Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.0009806/0.0009806, allocations: 93.06 kB / 19.65 MB, free: 276 kB / 13.93 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001007/0.001007, allocations: 165 kB / 23.02 MB, free: 1.547 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9522/0.9522, allocations: 177.1 MB / 203.4 MB, free: 5.625 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180]
"[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory.
Missing names are:
	Paracetamol_Experiment
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.656/1.656, allocations: 273.5 MB / 0.5209 GB, free: 14.87 MB / 458.7 MB
"
[Timeout remaining time 178]
Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites,tolerance=1e-09,outputFormat="empty",numberOfIntervals=864000,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites")
translateModel(Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites,tolerance=1e-09,outputFormat="empty",numberOfIntervals=864000,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.854e-06/1.854e-06, allocations: 0 / 0.6472 GB, free: 38.37 MB / 0.5262 GB
Notification: Performance of FrontEnd - Absyn->SCode: time 2.178e-05/2.363e-05, allocations: 2.312 kB / 0.6472 GB, free: 38.37 MB / 0.5262 GB
Notification: Performance of NFInst.instantiate(Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites): time 0.003938/0.003962, allocations: 5.738 MB / 0.6528 GB, free: 34.66 MB / 0.5262 GB
Notification: Performance of NFInst.instExpressions: time 0.001361/0.005322, allocations: 1.305 MB / 0.654 GB, free: 33.75 MB / 0.5262 GB
Notification: Performance of NFInst.updateImplicitVariability: time 0.0001854/0.005508, allocations: 7.688 kB / 0.6541 GB, free: 33.75 MB / 0.5262 GB
Notification: Performance of NFTyping.typeComponents: time 0.0001966/0.005704, allocations: 130.3 kB / 0.6542 GB, free: 33.68 MB / 0.5262 GB
Notification: Performance of NFTyping.typeBindings: time 0.0003922/0.006096, allocations: 373.4 kB / 0.6545 GB, free: 33.41 MB / 0.5262 GB
Notification: Performance of NFTyping.typeClassSections: time 0.0003307/0.006427, allocations: 255.3 kB / 0.6548 GB, free: 33.24 MB / 0.5262 GB
Notification: Performance of NFFlatten.flatten: time 0.0006858/0.007113, allocations: 1.276 MB / 0.656 GB, free: 32.53 MB / 0.5262 GB
Notification: Performance of NFFlatten.resolveConnections: time 0.0002681/0.007381, allocations: 210.6 kB / 0.6562 GB, free: 32.4 MB / 0.5262 GB
Notification: Performance of NFEvalConstants.evaluate: time 0.0005561/0.007937, allocations: 0.659 MB / 0.6569 GB, free: 32.11 MB / 0.5262 GB
Notification: Performance of NFSimplifyModel.simplify: time 0.0004462/0.008383, allocations: 392.5 kB / 0.6572 GB, free: 31.98 MB / 0.5262 GB
Notification: Performance of NFPackage.collectConstants: time 9.935e-05/0.008483, allocations: 109.7 kB / 0.6573 GB, free: 31.98 MB / 0.5262 GB
Notification: Performance of NFFlatten.collectFunctions: time 0.0001215/0.008604, allocations: 108.6 kB / 0.6574 GB, free: 31.98 MB / 0.5262 GB
Notification: Performance of NFScalarize.scalarize: time 8.413e-05/0.008688, allocations: 206.7 kB / 0.6576 GB, free: 31.84 MB / 0.5262 GB
Notification: Performance of NFVerifyModel.verify: time 0.0002521/0.008941, allocations: 383.8 kB / 0.658 GB, free: 31.67 MB / 0.5262 GB
Notification: Performance of NFConvertDAE.convert: time 0.0005177/0.009458, allocations: 0.7442 MB / 0.6587 GB, free: 31.28 MB / 0.5262 GB
Notification: Performance of FrontEnd - DAE generated: time 3.838e-06/0.009462, allocations: 7.594 kB / 0.6587 GB, free: 31.28 MB / 0.5262 GB
Notification: Performance of FrontEnd: time 1.172e-06/0.009463, allocations: 0 / 0.6587 GB, free: 31.28 MB / 0.5262 GB
Notification: Performance of Transformations before backend: time 8.235e-06/0.009471, allocations: 0 / 0.6587 GB, free: 31.28 MB / 0.5262 GB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 165
 * Number of variables: 165
Notification: Performance of Generate backend data structure: time 0.001228/0.0107, allocations: 1.468 MB / 0.6602 GB, free: 30.14 MB / 0.5262 GB
