Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.0009173/0.0009173, allocations: 88.22 kB / 19.65 MB, free: 272 kB / 13.93 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.0009518/0.0009518, allocations: 173 kB / 23.02 MB, free: 1.539 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9291/0.9291, allocations: 177.1 MB / 203.4 MB, free: 5.621 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180]
"[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory.
Missing names are:
	Paracetamol_Experiment
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.599/1.599, allocations: 273.5 MB / 0.5209 GB, free: 14.84 MB / 458.7 MB
"
[Timeout remaining time 178]
Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK,tolerance=1e-06,outputFormat="empty",numberOfIntervals=50000,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK")
translateModel(Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK,tolerance=1e-06,outputFormat="empty",numberOfIntervals=50000,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.923e-06/1.923e-06, allocations: 0 / 0.647 GB, free: 38.64 MB / 0.5262 GB
Notification: Performance of FrontEnd - Absyn->SCode: time 1.729e-05/1.922e-05, allocations: 2.312 kB / 0.647 GB, free: 38.64 MB / 0.5262 GB
Notification: Performance of NFInst.instantiate(Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK): time 0.001446/0.001465, allocations: 1.285 MB / 0.6482 GB, free: 37.79 MB / 0.5262 GB
Notification: Performance of NFInst.instExpressions: time 0.000185/0.00165, allocations: 61.09 kB / 0.6483 GB, free: 37.75 MB / 0.5262 GB
Notification: Performance of NFInst.updateImplicitVariability: time 3.306e-05/0.001683, allocations: 1.344 kB / 0.6483 GB, free: 37.75 MB / 0.5262 GB
Notification: Performance of NFTyping.typeComponents: time 7.797e-05/0.001761, allocations: 5.25 kB / 0.6483 GB, free: 37.75 MB / 0.5262 GB
Notification: Performance of NFTyping.typeBindings: time 3.895e-05/0.0018, allocations: 5.359 kB / 0.6483 GB, free: 37.74 MB / 0.5262 GB
Notification: Performance of NFTyping.typeClassSections: time 0.0001562/0.001956, allocations: 12.31 kB / 0.6483 GB, free: 37.74 MB / 0.5262 GB
Notification: Performance of NFFlatten.flatten: time 0.0001356/0.002092, allocations: 151.1 kB / 0.6484 GB, free: 37.7 MB / 0.5262 GB
Notification: Performance of NFFlatten.resolveConnections: time 3.654e-05/0.002128, allocations: 5.812 kB / 0.6484 GB, free: 37.7 MB / 0.5262 GB
Notification: Performance of NFEvalConstants.evaluate: time 0.0001008/0.002229, allocations: 76.23 kB / 0.6485 GB, free: 37.68 MB / 0.5262 GB
Notification: Performance of NFSimplifyModel.simplify: time 0.0001291/0.002358, allocations: 71.61 kB / 0.6486 GB, free: 37.67 MB / 0.5262 GB
Notification: Performance of NFPackage.collectConstants: time 2.719e-05/0.002386, allocations: 8.875 kB / 0.6486 GB, free: 37.67 MB / 0.5262 GB
Notification: Performance of NFFlatten.collectFunctions: time 1.818e-05/0.002404, allocations: 11.06 kB / 0.6486 GB, free: 37.67 MB / 0.5262 GB
Notification: Performance of NFScalarize.scalarize: time 3.301e-05/0.002437, allocations: 34.42 kB / 0.6486 GB, free: 37.66 MB / 0.5262 GB
Notification: Performance of NFVerifyModel.verify: time 3.844e-05/0.002475, allocations: 31.06 kB / 0.6487 GB, free: 37.64 MB / 0.5262 GB
Notification: Performance of NFConvertDAE.convert: time 0.0001112/0.002586, allocations: 92.36 kB / 0.6488 GB, free: 37.62 MB / 0.5262 GB
Notification: Performance of FrontEnd - DAE generated: time 1.633e-06/0.002588, allocations: 0 / 0.6488 GB, free: 37.62 MB / 0.5262 GB
Notification: Performance of FrontEnd: time 8.22e-07/0.002589, allocations: 5.625 kB / 0.6488 GB, free: 37.62 MB / 0.5262 GB
