK_1C_Lithium.central.Cmax,$PRE.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,$PRE.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,$PRE.pK_1C_Lithium_upper.central.Cmin,pK_1C_Lithium_upper.central.Cmin,$PRE.pK_1C_Lithium_upper.central.Cmax,pK_1C_Lithium_upper.central.Cmax,$PRE.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,$PRE.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,$PRE.pK_lower.central.Cmin,pK_lower.central.Cmin,$PRE.pK_lower.central.Cmax,pK_lower.central.Cmax,$PRE.pK_lower.periodicDose.absorptionLumen.Cmin,pK_lower.periodicDose.absorptionLumen.Cmin,$PRE.pK_lower.periodicDose.absorptionLumen.Cmax,pK_lower.periodicDose.absorptionLumen.Cmax,$PRE.pK_1C_Lithium.periodicDose.pulse.count,$PRE.pK_1C_Lithium.periodicDose.pulse.T_start,$PRE.pK_1C_Lithium.periodicDose.absorptionLumen.rising,$PRE.pK_1C_Lithium.central.rising,pK_1C_Lithium.periodicDose.pulse.count,pK_1C_Lithium.periodicDose.pulse.T_start,pK_1C_Lithium.periodicDose.absorptionLumen.rising,pK_1C_Lithium.central.rising,$whenCondition15,$whenCondition14,$whenCondition13,$whenCondition12,$whenCondition11,$PRE.pK_1C_Lithium_upper.periodicDose.pulse.count,$PRE.pK_1C_Lithium_upper.periodicDose.pulse.T_start,$PRE.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,$PRE.pK_1C_Lithium_upper.central.rising,pK_1C_Lithium_upper.periodicDose.pulse.count,pK_1C_Lithium_upper.periodicDose.pulse.T_start,pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,pK_1C_Lithium_upper.central.rising,$whenCondition10,$whenCondition9,$whenCondition8,$whenCondition7,$whenCondition6,$PRE.pK_lower.periodicDose.pulse.count,$PRE.pK_lower.periodicDose.pulse.T_start,$PRE.pK_lower.periodicDose.absorptionLumen.rising,$PRE.pK_lower.central.rising,pK_lower.periodicDose.pulse.count,pK_lower.periodicDose.pulse.T_start,pK_lower.periodicDose.absorptionLumen.rising,pK_lower.central.rising,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1) * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (150): * Single equations (assignments): 141 * Array equations: 0 * Algorithm blocks: 9 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of prepare postOptimizeDAE: time 0.0004007/0.02733, allocations: 0.5541 MB / 0.6772 GB, free: 17.13 MB / 0.5262 GB Notification: Performance of postOpt lateInlineFunction (simulation): time 0.000118/0.02745, allocations: 134.2 kB / 0.6773 GB, free: 17.07 MB / 0.5262 GB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 8.314e-05/0.02753, allocations: 84.77 kB / 0.6774 GB, free: 17.01 MB / 0.5262 GB Notification: Performance of postOpt inlineArrayEqn (simulation): time 6.892e-06/0.02754, allocations: 8.594 kB / 0.6774 GB, free: 17.01 MB / 0.5262 GB Notification: Performance of postOpt constantLinearSystem (simulation): time 1.293e-05/0.02755, allocations: 6.188 kB / 0.6774 GB, free: 17.01 MB / 0.5262 GB Notification: Performance of postOpt simplifysemiLinear (simulation): time 8.496e-06/0.02756, allocations: 5.078 kB / 0.6774 GB, free: 17.01 MB / 0.5262 GB Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.001696/0.02926, allocations: 2.139 MB / 0.6795 GB, free: 15.63 MB / 0.5262 GB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 3.477e-06/0.02926, allocations: 1.438 kB / 0.6795 GB, free: 15.63 MB / 0.5262 GB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0005254/0.02979, allocations: 163.2 kB / 0.6796 GB, free: 15.61 MB / 0.5262 GB Notification: Performance of postOpt tearingSystem (simulation): time 