Notification: Performance of prepare preOptimizeDAE: time 3.669e-05/0.01074, allocations: 9.812 kB / 0.6602 GB, free: 30.14 MB / 0.5262 GB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0001576/0.01089, allocations: 158.2 kB / 0.6603 GB, free: 30.07 MB / 0.5262 GB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.0003953/0.01129, allocations: 443.5 kB / 0.6608 GB, free: 29.73 MB / 0.5262 GB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 3.235e-05/0.01132, allocations: 54.05 kB / 0.6608 GB, free: 29.71 MB / 0.5262 GB
Notification: Performance of preOpt expandDerOperator (simulation): time 9.159e-05/0.01141, allocations: 78.7 kB / 0.6609 GB, free: 29.68 MB / 0.5262 GB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.0007748/0.01219, allocations: 0.7221 MB / 0.6616 GB, free: 29.27 MB / 0.5262 GB
Notification: Performance of preOpt findStateOrder (simulation): time 2.63e-05/0.01221, allocations: 14.7 kB / 0.6616 GB, free: 29.26 MB / 0.5262 GB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 3.94e-05/0.01225, allocations: 28.41 kB / 0.6616 GB, free: 29.24 MB / 0.5262 GB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 1.539e-05/0.01227, allocations: 15.41 kB / 0.6616 GB, free: 29.24 MB / 0.5262 GB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0005056/0.01277, allocations: 0.4906 MB / 0.6621 GB, free: 29 MB / 0.5262 GB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.001776/0.01455, allocations: 1.963 MB / 0.664 GB, free: 27.7 MB / 0.5262 GB
Notification: Performance of preOpt comSubExp (simulation): time 0.0004775/0.01503, allocations: 0.494 MB / 0.6645 GB, free: 27.41 MB / 0.5262 GB
Notification: Performance of preOpt resolveLoops (simulation): time 0.0002603/0.01529, allocations: 341 kB / 0.6649 GB, free: 27.17 MB / 0.5262 GB
Notification: Performance of preOpt evalFunc (simulation): time 2.646e-05/0.01532, allocations: 16.06 kB / 0.6649 GB, free: 27.17 MB / 0.5262 GB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.0005275/0.01584, allocations: 0.8967 MB / 0.6657 GB, free: 26.47 MB / 0.5262 GB
Notification: Performance of pre-optimization done (n=99): time 2.274e-06/0.01585, allocations: 0 / 0.6657 GB, free: 26.47 MB / 0.5262 GB
Notification: Performance of matching and sorting (n=105): time 0.002432/0.01828, allocations: 2.63 MB / 0.6683 GB, free: 24.8 MB / 0.5262 GB
Notification: Performance of inlineWhenForInitialization (initialization): time 9.781e-05/0.01837, allocations: 0.5427 MB / 0.6688 GB, free: 24.16 MB / 0.5262 GB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0003574/0.01873, allocations: 0.5121 MB / 0.6693 GB, free: 23.89 MB / 0.5262 GB
Notification: Performance of collectPreVariables (initialization): time 4.296e-05/0.01878, allocations: 58.39 kB / 0.6694 GB, free: 23.84 MB / 0.5262 GB
Notification: Performance of collectInitialEqns (initialization): time 0.0001336/0.01891, allocations: 378 kB / 0.6698 GB, free: 23.53 MB / 0.5262 GB
Notification: Performance of collectInitialBindings (initialization): time 0.0001387/0.01905, allocations: 351.2 kB / 0.6701 GB, free: 23.26 MB / 0.5262 GB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.0001678/0.01922, allocations: 185.1 kB / 0.6703 GB, free: 23.16 MB / 0.5262 GB
Notification: Performance of setup shared object (initialization): time 9.829e-05/0.01931, allocations: 0.5679 MB / 0.6708 GB, free: 22.63 MB / 0.5262 GB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.0003246/0.01964, allocations: 467.6 kB / 0.6713 GB, free: 22.28 MB / 0.5262 GB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.0003899/0.02003, allocations: 0.8235 MB / 0.6721 GB, free: 21.44 MB / 0.5262 GB
Notification: Performance of analyzeInitialSystem (initialization): time 0.0009377/0.02097, allocations: 1.533 MB / 0.6736 GB, free: 20.06 MB / 0.5262 GB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 3.867e-06/0.02097, allocations: 1.594 kB / 0.6736 GB, free: 20.06 MB / 0.5262 GB
Notification: Performance of matching and sorting (n=157) (initialization): time 0.001045/0.02201, allocations: 1.364 MB / 0.6749 GB, free: 19.18 MB / 0.5262 GB
Notification: Performance of prepare postOptimizeDAE: time 6.461e-05/0.02208, allocations: 262.2 kB / 0.6752 GB, free: 18.89 MB / 0.5262 GB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 1.035e-05/0.02209, allocations: 7.094 kB / 0.6752 GB, free: 18.89 MB / 0.5262 GB