Notification: Performance of Transformations before backend: time 4.188e-06/0.002593, allocations: 1.156 kB / 0.6488 GB, free: 37.62 MB / 0.5262 GB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 12
 * Number of variables: 12
Notification: Performance of Generate backend data structure: time 0.0008951/0.003488, allocations: 0.5972 MB / 0.6493 GB, free: 37.23 MB / 0.5262 GB
Notification: Performance of prepare preOptimizeDAE: time 3.512e-05/0.003523, allocations: 10.59 kB / 0.6494 GB, free: 37.23 MB / 0.5262 GB
Notification: Performance of preOpt normalInlineFunction (simulation): time 4.541e-05/0.003569, allocations: 8.875 kB / 0.6494 GB, free: 37.22 MB / 0.5262 GB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.0001091/0.003678, allocations: 135 kB / 0.6495 GB, free: 37.09 MB / 0.5262 GB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 9.057e-06/0.003687, allocations: 2.719 kB / 0.6495 GB, free: 37.09 MB / 0.5262 GB
Notification: Performance of preOpt expandDerOperator (simulation): time 1.884e-05/0.003706, allocations: 7.875 kB / 0.6495 GB, free: 37.08 MB / 0.5262 GB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.0002615/0.003967, allocations: 159.2 kB / 0.6497 GB, free: 37 MB / 0.5262 GB
Notification: Performance of preOpt findStateOrder (simulation): time 9.428e-06/0.003977, allocations: 1.312 kB / 0.6497 GB, free: 37 MB / 0.5262 GB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 1.46e-05/0.003991, allocations: 1.531 kB / 0.6497 GB, free: 37 MB / 0.5262 GB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 8.226e-06/0.003999, allocations: 2.75 kB / 0.6497 GB, free: 37 MB / 0.5262 GB
Notification: Performance of preOpt removeEqualRHS (simulation): time 9.064e-05/0.00409, allocations: 33.86 kB / 0.6497 GB, free: 36.99 MB / 0.5262 GB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.0002293/0.004319, allocations: 276.6 kB / 0.65 GB, free: 36.7 MB / 0.5262 GB
Notification: Performance of preOpt comSubExp (simulation): time 9.103e-05/0.00441, allocations: 43.84 kB / 0.65 GB, free: 36.66 MB / 0.5262 GB
Notification: Performance of preOpt resolveLoops (simulation): time 9.199e-05/0.004502, allocations: 40.61 kB / 0.65 GB, free: 36.64 MB / 0.5262 GB
Notification: Performance of preOpt evalFunc (simulation): time 1.764e-05/0.00452, allocations: 3.5 kB / 0.65 GB, free: 36.64 MB / 0.5262 GB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 1.687e-05/0.004537, allocations: 39.48 kB / 0.6501 GB, free: 36.6 MB / 0.5262 GB
Notification: Performance of pre-optimization done (n=11): time 1.443e-06/0.004538, allocations: 0 / 0.6501 GB, free: 36.6 MB / 0.5262 GB
Notification: Performance of matching and sorting (n=11): time 0.0003168/0.004855, allocations: 103.6 kB / 0.6502 GB, free: 36.55 MB / 0.5262 GB
Notification: Performance of inlineWhenForInitialization (initialization): time 1.982e-05/0.004875, allocations: 53.34 kB / 0.6502 GB, free: 36.49 MB / 0.5262 GB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 6.386e-05/0.004939, allocations: 179.7 kB / 0.6504 GB, free: 36.31 MB / 0.5262 GB
Notification: Performance of collectPreVariables (initialization): time 1.336e-05/0.004952, allocations: 27.95 kB / 0.6504 GB, free: 36.28 MB / 0.5262 GB
Notification: Performance of collectInitialEqns (initialization): time 3.477e-05/0.004987, allocations: 140 kB / 0.6506 GB, free: 36.14 MB / 0.5262 GB
Notification: Performance of collectInitialBindings (initialization): time 2.334e-05/0.00501, allocations: 38.08 kB / 0.6506 GB, free: 36.11 MB / 0.5262 GB
Notification: Performance of simplifyInitialFunctions (initialization): time 5.785e-05/0.005068, allocations: 38.64 kB / 0.6506 GB, free: 36.08 MB / 0.5262 GB