7.765e-06/0.0298, allocations: 4.594 kB / 0.6797 GB, free: 15.61 MB / 0.5262 GB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 6.732e-05/0.02986, allocations: 36.12 kB / 0.6797 GB, free: 15.6 MB / 0.5262 GB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 4.308e-06/0.02987, allocations: 4.344 kB / 0.6797 GB, free: 15.6 MB / 0.5262 GB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 3.076e-06/0.02987, allocations: 12.55 kB / 0.6797 GB, free: 15.59 MB / 0.5262 GB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.001427/0.0313, allocations: 1.93 MB / 0.6816 GB, free: 14.31 MB / 0.5262 GB Notification: Performance of postOpt removeConstants (simulation): time 0.0002551/0.03155, allocations: 171.3 kB / 0.6817 GB, free: 14.21 MB / 0.5262 GB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0001131/0.03167, allocations: 50.33 kB / 0.6818 GB, free: 14.18 MB / 0.5262 GB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0002675/0.03193, allocations: 42.19 kB / 0.6818 GB, free: 14.17 MB / 0.5262 GB Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0001688/0.0321, allocations: 95.03 kB / 0.6819 GB, free: 14.14 MB / 0.5262 GB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 4.478e-05/0.03215, allocations: 36.69 kB / 0.682 GB, free: 14.14 MB / 0.5262 GB Notification: Performance of sorting global known variables: time 0.0002686/0.03242, allocations: 345.5 kB / 0.6823 GB, free: 13.97 MB / 0.5262 GB Notification: Performance of sort global known variables: time 7e-08/0.03242, allocations: 4 kB / 0.6823 GB, free: 13.96 MB / 0.5262 GB Notification: Performance of remove unused functions: time 0.0005294/0.03294, allocations: 249.9 kB / 0.6825 GB, free: 13.93 MB / 0.5262 GB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 3 * Number of states: 21 (pK_lower.central.C,pK_lower.central.AUC,pK_lower.elim.MExc,pK_lower.periodicDose.TotalCumulativeMass,pK_lower.periodicDose.absorptionLumen.C,pK_lower.periodicDose.absorptionLumen.AUC,pK_lower.periodicDose.variableDose.TotalCumulativeMass,pK_1C_Lithium_upper.central.C,pK_1C_Lithium_upper.central.AUC,pK_1C_Lithium_upper.elim.MExc,pK_1C_Lithium_upper.periodicDose.TotalCumulativeMass,pK_1C_Lithium_upper.periodicDose.absorptionLumen.C,pK_1C_Lithium_upper.periodicDose.absorptionLumen.AUC,pK_1C_Lithium_upper.periodicDose.variableDose.TotalCumulativeMass,pK_1C_Lithium.central.C,pK_1C_Lithium.central.AUC,pK_1C_Lithium.elim.MExc,pK_1C_Lithium.periodicDose.TotalCumulativeMass,pK_1C_Lithium.periodicDose.absorptionLumen.C,pK_1C_Lithium.periodicDose.absorptionLumen.AUC,pK_1C_Lithium.periodicDose.variableDose.TotalCumulativeMass) * Number of discrete variables: 39 ($whenCondition1,$whenCondition2,$whenCondition3,$whenCondition4,$whenCondition5,pK_lower.central.Cmax,pK_lower.central.Cmin,pK_lower.central.rising,pK_lower.periodicDose.absorptionLumen.Cmax,pK_lower.periodicDose.absorptionLumen.Cmin,pK_lower.periodicDose.absorptionLumen.rising,pK_lower.periodicDose.pulse.T_start,pK_lower.periodicDose.pulse.count,$whenCondition6,$whenCondition7,$whenCondition8,$whenCondition9,$whenCondition10,pK_1C_Lithium_upper.central.Cmax,pK_1C_Lithium_upper.central.Cmin,pK_1C_Lithium_upper.central.rising,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,pK_1C_Lithium_upper.periodicDose.pulse.T_start,pK_1C_Lithium_upper.periodicDose.pulse.count,$whenCondition11,$whenCondition12,$whenCondition13,$whenCondition14,$whenCondition15,pK_1C_Lithium.central.Cmax,pK_1C_Lithium.central.Cmin,pK_1C_Lithium.central.rising,pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,pK_1C_Lithium.periodicDose.absorptionLumen.rising,pK_1C_Lithium.periodicDose.pulse.T_start,pK_1C_Lithium.periodicDose.pulse.count) * Number