Notification: Performance of postOpt tearingSystem (initialization): time 2.558e-05/0.02212, allocations: 16.12 kB / 0.6752 GB, free: 18.89 MB / 0.5262 GB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0005244/0.02264, allocations: 247.8 kB / 0.6754 GB, free: 18.87 MB / 0.5262 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 1.5e-05/0.02265, allocations: 16.69 kB / 0.6754 GB, free: 18.86 MB / 0.5262 GB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0002878/0.02294, allocations: 56.05 kB / 0.6755 GB, free: 18.84 MB / 0.5262 GB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 4.891e-05/0.02299, allocations: 52.14 kB / 0.6755 GB, free: 18.83 MB / 0.5262 GB
Warning: Assuming fixed start value for the following 30 variables:
         remdesivir.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         remdesivir.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         remdesivir.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         remdesivir.peripheral.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         GS_704277.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         GS_704277.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         GS_704277.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         GS_704277.peripheral.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         GS_441524.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         GS_441524.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         GS_441524.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         GS_441524.peripheral.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         GS_441524.peripheral.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         GS_441524.peripheral.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         GS_441524.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         GS_441524.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         GS_704277.peripheral.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         GS_704277.peripheral.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         GS_704277.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         GS_704277.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         remdesivir.peripheral.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         remdesivir.peripheral.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         remdesivir.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         remdesivir.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         GS_441524.peripheral.rising:DISCRETE(fixed = true protected = true )  type: Boolean
         GS_441524.central.rising:DISCRETE(fixed = true protected = true )  type: Boolean
         GS_704277.peripheral.rising:DISCRETE(fixed = true protected = true )  type: Boolean
         GS_704277.central.rising:DISCRETE(fixed = true protected = true )  type: Boolean
         remdesivir.peripheral.rising:DISCRETE(fixed = true protected = true )  type: Boolean
         remdesivir.central.rising:DISCRETE(fixed = true protected = true )  type: Boolean
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 32
 * Number of states: 0 ()
 * Number of discrete variables: 63 ($PRE.GS_441524.peripheral.Cmin,GS_441524.peripheral.Cmin,$PRE.GS_441524.peripheral.Cmax,GS_441524.peripheral.Cmax,$PRE.GS_441524.central.Cmin,GS_441524.central.Cmin,$PRE.GS_441524.central.Cmax,GS_441524.central.Cmax,$PRE.GS_704277.peripheral.Cmin,GS_704277.peripheral.Cmin,$PRE.GS_704277.peripheral.Cmax,GS_704277.peripheral.Cmax,$PRE.GS_704277.central.Cmin,GS_704277.central.Cmin,$PRE.GS_704277.central.Cmax,GS_704277.central.Cmax,$PRE.remdesivir.peripheral.Cmin,remdesivir.peripheral.Cmin,$PRE.remdesivir.peripheral.Cmax,remdesivir.peripheral.Cmax,$PRE.remdesivir.central.Cmin,remdesivir.central.Cmin,$PRE.remdesivir.central.Cmax,remdesivir.central.Cmax,$PRE.GS_441524.peripheral.rising,$PRE.GS_441524.periodicDose.pulse.count,$PRE.GS_441524.periodicDose.pulse.T_start,$PRE.GS_441524.central.rising,$PRE.GS_704277.peripheral.rising,$PRE.GS_704277.periodicDose.pulse.count,$PRE.GS_704277.periodicDose.pulse.T_start,$PRE.GS_704277.central.rising,$PRE.remdesivir.peripheral.rising,$PRE.