Notification: Performance of setup shared object (initialization): time 4.503e-05/0.005113, allocations: 498.5 kB / 0.6511 GB, free: 35.58 MB / 0.5262 GB
Notification: Performance of preBalanceInitialSystem (initialization): time 6.566e-05/0.005179, allocations: 16.14 kB / 0.6511 GB, free: 35.58 MB / 0.5262 GB
Notification: Performance of partitionIndependentBlocks (initialization): time 7.668e-05/0.005255, allocations: 39.7 kB / 0.6512 GB, free: 35.55 MB / 0.5262 GB
Notification: Performance of analyzeInitialSystem (initialization): time 0.0001308/0.005386, allocations: 62.25 kB / 0.6512 GB, free: 35.52 MB / 0.5262 GB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 2.014e-06/0.005388, allocations: 0 / 0.6512 GB, free: 35.52 MB / 0.5262 GB
Notification: Performance of matching and sorting (n=12) (initialization): time 0.0002054/0.005594, allocations: 92.36 kB / 0.6513 GB, free: 35.47 MB / 0.5262 GB
Notification: Performance of prepare postOptimizeDAE: time 1.173e-05/0.005605, allocations: 5.875 kB / 0.6513 GB, free: 35.47 MB / 0.5262 GB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 5.631e-06/0.005611, allocations: 5.438 kB / 0.6513 GB, free: 35.47 MB / 0.5262 GB
Notification: Performance of postOpt tearingSystem (initialization): time 1.677e-05/0.005628, allocations: 2.156 kB / 0.6513 GB, free: 35.47 MB / 0.5262 GB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.000276/0.005904, allocations: 73.45 kB / 0.6514 GB, free: 35.46 MB / 0.5262 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 6.582e-06/0.00591, allocations: 5.297 kB / 0.6514 GB, free: 35.46 MB / 0.5262 GB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0001883/0.006099, allocations: 58.02 kB / 0.6514 GB, free: 35.46 MB / 0.5262 GB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 1.606e-05/0.006115, allocations: 5.781 kB / 0.6515 GB, free: 35.46 MB / 0.5262 GB
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 2
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (12):
 * Single equations (assignments): 12
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of prepare postOptimizeDAE: time 5.577e-05/0.006171, allocations: 160.7 kB / 0.6516 GB, free: 35.29 MB / 0.5262 GB
Notification: Performance of postOpt lateInlineFunction (simulation): time 2.509e-05/0.006196, allocations: 14.55 kB / 0.6516 GB, free: 35.29 MB / 0.5262 GB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0003061/0.006502, allocations: 175 kB / 0.6518 GB, free: 35.2 MB / 0.5262 GB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 3.307e-06/0.006505, allocations: 6.312 kB / 0.6518 GB, free: 35.2 MB / 0.5262 GB
Notification: Performance of postOpt constantLinearSystem (simulation): time 3.086e-06/0.006508, allocations: 7.25 kB / 0.6518 GB, free: 35.2 MB / 0.5262 GB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 3.497e-06/0.006512, allocations: 5.422 kB / 0.6518 GB, free: 35.2 MB / 0.5262 GB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.0001045/0.006616, allocations: 151.2 kB / 0.6519 GB, free: 35.04 MB / 0.5262 GB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 1.984e-06/0.006618, allocations: 3.188 kB / 0.652 GB, free: 35.04 MB / 0.5262 GB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0002623/0.00688, allocations: 82.44 kB / 0.652 GB, free: 35.04 MB / 0.5262 GB
Notification: Performance of postOpt tearingSystem (simulation): time 2.254e-06/0.006883, allocations: 0 / 0.652 GB, free: 35.04 MB / 0.5262 GB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 1.577e-05/0.006898, allocations: 6.219 kB / 0.652 GB, free: 35.03 MB / 0.5262 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 1.613e-06/0.0069, allocations: 5.422 kB / 0.652 GB, free: 35.03 MB / 0.5262 GB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 1.332e-06/0.006901, allocations: 7.875 kB / 0.652 GB, free: 35.02 MB / 0.5262 GB
