Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001079/0.001079, allocations: 93.16 kB / 19.65 MB, free: 292 kB / 13.93 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001173/0.001173, allocations: 168.9 kB / 23.01 MB, free: 1.566 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.033/1.033, allocations: 177.1 MB / 203.4 MB, free: 5.637 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180]
"[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory.
Missing names are:
	Paracetamol_Experiment
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.688/1.688, allocations: 273.5 MB / 0.5209 GB, free: 14.74 MB / 458.7 MB
"
[Timeout remaining time 178]
Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1,tolerance=1e-06,outputFormat="empty",numberOfIntervals=500,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1")
translateModel(Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1,tolerance=1e-06,outputFormat="empty",numberOfIntervals=500,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.532e-06/1.532e-06, allocations: 1.312 kB / 0.6469 GB, free: 38.67 MB / 0.5262 GB
Notification: Performance of FrontEnd - Absyn->SCode: time 1.201e-05/1.355e-05, allocations: 2.312 kB / 0.647 GB, free: 38.66 MB / 0.5262 GB
Notification: Performance of NFInst.instantiate(Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1): time 0.0009103/0.0009238, allocations: 0.5211 MB / 0.6475 GB, free: 38.38 MB / 0.5262 GB
Notification: Performance of NFInst.instExpressions: time 0.0001331/0.001057, allocations: 21.72 kB / 0.6475 GB, free: 38.37 MB / 0.5262 GB
Notification: Performance of NFInst.updateImplicitVariability: time 2.533e-05/0.001082, allocations: 0 / 0.6475 GB, free: 38.37 MB / 0.5262 GB
Notification: Performance of NFTyping.typeComponents: time 1.893e-05/0.001101, allocations: 3.938 kB / 0.6475 GB, free: 38.37 MB / 0.5262 GB
Notification: Performance of NFTyping.typeBindings: time 4.124e-05/0.001142, allocations: 3.594 kB / 0.6475 GB, free: 38.37 MB / 0.5262 GB
Notification: Performance of NFTyping.typeClassSections: time 0.000102/0.001244, allocations: 14.27 kB / 0.6475 GB, free: 38.36 MB / 0.5262 GB
Notification: Performance of NFFlatten.flatten: time 5.018e-05/0.001295, allocations: 14.33 kB / 0.6475 GB, free: 38.36 MB / 0.5262 GB
Notification: Performance of NFFlatten.resolveConnections: time 3.955e-05/0.001334, allocations: 2.781 kB / 0.6475 GB, free: 38.36 MB / 0.5262 GB
Notification: Performance of NFEvalConstants.evaluate: time 3.706e-05/0.001371, allocations: 14.62 kB / 0.6475 GB, free: 38.36 MB / 0.5262 GB
Notification: Performance of NFSimplifyModel.simplify: time 6.374e-05/0.001435, allocations: 7.766 kB / 0.6475 GB, free: 38.36 MB / 0.5262 GB
Notification: Performance of NFPackage.collectConstants: time 1.574e-05/0.001451, allocations: 1.344 kB / 0.6475 GB, free: 38.36 MB / 0.5262 GB
Notification: Performance of NFFlatten.collectFunctions: time 7.234e-06/0.001458, allocations: 3.156 kB / 0.6475 GB, free: 38.36 MB / 0.5262 GB
Notification: Performance of NFScalarize.scalarize: time 1.508e-05/0.001473, allocations: 6.781 kB / 0.6476 GB, free: 38.35 MB / 0.5262 GB
Notification: Performance of NFVerifyModel.verify: time 1.999e-05/0.001493, allocations: 4.891 kB / 0.6476 GB, free: 38.35 MB / 0.5262 GB
Notification: Performance of NFConvertDAE.convert: time 5.869e-05/0.001552, allocations: 13.5 kB / 0.6476 GB, free: 38.35 MB / 0.5262 GB
Notification: Performance of FrontEnd - DAE generated: time 1.623e-06/0.001553, allocations: 5.281 kB / 0.6476 GB, free: 38.34 MB / 0.5262 GB
Notification: Performance of FrontEnd: time 4e-07/0.001554, allocations: 0 / 0.6476 GB, free: 38.34 MB / 0.5262 GB
