Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.0009633/0.0009633, allocations: 93.06 kB / 19.65 MB, free: 280 kB / 13.93 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.0009787/0.0009787, allocations: 165 kB / 23.02 MB, free: 1.551 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.951/0.951, allocations: 177.1 MB / 203.4 MB, free: 5.633 MB / 186.7 MB " [Timeout remaining time 179] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180] "[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory. Missing names are: Paracetamol_Experiment Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.616/1.616, allocations: 273.5 MB / 0.5209 GB, free: 14.74 MB / 458.7 MB " [Timeout remaining time 178] Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: translateModel(Pharmacolibrary.Examples.PK_Lithium.PGx_experiment,tolerance=1e-06,outputFormat="empty",numberOfIntervals=500,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment") translateModel(Pharmacolibrary.Examples.PK_Lithium.PGx_experiment,tolerance=1e-06,outputFormat="empty",numberOfIntervals=500,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment") [Timeout 660] "Notification: Performance of FrontEnd - loaded program: time 3.176e-06/3.176e-06, allocations: 0 / 0.6469 GB, free: 38.53 MB / 0.5262 GB Notification: Performance of FrontEnd - Absyn->SCode: time 2.976e-05/3.293e-05, allocations: 2.312 kB / 0.6469 GB, free: 38.52 MB / 0.5262 GB Notification: Performance of NFInst.instantiate(Pharmacolibrary.Examples.PK_Lithium.PGx_experiment): time 0.0129/0.01293, allocations: 11.17 MB / 0.6579 GB, free: 31.23 MB / 0.5262 GB Notification: Performance of NFInst.instExpressions: time 0.006123/0.01905, allocations: 2.261 MB / 0.6601 GB, free: 29.61 MB / 0.5262 GB Notification: Performance of NFInst.updateImplicitVariability: time 0.001132/0.02018, allocations: 18.12 kB / 0.6601 GB, free: 29.61 MB / 0.5262 GB Notification: Performance of NFTyping.typeComponents: time 0.000462/0.02065, allocations: 227.4 kB / 0.6603 GB, free: 29.47 MB / 0.5262 GB Notification: Performance of NFTyping.typeBindings: time 0.001295/0.02194, allocations: 0.6881 MB / 0.661 GB, free: 28.96 MB / 0.5262 GB Notification: Performance of NFTyping.typeClassSections: time 0.00109/0.02303, allocations: 0.6337 MB / 0.6616 GB, free: 28.5 MB / 0.5262 GB Notification: Performance of NFFlatten.flatten: time 0.002492/0.02552, allocations: 2.675 MB / 0.6642 GB, free: 26.94 MB / 0.5262 GB Notification: Performance of NFFlatten.resolveConnections: time 0.0005791/0.0261, allocations: 365.9 kB / 0.6645 GB, free: 26.7 MB / 0.5262 GB Notification: Performance of NFEvalConstants.evaluate: time 0.001475/0.02758, allocations: 1.356 MB / 0.6659 GB, free: 26.01 MB / 0.5262 GB Notification: Performance of NFSimplifyModel.simplify: time 0.001177/0.02875, allocations: 0.7462 MB / 0.6666 GB, free: 25.71 MB / 0.5262 GB Notification: Performance of NFPackage.collectConstants: time 0.0003933/0.02915, allocations: 279.1 kB / 0.6669 GB, free: 25.71 MB / 0.5262 GB Notification: Performance of NFFlatten.collectFunctions: time 0.0003602/0.02951, allocations: 282.2 kB / 0.6671 GB, free: 25.71 MB / 0.5262 GB Notification: Performance of NFScalarize.scalarize: time 0.0001937/0.0297, allocations: 449.8 kB / 0.6676 GB, free: 25.37 MB / 0.5262 GB Notification: Performance of NFVerifyModel.verify: time 0.0009299/0.03063, allocations: 0.762 MB / 0.6683 GB, free: 24.98 MB / 0.5262 GB Notification: Performance of NFConvertDAE.convert: time 0.00137/0.032, allocations: 1.599 MB / 0.6699 GB, free: 24.04 MB / 0.5262 GB Notification: Performance of FrontEnd - DAE generated: time 4.869e-06/0.032, allocations: 0 / 0.6699 GB, free: 24.04 MB / 0.5262 GB Notification: Performance of FrontEnd: time 