remdesivir.periodicDose.pulse.count,$PRE.remdesivir.periodicDose.pulse.T_start,$PRE.remdesivir.central.rising,GS_441524.peripheral.rising,GS_441524.periodicDose.pulse.count,GS_441524.periodicDose.pulse.T_start,GS_441524.central.rising,GS_704277.peripheral.rising,GS_704277.periodicDose.pulse.count,GS_704277.periodicDose.pulse.T_start,GS_704277.central.rising,remdesivir.peripheral.rising,remdesivir.periodicDose.pulse.count,remdesivir.periodicDose.pulse.T_start,remdesivir.central.rising,$whenCondition12,$whenCondition11,$whenCondition10,$whenCondition9,$whenCondition8,$whenCondition7,$whenCondition6,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1,$whenCondition13,$whenCondition14,$whenCondition15)
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (148):
 * Single equations (assignments): 139
 * Array equations: 0
 * Algorithm blocks: 9
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of prepare postOptimizeDAE: time 0.0003565/0.02335, allocations: 0.5542 MB / 0.6761 GB, free: 18.36 MB / 0.5262 GB
Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0001015/0.02345, allocations: 119.5 kB / 0.6762 GB, free: 18.31 MB / 0.5262 GB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 7.702e-05/0.02353, allocations: 84.61 kB / 0.6763 GB, free: 18.25 MB / 0.5262 GB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 5.57e-06/0.02353, allocations: 8.562 kB / 0.6763 GB, free: 18.25 MB / 0.5262 GB
Notification: Performance of postOpt constantLinearSystem (simulation): time 1.338e-05/0.02355, allocations: 0 / 0.6763 GB, free: 18.25 MB / 0.5262 GB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 9.939e-06/0.02356, allocations: 9.344 kB / 0.6763 GB, free: 18.25 MB / 0.5262 GB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.001641/0.0252, allocations: 1.884 MB / 0.6781 GB, free: 17.13 MB / 0.5262 GB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 2.775e-06/0.0252, allocations: 4 kB / 0.6781 GB, free: 17.12 MB / 0.5262 GB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0004458/0.02564, allocations: 163.2 kB / 0.6783 GB, free: 17.11 MB / 0.5262 GB
Notification: Performance of postOpt tearingSystem (simulation): time 4.749e-06/0.02565, allocations: 6.781 kB / 0.6783 GB, free: 17.11 MB / 0.5262 GB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 4.487e-05/0.02569, allocations: 36.31 kB / 0.6783 GB, free: 17.09 MB / 0.5262 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 3.847e-06/0.0257, allocations: 3.344 kB / 0.6783 GB, free: 17.09 MB / 0.5262 GB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 1.223e-06/0.0257, allocations: 0 / 0.6783 GB, free: 17.09 MB / 0.5262 GB
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.001298/0.027, allocations: 1.712 MB / 0.68 GB, free: 16.04 MB / 0.5262 GB
Notification: Performance of postOpt removeConstants (simulation): time 6.757e-05/0.02707, allocations: 75.52 kB / 0.6801 GB, free: 15.99 MB / 0.5262 GB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 9.39e-05/0.02716, allocations: 42.8 kB / 0.6801 GB, free: 15.96 MB / 0.5262 GB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0002207/0.02738, allocations: 43.64 kB / 0.6802 GB, free: 15.95 MB / 0.5262 GB
Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0001418/0.02752, allocations: 88.86 kB / 0.6802 GB, free: 15.93 MB / 0.5262 GB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 3.88e-05/0.02756, allocations: 36.28 kB / 0.6803 GB, free: 15.92 MB / 0.5262 GB
Notification: Performance of sorting global known variables: time 0.0002359/0.0278, allocations: 341.5 kB / 0.6806 GB, free: 15.75 MB / 0.5262 GB
Notification: Performance of sort global known variables: time 7e-08/0.0278, allocations: 0 / 0.6806 GB, free: 15.75 MB / 0.5262 GB
Notification: Performance of remove unused functions: time 0.0004678/0.02826, allocations: 257.5 kB / 0.6808 GB, free: 15.73 MB / 0.5262 GB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 1