Notification: Performance of Transformations before backend: time 3.978e-06/0.001558, allocations: 0 / 0.6476 GB, free: 38.34 MB / 0.5262 GB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 3
 * Number of variables: 3
Notification: Performance of Generate backend data structure: time 0.0002848/0.001842, allocations: 364.7 kB / 0.6479 GB, free: 37.97 MB / 0.5262 GB
Notification: Performance of prepare preOptimizeDAE: time 3.522e-05/0.001878, allocations: 8.531 kB / 0.6479 GB, free: 37.97 MB / 0.5262 GB
Notification: Performance of preOpt normalInlineFunction (simulation): time 3.211e-05/0.00191, allocations: 4.938 kB / 0.6479 GB, free: 37.97 MB / 0.5262 GB
Notification: Performance of preOpt evaluateParameters (simulation): time 6.125e-05/0.001971, allocations: 120.8 kB / 0.648 GB, free: 37.84 MB / 0.5262 GB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 1.047e-05/0.001981, allocations: 4.375 kB / 0.6481 GB, free: 37.83 MB / 0.5262 GB
Notification: Performance of preOpt expandDerOperator (simulation): time 2.425e-05/0.002006, allocations: 7.266 kB / 0.6481 GB, free: 37.83 MB / 0.5262 GB
Notification: Performance of preOpt clockPartitioning (simulation): time 7.055e-05/0.002076, allocations: 35.62 kB / 0.6481 GB, free: 37.8 MB / 0.5262 GB
Notification: Performance of preOpt findStateOrder (simulation): time 5.951e-06/0.002082, allocations: 1.625 kB / 0.6481 GB, free: 37.8 MB / 0.5262 GB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 8.906e-06/0.002091, allocations: 384 / 0.6481 GB, free: 37.8 MB / 0.5262 GB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 7.564e-06/0.002099, allocations: 384 / 0.6481 GB, free: 37.8 MB / 0.5262 GB
Notification: Performance of preOpt removeEqualRHS (simulation): time 1.711e-05/0.002116, allocations: 15.28 kB / 0.6481 GB, free: 37.79 MB / 0.5262 GB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 9.69e-05/0.002213, allocations: 117.2 kB / 0.6482 GB, free: 37.65 MB / 0.5262 GB
Notification: Performance of preOpt comSubExp (simulation): time 0.0002437/0.002456, allocations: 65.34 kB / 0.6483 GB, free: 37.61 MB / 0.5262 GB
Notification: Performance of preOpt resolveLoops (simulation): time 1.737e-05/0.002474, allocations: 17.44 kB / 0.6483 GB, free: 37.59 MB / 0.5262 GB
Notification: Performance of preOpt evalFunc (simulation): time 7.214e-06/0.002481, allocations: 1.312 kB / 0.6483 GB, free: 37.59 MB / 0.5262 GB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 1.38e-05/0.002495, allocations: 36.42 kB / 0.6483 GB, free: 37.55 MB / 0.5262 GB
Notification: Performance of pre-optimization done (n=3): time 7.61e-07/0.002496, allocations: 0 / 0.6483 GB, free: 37.55 MB / 0.5262 GB
Notification: Performance of matching and sorting (n=3): time 0.0001197/0.002615, allocations: 62.11 kB / 0.6484 GB, free: 37.51 MB / 0.5262 GB
Notification: Performance of inlineWhenForInitialization (initialization): time 1.727e-05/0.002633, allocations: 53.62 kB / 0.6484 GB, free: 37.45 MB / 0.5262 GB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 4.797e-05/0.00268, allocations: 163.6 kB / 0.6486 GB, free: 37.28 MB / 0.5262 GB
Notification: Performance of collectPreVariables (initialization): time 5.24e-06/0.002686, allocations: 26.67 kB / 0.6486 GB, free: 37.25 MB / 0.5262 GB
Notification: Performance of collectInitialEqns (initialization): time 1.68e-05/0.002703, allocations: 130.3 kB / 0.6488 GB, free: 37.12 MB / 0.5262 GB
Notification: Performance of collectInitialBindings (initialization): time 2.06e-05/0.002723, allocations: 15 kB / 0.6488 GB, free: 37.11 MB / 0.5262 GB
Notification: Performance of simplifyInitialFunctions (initialization): time 2.229e-05/0.002745, allocations: 23.09 kB / 0.6488 GB, free: 37.08 MB / 0.5262 GB
Notification: Performance of setup shared object (initialization): time 4.628e-05/0.002792, allocations: 497.9 kB / 0.6493 GB, free: 36.59 MB / 0.5262 GB