1.533e-06/0.03201, allocations: 0 / 0.6699 GB, free: 24.04 MB / 0.5262 GB Notification: Performance of Transformations before backend: time 5.352e-05/0.03206, allocations: 0 / 0.6699 GB, free: 24.04 MB / 0.5262 GB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 288 * Number of variables: 288 Notification: Performance of Generate backend data structure: time 0.002712/0.03477, allocations: 2.547 MB / 0.6724 GB, free: 22.12 MB / 0.5262 GB Notification: Performance of prepare preOptimizeDAE: time 4.262e-05/0.03481, allocations: 14.97 kB / 0.6724 GB, free: 22.12 MB / 0.5262 GB Notification: Performance of preOpt normalInlineFunction (simulation): time 0.000372/0.03519, allocations: 281.2 kB / 0.6726 GB, free: 21.99 MB / 0.5262 GB Notification: Performance of preOpt evaluateParameters (simulation): time 0.0009478/0.03613, allocations: 0.8345 MB / 0.6735 GB, free: 21.37 MB / 0.5262 GB Notification: Performance of preOpt simplifyIfEquations (simulation): time 5.75e-05/0.03619, allocations: 93.66 kB / 0.6735 GB, free: 21.33 MB / 0.5262 GB Notification: Performance of preOpt expandDerOperator (simulation): time 0.0001786/0.03637, allocations: 144.4 kB / 0.6737 GB, free: 21.28 MB / 0.5262 GB Notification: Performance of preOpt clockPartitioning (simulation): time 0.001608/0.03798, allocations: 1.342 MB / 0.675 GB, free: 20.45 MB / 0.5262 GB Notification: Performance of preOpt findStateOrder (simulation): time 5.634e-05/0.03803, allocations: 17.91 kB / 0.675 GB, free: 20.45 MB / 0.5262 GB Notification: Performance of preOpt replaceEdgeChange (simulation): time 7.426e-05/0.03811, allocations: 48.47 kB / 0.6751 GB, free: 20.41 MB / 0.5262 GB Notification: Performance of preOpt inlineArrayEqn (simulation): time 2.432e-05/0.03813, allocations: 26.94 kB / 0.6751 GB, free: 20.41 MB / 0.5262 GB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.001126/0.03926, allocations: 0.9376 MB / 0.676 GB, free: 19.93 MB / 0.5262 GB Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.003909/0.04317, allocations: 4.177 MB / 0.6801 GB, free: 16.88 MB / 0.5262 GB Notification: Performance of preOpt comSubExp (simulation): time 0.001527/0.04469, allocations: 1.154 MB / 0.6812 GB, free: 16.13 MB / 0.5262 GB Notification: Performance of preOpt resolveLoops (simulation): time 0.0006047/0.0453, allocations: 0.6718 MB / 0.6819 GB, free: 15.61 MB / 0.5262 GB Notification: Performance of preOpt evalFunc (simulation): time 7.234e-05/0.04537, allocations: 28.92 kB / 0.6819 GB, free: 15.61 MB / 0.5262 GB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.001395/0.04677, allocations: 1.919 MB / 0.6838 GB, free: 14.15 MB / 0.5262 GB Notification: Performance of pre-optimization done (n=198): time 5.4e-06/0.04677, allocations: 0 / 0.6838 GB, free: 14.15 MB / 0.5262 GB Notification: Performance of matching and sorting (n=210): time 0.006569/0.05334, allocations: 6.448 MB / 0.6901 GB, free: 9.625 MB / 0.5262 GB Notification: Performance of inlineWhenForInitialization (initialization): time 0.0002112/0.05355, allocations: 1.179 MB / 0.6912 GB, free: 8.242 MB / 0.5262 GB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.001003/0.05455, allocations: 0.8966 MB / 0.6921 GB, free: 7.852 MB / 0.5262 GB Notification: Performance of collectPreVariables (initialization): time 0.0001245/0.05468, allocations: 102.4 kB / 0.6922 GB, free: 7.777 MB / 0.5262 GB Notification: Performance of collectInitialEqns (initialization): time 0.0003029/0.05498, allocations: 0.5734 MB / 0.6927 GB, free: 7.305 MB / 0.5262 GB Notification: Performance of collectInitialBindings (initialization): time 0.0004093/0.05539, allocations: 0.685 MB / 0.6934 GB, free: 6.754 MB / 0.5262 GB Notification: Performance of simplifyInitialFunctions (initialization): time 