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.0002367/0.007138, allocations: 176.2 kB / 0.6522 GB, free: 34.91 MB / 0.5262 GB
Notification: Performance of postOpt removeConstants (simulation): time 1.244e-05/0.00715, allocations: 15.95 kB / 0.6522 GB, free: 34.9 MB / 0.5262 GB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 1.874e-05/0.007169, allocations: 3.719 kB / 0.6522 GB, free: 34.9 MB / 0.5262 GB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0001834/0.007353, allocations: 54.42 kB / 0.6523 GB, free: 34.89 MB / 0.5262 GB
Notification: Performance of postOpt findZeroCrossings (simulation): time 7.141e-05/0.007424, allocations: 28.94 kB / 0.6523 GB, free: 34.88 MB / 0.5262 GB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 1.361e-05/0.007438, allocations: 9.266 kB / 0.6523 GB, free: 34.88 MB / 0.5262 GB
Notification: Performance of sorting global known variables: time 2.518e-05/0.007463, allocations: 135.1 kB / 0.6525 GB, free: 34.76 MB / 0.5262 GB
Notification: Performance of sort global known variables: time 8e-08/0.007463, allocations: 0 / 0.6525 GB, free: 34.76 MB / 0.5262 GB
Notification: Performance of remove unused functions: time 0.000213/0.007676, allocations: 31.16 kB / 0.6525 GB, free: 34.75 MB / 0.5262 GB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 1
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (21):
 * Single equations (assignments): 21
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of Backend phase and start with SimCode phase: time 6.275e-05/0.007739, allocations: 105.6 kB / 0.6526 GB, free: 34.66 MB / 0.5262 GB
Notification: Performance of simCode: created initialization part: time 0.0002056/0.007944, allocations: 70.17 kB / 0.6527 GB, free: 34.64 MB / 0.5262 GB
Notification: Performance of simCode: created event and clocks part: time 1.222e-06/0.007945, allocations: 0 / 0.6527 GB, free: 34.64 MB / 0.5262 GB
Notification: Performance of simCode: created simulation system equations: time 0.0001048/0.00805, allocations: 63.98 kB / 0.6527 GB, free: 34.62 MB / 0.5262 GB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0001863/0.008237, allocations: 21.44 kB / 0.6527 GB, free: 34.61 MB / 0.5262 GB
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.0005706/0.008807, allocations: 244.9 kB / 0.653 GB, free: 34.44 MB / 0.5262 GB
Notification: Performance of simCode: some other stuff during SimCode phase: time 3.02e-05/0.008837, allocations: 66.39 kB / 0.653 GB, free: 34.37 MB / 0.5262 GB
Notification: Performance of simCode: alias equations: time 9.29e-05/0.00893, allocations: 31.98 kB / 0.6531 GB, free: 34.36 MB / 0.5262 GB
Notification: Performance of simCode: all other stuff during SimCode phase: time 0.000107/0.009037, allocations: 21.84 kB / 0.6531 GB, free: 34.35 MB / 0.5262 GB
Notification: Performance of SimCode: time 5.01e-07/0.009038, allocations: 4 kB / 0.6531 GB, free: 34.35 MB / 0.5262 GB
Notification: Performance of Templates: time 0.00472/0.01376, allocations: 2.877 MB / 0.6559 GB, free: 34.12 MB / 0.5262 GB
"
[Timeout remaining time 660]
make -j1 -f Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.makefile [Timeout 660]
(rm -f Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.sim & ./Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK -abortSlowSimulation -alarm=240  -lv LOG_STATS > Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 4.817645082715899]