Notification: Performance of preBalanceInitialSystem (initialization): time 1.34e-05/0.002805, allocations: 4.812 kB / 0.6493 GB, free: 36.59 MB / 0.5262 GB
Notification: Performance of partitionIndependentBlocks (initialization): time 1.081e-05/0.002816, allocations: 9.328 kB / 0.6493 GB, free: 36.58 MB / 0.5262 GB
Notification: Performance of analyzeInitialSystem (initialization): time 5.218e-05/0.002868, allocations: 35.08 kB / 0.6493 GB, free: 36.56 MB / 0.5262 GB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 1.884e-06/0.00287, allocations: 1.281 kB / 0.6493 GB, free: 36.56 MB / 0.5262 GB
Notification: Performance of matching and sorting (n=6) (initialization): time 5.482e-05/0.002925, allocations: 61.78 kB / 0.6494 GB, free: 36.52 MB / 0.5262 GB
Notification: Performance of prepare postOptimizeDAE: time 1.132e-05/0.002936, allocations: 5.844 kB / 0.6494 GB, free: 36.52 MB / 0.5262 GB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 4.338e-06/0.00294, allocations: 2.875 kB / 0.6494 GB, free: 36.52 MB / 0.5262 GB
Notification: Performance of postOpt tearingSystem (initialization): time 1.41e-05/0.002955, allocations: 2.219 kB / 0.6494 GB, free: 36.52 MB / 0.5262 GB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 3.615e-05/0.002991, allocations: 8.344 kB / 0.6494 GB, free: 36.52 MB / 0.5262 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 5.27e-06/0.002996, allocations: 0 / 0.6494 GB, free: 36.52 MB / 0.5262 GB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 1.322e-05/0.003009, allocations: 11.56 kB / 0.6494 GB, free: 36.51 MB / 0.5262 GB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 5.6e-06/0.003015, allocations: 4 kB / 0.6494 GB, free: 36.51 MB / 0.5262 GB
Warning: Assuming fixed start value for the following 3 variables:
         V:VARIABLE(start = 10.0 fixed = true )  \"count of viral particles\" type: Real
         I:VARIABLE(start = 0.0 fixed = true )  \"count of infectious cells\" type: Real
         T:VARIABLE(start = 1e6 fixed = true )  \"count of target(susceptible) cells\" type: Real
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 1
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (6):
 * Single equations (assignments): 6
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of prepare postOptimizeDAE: time 7.379e-05/0.003089, allocations: 162 kB / 0.6496 GB, free: 36.35 MB / 0.5262 GB
Notification: Performance of postOpt lateInlineFunction (simulation): time 6.092e-06/0.003095, allocations: 6.156 kB / 0.6496 GB, free: 36.34 MB / 0.5262 GB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 2.316e-05/0.003118, allocations: 7.688 kB / 0.6496 GB, free: 36.33 MB / 0.5262 GB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 1.774e-06/0.00312, allocations: 1.469 kB / 0.6496 GB, free: 36.33 MB / 0.5262 GB
Notification: Performance of postOpt constantLinearSystem (simulation): time 3.316e-06/0.003123, allocations: 2.594 kB / 0.6496 GB, free: 36.33 MB / 0.5262 GB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 2.815e-06/0.003126, allocations: 3.938 kB / 0.6496 GB, free: 36.33 MB / 0.5262 GB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 3.995e-05/0.003166, allocations: 118 kB / 0.6497 GB, free: 36.19 MB / 0.5262 GB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 4.81e-07/0.003166, allocations: 1.281 kB / 0.6497 GB, free: 36.19 MB / 0.5262 GB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 3.36e-05/0.0032, allocations: 4.344 kB / 0.6497 GB, free: 36.19 MB / 0.5262 GB