0.0005391/0.05593, allocations: 371.2 kB / 0.6938 GB, free: 6.586 MB / 0.5262 GB Notification: Performance of setup shared object (initialization): time 3.591e-05/0.05597, allocations: 482.4 kB / 0.6942 GB, free: 6.113 MB / 0.5262 GB Notification: Performance of preBalanceInitialSystem (initialization): time 0.0007465/0.05671, allocations: 0.8938 MB / 0.6951 GB, free: 5.352 MB / 0.5262 GB Notification: Performance of partitionIndependentBlocks (initialization): time 0.0009786/0.05769, allocations: 1.724 MB / 0.6968 GB, free: 3.445 MB / 0.5262 GB Notification: Performance of analyzeInitialSystem (initialization): time 0.002107/0.0598, allocations: 3.096 MB / 0.6998 GB, free: 400 kB / 0.5262 GB Notification: Performance of solveInitialSystemEqSystem (initialization): time 2.035e-05/0.05982, allocations: 4 kB / 0.6998 GB, free: 396 kB / 0.5262 GB Notification: Performance of matching and sorting (n=318) (initialization): time 0.002756/0.06257, allocations: 2.727 MB / 0.7025 GB, free: 13.43 MB / 0.5418 GB Notification: Performance of prepare postOptimizeDAE: time 0.000201/0.06277, allocations: 0.522 MB / 0.703 GB, free: 12.8 MB / 0.5418 GB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 2.087e-05/0.0628, allocations: 16 kB / 0.703 GB, free: 12.78 MB / 0.5418 GB Notification: Performance of postOpt tearingSystem (initialization): time 4.133e-05/0.06284, allocations: 28 kB / 0.703 GB, free: 12.75 MB / 0.5418 GB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.001033/0.06387, allocations: 499.2 kB / 0.7035 GB, free: 12.27 MB / 0.5418 GB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 2.838e-05/0.0639, allocations: 39.86 kB / 0.7035 GB, free: 12.23 MB / 0.5418 GB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0009489/0.06485, allocations: 119.9 kB / 0.7037 GB, free: 12.11 MB / 0.5418 GB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.000115/0.06496, allocations: 100 kB / 0.7037 GB, free: 12.01 MB / 0.5418 GB Warning: Assuming fixed start value for the following 60 variables: low_clearance.pK_lower.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real low_clearance.pK_lower.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real low_clearance.pK_lower.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real low_clearance.pK_lower.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real low_clearance.pK_1C_Lithium_upper.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real low_clearance.pK_1C_Lithium_upper.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real low_clearance.pK_1C_Lithium_upper.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real low_clearance.pK_1C_Lithium.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real low_clearance.pK_1C_Lithium.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real low_clearance.pK_1C_Lithium.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real normal.pK_lower.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real normal.pK_lower.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real normal.pK_lower.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real normal.pK_lower.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real normal.pK_1C_Lithium_upper.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real normal.pK_1C_Lithium_upper.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real normal.pK_1C_Lithium_upper.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real normal.pK_1C_Lithium.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real normal.pK_1C_Lithium.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real normal.pK_1C_Lithium.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real normal.pK_1C_Lithium.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real normal.pK_1C_Lithium.