of discrete states: 33 (pK_1C_Lithium.periodicDose.pulse.count,pK_1C_Lithium.central.Cmin,$whenCondition15,pK_1C_Lithium.central.Cmax,$whenCondition14,pK_1C_Lithium.central.rising,pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,$whenCondition13,pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,$whenCondition12,pK_1C_Lithium.periodicDose.absorptionLumen.rising,pK_1C_Lithium_upper.periodicDose.pulse.count,pK_1C_Lithium_upper.central.Cmin,$whenCondition10,pK_1C_Lithium_upper.central.Cmax,$whenCondition9,pK_1C_Lithium_upper.central.rising,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,$whenCondition8,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,$whenCondition7,pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,pK_lower.periodicDose.pulse.count,pK_lower.central.Cmin,$whenCondition5,pK_lower.central.Cmax,$whenCondition4,pK_lower.central.rising,pK_lower.periodicDose.absorptionLumen.Cmin,$whenCondition3,pK_lower.periodicDose.absorptionLumen.Cmax,$whenCondition2,pK_lower.periodicDose.absorptionLumen.rising) * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (87): * Single equations (assignments): 75 * Array equations: 0 * Algorithm blocks: 6 * Record equations: 0 * When equations: 6 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of Backend phase and start with SimCode phase: time 0.0001513/0.0331, allocations: 186.5 kB / 0.6827 GB, free: 13.8 MB / 0.5262 GB Notification: Performance of simCode: created initialization part: time 0.0009888/0.03408, allocations: 1.501 MB / 0.6842 GB, free: 12.62 MB / 0.5262 GB Notification: Performance of simCode: created event and clocks part: time 2.174e-06/0.03409, allocations: 0 / 0.6842 GB, free: 12.62 MB / 0.5262 GB Notification: Performance of simCode: created simulation system equations: time 0.000592/0.03468, allocations: 0.8219 MB / 0.685 GB, free: 11.96 MB / 0.5262 GB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0008916/0.03557, allocations: 288.3 kB / 0.6853 GB, free: 11.88 MB / 0.5262 GB Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.003133/0.0387, allocations: 2.291 MB / 0.6875 GB, free: 10.4 MB / 0.5262 GB Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0001364/0.03884, allocations: 174.4 kB / 0.6877 GB, free: 10.32 MB / 0.5262 GB Notification: Performance of simCode: alias equations: time 0.0003019/0.03914, allocations: 93.19 kB / 0.6877 GB, free: 10.3 MB / 0.5262 GB Notification: Performance of simCode: all other stuff during SimCode phase: time 0.000142/0.03928, allocations: 68.62 kB / 0.6878 GB, free: 10.29 MB / 0.5262 GB Notification: Performance of SimCode: time 7.32e-07/0.03929, allocations: 1.125 kB / 0.6878 GB, free: 10.29 MB / 0.5262 GB Notification: Performance of Templates: time 0.01493/0.05422, allocations: 14.09 MB / 0.7016 GB, free: 252 kB / 0.5262 GB " [Timeout remaining time 660] make -j1 -f Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.makefile [Timeout 660] (rm -f Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.sim & ./Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI -abortSlowSimulation -alarm=240 -lv LOG_STATS > Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.pipe 2>&1) [Timeout 240] [Calling sys.exit(0), Time elapsed: 5.297392790205777]