Notification: Performance of postOpt tearingSystem (simulation): time 1.102e-06/0.003201, allocations: 0 / 0.6497 GB, free: 36.19 MB / 0.5262 GB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 1.176e-05/0.003213, allocations: 3.031 kB / 0.6497 GB, free: 36.19 MB / 0.5262 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 7.11e-07/0.003213, allocations: 0 / 0.6497 GB, free: 36.19 MB / 0.5262 GB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 1.482e-06/0.003215, allocations: 5.453 kB / 0.6497 GB, free: 36.19 MB / 0.5262 GB
Notification: Performance of postOpt symbolicJacobian (simulation): time 9.034e-05/0.003305, allocations: 102.2 kB / 0.6498 GB, free: 36.09 MB / 0.5262 GB
Notification: Performance of postOpt removeConstants (simulation): time 5.861e-06/0.003311, allocations: 3.031 kB / 0.6498 GB, free: 36.09 MB / 0.5262 GB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 9.247e-06/0.00332, allocations: 3.422 kB / 0.6498 GB, free: 36.09 MB / 0.5262 GB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 9.698e-06/0.00333, allocations: 1.312 kB / 0.6498 GB, free: 36.09 MB / 0.5262 GB
Notification: Performance of postOpt findZeroCrossings (simulation): time 1.588e-05/0.003346, allocations: 9.719 kB / 0.6498 GB, free: 36.09 MB / 0.5262 GB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 1.552e-06/0.003347, allocations: 1.344 kB / 0.6498 GB, free: 36.09 MB / 0.5262 GB
Notification: Performance of sorting global known variables: time 1.688e-05/0.003364, allocations: 124.9 kB / 0.6499 GB, free: 35.97 MB / 0.5262 GB
Notification: Performance of sort global known variables: time 5e-08/0.003364, allocations: 0 / 0.6499 GB, free: 35.97 MB / 0.5262 GB
Notification: Performance of remove unused functions: time 0.0001168/0.003481, allocations: 16.81 kB / 0.65 GB, free: 35.96 MB / 0.5262 GB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 1
 * Number of states: 3 (V,I,T)
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (3):
 * Single equations (assignments): 3
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of Backend phase and start with SimCode phase: time 4.933e-05/0.00353, allocations: 95.31 kB / 0.65 GB, free: 35.88 MB / 0.5262 GB
Notification: Performance of simCode: created initialization part: time 7.94e-05/0.00361, allocations: 28.31 kB / 0.6501 GB, free: 35.86 MB / 0.5262 GB
Notification: Performance of simCode: created event and clocks part: time 1.773e-06/0.003612, allocations: 2.156 kB / 0.6501 GB, free: 35.86 MB / 0.5262 GB
Notification: Performance of simCode: created simulation system equations: time 1.251e-05/0.003624, allocations: 17.44 kB / 0.6501 GB, free: 35.85 MB / 0.5262 GB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0001021/0.003726, allocations: 8.156 kB / 0.6501 GB, free: 35.85 MB / 0.5262 GB
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.0001855/0.003912, allocations: 142.8 kB / 0.6502 GB, free: 35.71 MB / 0.5262 GB
Notification: Performance of simCode: some other stuff during SimCode phase: time 2.165e-05/0.003933, allocations: 60.41 kB / 0.6503 GB, free: 35.63 MB / 0.5262 GB
Notification: Performance of simCode: alias equations: time 1.256e-05/0.003946, allocations: 5.578 kB / 0.6503 GB, free: 35.63 MB / 0.5262 GB
Notification: Performance of simCode: all other stuff during SimCode phase: time 2.152e-05/0.003967, allocations: 12.16 kB / 0.6503 GB, free: 35.62 MB / 0.5262 GB
Notification: Performance of SimCode: time 4.11e-07/0.003968, allocations: 0 / 0.6503 GB, free: 35.62 MB / 0.5262 GB
Notification: Performance of Templates: time 0.001671/0.005638, allocations: 367.2 kB / 0.6507 GB, free: 35.57 MB / 0.5262 GB
"
[Timeout remaining time 660]
make -j1 -f Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1.makefile [Timeout 660]
(rm -f Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1.sim & ./Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1 -abortSlowSimulation -alarm=240  -lv LOG_STATS > Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 4.835591973271221]