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium_upper.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium_upper.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_lower.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_lower.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_lower.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_lower.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium_upper.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium_upper.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_lower.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_lower.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_lower.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_lower.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean normal.pK_1C_Lithium.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean normal.pK_1C_Lithium_upper.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean normal.pK_lower.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean normal.pK_lower.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean low_clearance.pK_1C_Lithium.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean low_clearance.pK_1C_Lithium_upper.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean low_clearance.pK_lower.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean low_clearance.pK_lower.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 72 * Number of states: 0 () * Number of discrete variables: 126 ($PRE.normal.pK_1C_Lithium.central.Cmin,normal.pK_1C_Lithium.central.Cmin,$PRE.normal.pK_1C_Lithium.central.Cmax,normal.pK_1C_Lithium.central.Cmax,$PRE.normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,$PRE.normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,$PRE.normal.pK_1C_Lithium_upper.central.Cmin,normal.pK_1C_Lithium_upper.central.Cmin,$PRE.normal.pK_1C_Lithium_upper.central.Cmax,normal.pK_1C_Lithium_upper.central.Cmax,$PRE.normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,$PRE.normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,$PRE.normal.pK_lower.central.Cmin,normal.pK_lower.central.Cmin,$PRE.normal.pK_lower.central.Cmax,normal.pK_lower.central.Cmax,$PRE.normal.pK_lower.periodicDose.absorptionLumen.Cmin,normal.pK_lower.periodicDose.absorptionLumen.Cmin,$PRE.normal.pK_lower.periodicDose.absorptionLumen.Cmax,normal.pK_lower.periodicDose.absorptionLumen.Cmax,$PRE.low_clearance.pK_1C_Lithium.central.Cmin,low_clearance.pK_1C_Lithium.central.Cmin,$PRE.low_clearance.pK_1C_Lithium.central.Cmax,low_clearance.pK_1C_Lithium.central.Cmax,$PRE.low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,$PRE.low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,$PRE.low_clearance.pK_1C_Lithium_upper.central.Cmin,low_clearance.pK_1C_Lithium_upper.central.Cmin,$PRE.low_clearance.pK_1C_Lithium_upper.central.Cmax,low_clearance.pK_1C_Lithium_upper.central.Cmax,$PRE.low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,$PRE.low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,$PRE.low_clearance.pK_lower.central.Cmin,low_clearance.pK_lower.central.Cmin,$PRE.low_clearance.pK_lower.central.Cmax,low_clearance.pK_lower.central.Cmax,$PRE.low_clearance.pK_lower.periodicDose.absorptionLumen.Cmin,low_clearance.pK_lower.periodicDose.absorptionLumen.Cmin,$PRE.low_clearance.pK_lower.periodicDose.absorptionLumen.Cmax,low_clearance.pK_lower.periodicDose.absorptionLumen.Cmax,$PRE.normal.pK_1C_Lithium.periodicDose.pulse.count,$PRE.normal.pK_1C_Lithium.periodicDose.pulse.T_start,$PRE.normal.pK_1C_Lithium.periodicDose.absorptionLumen.rising,$PRE.normal.pK_1C_Lithium.central.rising,normal.pK_1C_Lithium.periodicDose.pulse.count,normal.pK_1C_Lithium.periodicDose.pulse.T_start,normal.pK_1C_Lithium.periodicDose