 * Number of states: 21 (remdesivir.central.C,remdesivir.central.AUC,remdesivir.elim.MExc,remdesivir.periodicDose.TotalCumulativeMass,remdesivir.periodicDose.variableDose.TotalCumulativeMass,remdesivir.peripheral.C,remdesivir.peripheral.AUC,GS_704277.central.C,GS_704277.central.AUC,GS_704277.elim.MExc,GS_704277.periodicDose.TotalCumulativeMass,GS_704277.periodicDose.variableDose.TotalCumulativeMass,GS_704277.peripheral.C,GS_704277.peripheral.AUC,GS_441524.central.C,GS_441524.central.AUC,GS_441524.elim.MExc,GS_441524.periodicDose.TotalCumulativeMass,GS_441524.periodicDose.variableDose.TotalCumulativeMass,GS_441524.peripheral.C,GS_441524.peripheral.AUC)
 * Number of discrete variables: 39 ($whenCondition15,$whenCondition14,$whenCondition13,$whenCondition1,$whenCondition2,$whenCondition3,$whenCondition4,$whenCondition5,$whenCondition6,$whenCondition7,$whenCondition8,$whenCondition9,$whenCondition10,$whenCondition11,$whenCondition12,remdesivir.central.Cmax,remdesivir.central.Cmin,remdesivir.central.rising,remdesivir.periodicDose.pulse.T_start,remdesivir.periodicDose.pulse.count,remdesivir.peripheral.Cmax,remdesivir.peripheral.Cmin,remdesivir.peripheral.rising,GS_704277.central.Cmax,GS_704277.central.Cmin,GS_704277.central.rising,GS_704277.periodicDose.pulse.T_start,GS_704277.periodicDose.pulse.count,GS_704277.peripheral.Cmax,GS_704277.peripheral.Cmin,GS_704277.peripheral.rising,GS_441524.central.Cmax,GS_441524.central.Cmin,GS_441524.central.rising,GS_441524.periodicDose.pulse.T_start,GS_441524.periodicDose.pulse.count,GS_441524.peripheral.Cmax,GS_441524.peripheral.Cmin,GS_441524.peripheral.rising)
 * Number of discrete states: 33 (remdesivir.periodicDose.pulse.count,GS_704277.periodicDose.pulse.count,GS_441524.periodicDose.pulse.count,GS_441524.peripheral.Cmin,$whenCondition12,GS_441524.peripheral.Cmax,$whenCondition11,GS_441524.peripheral.rising,GS_441524.central.Cmin,$whenCondition10,GS_441524.central.Cmax,$whenCondition9,GS_441524.central.rising,GS_704277.peripheral.Cmin,$whenCondition8,GS_704277.peripheral.Cmax,$whenCondition7,GS_704277.peripheral.rising,GS_704277.central.Cmin,$whenCondition6,GS_704277.central.Cmax,$whenCondition5,GS_704277.central.rising,remdesivir.peripheral.Cmin,$whenCondition4,remdesivir.peripheral.Cmax,$whenCondition3,remdesivir.peripheral.rising,remdesivir.central.Cmin,$whenCondition2,remdesivir.central.Cmax,$whenCondition1,remdesivir.central.rising)
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (87):
 * Single equations (assignments): 75
 * Array equations: 0
 * Algorithm blocks: 6
 * Record equations: 0
 * When equations: 6
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of Backend phase and start with SimCode phase: time 0.0001608/0.02842, allocations: 190.3 kB / 0.681 GB, free: 15.6 MB / 0.5262 GB
Notification: Performance of simCode: created initialization part: time 0.00091/0.02933, allocations: 1.502 MB / 0.6825 GB, free: 14.42 MB / 0.5262 GB
Notification: Performance of simCode: created event and clocks part: time 1.633e-06/0.02934, allocations: 4.062 kB / 0.6825 GB, free: 14.41 MB / 0.5262 GB
Notification: Performance of simCode: created simulation system equations: time 0.0004391/0.02978, allocations: 0.8165 MB / 0.6833 GB, free: 13.76 MB / 0.5262 GB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0007061/0.03048, allocations: 265 kB / 0.6835 GB, free: 13.69 MB / 0.5262 GB
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.003156/0.03364, allocations: 2.367 MB / 0.6859 GB, free: 12.2 MB / 0.5262 GB
Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0001295/0.03377, allocations: 174.8 kB / 0.686 GB, free: 12.12 MB / 0.5262 GB
Notification: Performance of simCode: alias equations: time 0.000279/0.03405, allocations: 87.64 kB / 0.6861 GB, free: 12.11 MB / 0.5262 GB
Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0001413/0.03419, allocations: 65.67 kB / 0.6862 GB, free: 12.09 MB / 0.5262 GB
Notification: Performance of SimCode: time 6.51e-07/0.03419, allocations: 0 / 0.6862 GB, free: 12.09 MB / 0.5262 GB
Notification: Performance of Templates: time 0.0142/0.04839, allocations: 13.44 MB / 0.6993 GB, free: 2.812 MB / 0.5262 GB
"
[Timeout remaining time 660]
make -j1 -f Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites.makefile [Timeout 660]
(rm -f Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites.sim & ./Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites -abortSlowSimulation -alarm=240  -lv LOG_STATS > Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 6.364832895342261]