.absorptionLumen.rising,normal.pK_1C_Lithium.central.rising,$whenCondition30,$whenCondition29,$whenCondition28,$whenCondition27,$whenCondition26,$PRE.normal.pK_1C_Lithium_upper.periodicDose.pulse.count,$PRE.normal.pK_1C_Lithium_upper.periodicDose.pulse.T_start,$PRE.normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,$PRE.normal.pK_1C_Lithium_upper.central.rising,normal.pK_1C_Lithium_upper.periodicDose.pulse.count,normal.pK_1C_Lithium_upper.periodicDose.pulse.T_start,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,normal.pK_1C_Lithium_upper.central.rising,$whenCondition25,$whenCondition24,$whenCondition23,$whenCondition22,$whenCondition21,$PRE.normal.pK_lower.periodicDose.pulse.count,$PRE.normal.pK_lower.periodicDose.pulse.T_start,$PRE.normal.pK_lower.periodicDose.absorptionLumen.rising,$PRE.normal.pK_lower.central.rising,normal.pK_lower.periodicDose.pulse.count,normal.pK_lower.periodicDose.pulse.T_start,normal.pK_lower.periodicDose.absorptionLumen.rising,normal.pK_lower.central.rising,$whenCondition20,$whenCondition19,$whenCondition18,$whenCondition17,$whenCondition16,$PRE.low_clearance.pK_1C_Lithium.periodicDose.pulse.count,$PRE.low_clearance.pK_1C_Lithium.periodicDose.pulse.T_start,$PRE.low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.rising,$PRE.low_clearance.pK_1C_Lithium.central.rising,low_clearance.pK_1C_Lithium.periodicDose.pulse.count,low_clearance.pK_1C_Lithium.periodicDose.pulse.T_start,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.rising,low_clearance.pK_1C_Lithium.central.rising,$whenCondition15,$whenCondition14,$whenCondition13,$whenCondition12,$whenCondition11,$PRE.low_clearance.pK_1C_Lithium_upper.periodicDose.pulse.count,$PRE.low_clearance.pK_1C_Lithium_upper.periodicDose.pulse.T_start,$PRE.low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,$PRE.low_clearance.pK_1C_Lithium_upper.central.rising,low_clearance.pK_1C_Lithium_upper.periodicDose.pulse.count,low_clearance.pK_1C_Lithium_upper.periodicDose.pulse.T_start,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,low_clearance.pK_1C_Lithium_upper.central.rising,$whenCondition10,$whenCondition9,$whenCondition8,$whenCondition7,$whenCondition6,$PRE.low_clearance.pK_lower.periodicDose.pulse.count,$PRE.low_clearance.pK_lower.periodicDose.pulse.T_start,$PRE.low_clearance.pK_lower.periodicDose.absorptionLumen.rising,$PRE.low_clearance.pK_lower.central.rising,low_clearance.pK_lower.periodicDose.pulse.count,low_clearance.pK_lower.periodicDose.pulse.T_start,low_clearance.pK_lower.periodicDose.absorptionLumen.rising,low_clearance.pK_lower.central.rising,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1) * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (300): * Single equations (assignments): 282 * Array equations: 0 * Algorithm blocks: 18 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of prepare postOptimizeDAE: time 0.001119/0.06608, allocations: 1.005 MB / 0.7047 GB, free: 10.97 MB / 0.5418 GB Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0003092/0.06639, allocations: 251 kB / 0.705 GB, free: 10.73 MB / 0.5418 GB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0001772/0.06657, allocations: 161.6 kB / 0.7051 GB, free: 10.57 MB / 0.5418 GB Notification: Performance of postOpt inlineArrayEqn (simulation): time 1.147e-05/0.06658, allocations: 16 kB / 0.7051 GB, free: 10.55 MB / 0.5418 GB Notification: Performance of postOpt constantLinearSystem (simulation): time 3.146e-05/0.06661, allocations: 4 kB / 0.7051 GB, free: 10.55 MB / 0.5418 GB Notification: Performance of postOpt simplifysemiLinear (simulation): time 1.228e-05/0.06662, allocations: 7.969 kB / 0.7052 GB, free: 10.54 MB / 0.5418 GB Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.004383/0.07101, allocations: 4.444 MB / 0.7095 GB, free: 5.906 MB / 0.5418 GB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 6.532e-06/0.07101, allocations: 3.938 kB / 0.7095 GB, free: 5.902 MB / 0.5418 GB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0008986/0.07191, allocations: 323.5 kB / 0.7098 GB, free: 5.586 MB / 0.5418 GB Notification: Performance of postOpt tearingSystem (simulation): time 1.131e-05/0.07192, allocations: 8 kB / 0.7098 GB, free: 5.578 MB / 0.5418 GB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 0.0001277/0.07205, allocations: 71.97 kB / 0.7099 GB, free: 5.508 MB / 0.5418 GB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 8.135e-06/0.07206, allocations: 8 kB / 0.7099 GB, free: 5.5 MB / 0.5418 GB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 3.797e-06/0.07206, allocations: 7.938 kB / 0.7099 GB, free: 5.492 MB / 0.5418 GB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.003339/0.0754, allocations: 3.836 MB / 0.7136 GB, free: 1.418 MB / 0.5418 GB Notification: Performance of postOpt removeConstants (simulation): time 0.0007194/0.07612, allocations: 390.7 kB / 0.714 GB, free: 1.035 MB / 0.5418 GB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0002576/0.07638, allocations: 104 kB / 0.7141 GB, free: 0.9336 MB / 0.5418 GB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0005514/0.07693, allocations: 79.95 kB / 0.7142 GB, free: 0.8555 MB / 0.5418 GB Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0002996/0.07723, allocations: 207.6 kB / 0.7144 GB, free: 0.6523 MB / 0.5418 GB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 8.246e-05/0.07731, allocations: 75.95 kB / 0.7145 GB, free: 0.5781 MB / 0.5418 GB Notification: Performance of sorting global known variables: time 0.0005725/0.07788, allocations: 0.5529 MB / 0.715 GB, free: 16 kB / 0.5418 GB Notification: Performance of sort global known variables: time 8e-08/0.07788, allocations: 0 / 0.715 GB, free: 16 kB / 0.5418 GB Notification: Performance of remove unused functions: time 0.001534/0.07942, allocations: 496 kB / 0.7155 GB, free: 15.52 MB / 0.5574 GB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 6 * Number of states: 42 (low_clearance.pK_lower.central.C,low_clearance.pK_lower.central.AUC,low_clearance.pK_lower.elim.MExc,low_clearance.pK_lower.periodicDose.TotalCumulativeMass,low_clearance.pK_lower.periodicDose.absorptionLumen.C,low_clearance.pK_lower.periodicDose.absorptionLumen.AUC,low_clearance.pK_lower.periodicDose.variableDose.TotalCumulativeMass,low_clearance.pK_1C_Lithium_upper.central.C,low_clearance.pK_1C_Lithium_upper.central.AUC,low_clearance.pK_1C_Lithium_upper.elim.MExc,low_clearance.pK_1C_Lithium_upper.periodicDose.TotalCumulativeMass,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.C,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.AUC,low_clearance.pK_1C_Lithium_upper.periodicDose.variableDose.TotalCumulativeMass,low_clearance.pK_1C_Lithium.central.C,low_clearance.pK_1C_Lithium.central.AUC,low_clearance.pK_1C_Lithium.elim.MExc,low_clearance.pK_1C_Lithium.periodicDose.TotalCumulativeMass,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.C,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.AUC,low_clearance.pK_1C_Lithium.periodicDose.variableDose.TotalCumulativeMass,normal.pK_lower.central.C,normal.pK_lower.central.AUC,normal.pK_lower.elim.MExc,normal.pK_lower.periodicDose.TotalCumulativeMass,normal.pK_lower.periodicDose.absorptionLumen.C,normal.pK_lower.periodicDose.absorptionLumen.AUC,normal.pK_lower.periodicDose.variableDose.TotalCumulativeMass,normal.pK_1C_Lithium_upper.central.C,normal.pK_1C_Lithium_upper.central.AUC,normal.pK_1C_Lithium_upper.elim.MExc,normal.pK_1C_Lithium_upper.periodicDose.TotalCumulativeMass,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.C,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.AUC,normal.pK_1C_Lithium_upper.periodicDose.variableDose.TotalCumulativeMass,normal.pK_1C_Lithium.central.C,normal.pK_1C_Lithium.central.AUC,normal.pK_1C_Lithium.elim.MExc,normal.pK_1C_Lithium.periodicDose.TotalCumulativeMass,normal.pK_1C_Lithium.periodicDose.absorptionLumen.C,normal.pK_1C_Lithium.periodicDose.absorptionLumen.AUC,normal.pK_1C_Lithium.periodicDose.variableDose.TotalCumulativeMass) * Number of discrete variables: 78 ($whenCondition1,$whenCondition2,$whenCondition3,$whenCondition4,$whenCondition5,low_clearance.pK_lower.central.Cmax,low_clearance.pK_lower.central.Cmin,low_clearance.pK_lower.central.rising,low_clearance.pK_lower.periodicDose.absorptionLumen.Cmax,low_clearance.pK_lower.periodicDose.absorptionLumen.Cmin,low_clearance.pK_lower.periodicDose.absorptionLumen.rising,low_clearance.pK_lower.periodicDose.pulse.T_start,low_clearance.pK_lower.periodicDose.pulse.count,$whenCondition6,$whenCondition7,$whenCondition8,$whenCondition9,$whenCondition10,low_clearance.pK_1C_Lithium_upper.central.Cmax,low_clearance.pK_1C_Lithium_upper.central.Cmin,low_clearance.pK_1C_Lithium_upper.central.rising,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,low_clearance.pK_1C_Lithium_upper.periodicDose.pulse.T_start,low_clearance.pK_1C_Lithium_upper.periodicDose.pulse.count,$whenCondition11,$whenCondition12,$whenCondition13,$whenCondition14,$whenCondition15,low_clearance.pK_1C_Lithium.central.Cmax,low_clearance.pK_1C_Lithium.central.Cmin,low_clearance.pK_1C_Lithium.central.rising,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.rising,low_clearance.pK_1C_Lithium.periodicDose.pulse.T_start,low_clearance.pK_1C_Lithium.periodicDose.pulse.count,$whenCondition16,$whenCondition17,$whenCondition18,$whenCondition19,$whenCondition20,normal.pK_lower.central.Cmax,normal.pK_lower.central.Cmin,normal.pK_lower.central.rising,normal.pK_lower.periodicDose.absorptionLumen.Cmax,normal.pK_lower.periodicDose.absorptionLumen.Cmin,normal.pK_lower.periodicDose.absorptionLumen.rising,normal.pK_lower.periodicDose.pulse.T_start,normal.pK_lower.periodicDose.pulse.count,$whenCondition21,$whenCondition22,$whenCondition23,$whenCondition24,$whenCondition25,normal.pK_1C_Lithium_upper.central.Cmax,normal.pK_1C_Lithium_upper.central.Cmin,normal.pK_1C_Lithium_upper.central.rising,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,normal.pK_1C_Lithium_upper.periodicDose.pulse.T_start,normal.pK_1C_Lithium_upper.periodicDose.pulse.count,$whenCondition26,$whenCondition27,$whenCondition28,$whenCondition29,$whenCondition30,normal.pK_1C_Lithium.central.Cmax,normal.pK_1C_Lithium.central.Cmin,normal.pK_1C_Lithium.central.rising,normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,normal.pK_1C_Lithium.periodicDose.absorptionLumen.rising,normal.pK_1C_Lithium.periodicDose.pulse.T_start,normal.pK_1C_Lithium.periodicDose.pulse.count) * Number of discrete states: 66 (normal.pK_1C_Lithium.periodicDose.pulse.count,normal.pK_1C_Lithium.central.Cmin,$whenCondition30,normal.pK_1C_Lithium.central.Cmax,$whenCondition29,normal.pK_1C_Lithium.central.rising,normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,$whenCondition28,normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,$whenCondition27,normal.pK_1C_Lithium.periodicDose.absorptionLumen.rising,normal.pK_1C_Lithium_upper.periodicDose.pulse.count,normal.pK_1C_Lithium_upper.central.Cmin,$whenCondition25,normal.pK_1C_Lithium_upper.central.Cmax,$whenCondition24,normal.pK_1C_Lithium_upper.central.rising,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,$whenCondition23,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,$whenCondition22,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,normal.pK_lower.periodicDose.pulse.count,normal.pK_lower.central.Cmin,$whenCondition20,normal.pK_lower.central.Cmax,$whenCondition19,normal.pK_lower.central.rising,normal.pK_lower.periodicDose.absorptionLumen.Cmin,$whenCondition18,normal.pK_lower.periodicDose.absorptionLumen.Cmax,$whenCondition17,normal.pK_lower.periodicDose.absorptionLumen.rising,low_clearance.pK_1C_Lithium.periodicDose.pulse.count,low_clearance.pK_1C_Lithium.central.Cmin,$whenCondition15,low_clearance.pK_1C_Lithium.central.Cmax,$whenCondition14,low_clearance.pK_1C_Lithium.central.rising,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,$whenCondition13,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,$whenCondition12,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.rising,low_clearance.pK_1C_Lithium_upper.periodicDose.pulse.count,low_clearance.pK_1C_Lithium_upper.central.Cmin,$whenCondition10,low_clearance.pK_1C_Lithium_upper.central.Cmax,$whenCondition9,low_clearance.pK_1C_Lithium_upper.central.rising,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,$whenCondition8,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,$whenCondition7,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,low_clearance.pK_lower.periodicDose.pulse.count,low_clearance.pK_lower.central.Cmin,$whenCondition5,low_clearance.pK_lower.central.Cmax,$whenCondition4,low_clearance.pK_lower.central.rising,low_clearance.pK_lower.periodicDose.absorptionLumen.Cmin,$whenCondition3,low_clearance.pK_lower.periodicDose.absorptionLumen.Cmax,$whenCondition2,low_clearance.pK_lower.periodicDose.absorptionLumen.rising) * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (174): * Single equations (assignments): 150 * Array equations: 0 * Algorithm blocks: 12 * Record equations: 0 * When equations: 12 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of Backend phase and start with SimCode phase: time 0.0003043/0.07972, allocations: 316.2 kB / 0.7158 GB, free: 15.21 MB / 0.5574 GB Notification: Performance of simCode: created initialization part: time 0.002919/0.08264, allocations: 3.019 MB / 0.7187 GB, free: 11.79 MB / 0.5574 GB Notification: Performance of simCode: created event and clocks part: time 4.829e-06/0.08265, allocations: 0 / 0.7187 GB, free: 11.79 MB / 0.5574 GB Notification: Performance of simCode: created simulation system equations: time 0.001214/0.08386, allocations: 1.634 MB / 0.7203 GB, free: 9.934 MB / 0.5574 GB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.00196/0.08582, allocations: 0.5777 MB / 0.7209 GB, free: 9.414 MB / 0.5574 GB Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.006394/0.09221, allocations: 4.493 MB / 0.7253 GB, free: 4.918 MB / 0.5574 GB Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0002697/0.09248, allocations: 292.5 kB / 0.7255 GB, free: 4.609 MB / 0.5574 GB Notification: Performance of simCode: alias equations: time 0.001205/0.09369, allocations: 191.7 kB / 0.7257 GB, free: 4.426 MB / 0.5574 GB Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0002804/0.09397, allocations: 136.5 kB / 0.7259 GB, free: 4.293 MB / 0.5574 GB Notification: Performance of SimCode: time 2.194e-06/0.09397, allocations: 0 / 0.7259 GB, free: 4.293 MB / 0.5574 GB Notification: Performance of Templates: time 0.03507/0.129, allocations: 30.22 MB / 0.7554 GB, free: 7.445 MB / 0.5887 GB " [Timeout remaining time 660] make -j1 -f Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment.makefile [Timeout 660] (rm -f Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment.sim & ./Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment -abortSlowSimulation -alarm=240 -lv LOG_STATS > Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment.pipe 2>&1) [Timeout 240] [Calling sys.exit(0), Time elapsed: 5.333739186171442]