Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.0008938/0.0008938, allocations: 93.06 kB / 19.65 MB, free: 280 kB / 13.93 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.0009153/0.0009153, allocations: 169 kB / 23.02 MB, free: 1.551 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9687/0.9687, allocations: 177.1 MB / 203.4 MB, free: 5.66 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo): time 0.09027/0.09027, allocations: 17.46 MB / 277.4 MB, free: 11.58 MB / 266.7 MB
"
[Timeout remaining time 180]
Using package Chemical with version 2.0.1 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Chemical.Obsolete.Examples.Hemoglobin.Joels57,tolerance=1e-05,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57")
translateModel(Chemical.Obsolete.Examples.Hemoglobin.Joels57,tolerance=1e-05,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 2.234e-06/2.234e-06, allocations: 0 / 353.6 MB, free: 9.855 MB / 282.7 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 3.412e-05/3.636e-05, allocations: 2.312 kB / 353.6 MB, free: 9.852 MB / 282.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Obsolete.mo:14335:7-14335:66:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Obsolete.mo:14335:7-14335:66:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"system\" component but
an inner \"system\" component is not defined.
For simulation drag Modelica.Fluid.System into your model
to specify system properties.
Notification: Performance of NFInst.instantiate(Chemical.Obsolete.Examples.Hemoglobin.Joels57): time 0.2001/0.2002, allocations: 80.23 MB / 433.8 MB, free: 12.41 MB / 330.7 MB
Notification: Performance of NFInst.instExpressions: time 0.06398/0.2642, allocations: 66.78 MB / 0.4888 GB, free: 2.789 MB / 362.7 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.01028/0.2744, allocations: 230.1 kB / 0.4891 GB, free: 2.562 MB / 362.7 MB
Notification: Performance of NFTyping.typeComponents: time 0.007835/0.2823, allocations: 2.729 MB / 0.4917 GB, free: 15.81 MB / 378.7 MB
Notification: Performance of NFTyping.typeBindings: time 0.02659/0.3089, allocations: 9.407 MB / 0.5009 GB, free: 6.332 MB / 378.7 MB
Notification: Performance of NFTyping.typeClassSections: time 0.03228/0.3412, allocations: 14.83 MB / 0.5154 GB, free: 7.445 MB / 394.7 MB
Notification: Performance of NFFlatten.flatten: time 0.4287/0.7699, allocations: 91.33 MB / 0.6046 GB, free: 12.52 MB / 442.8 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.06891/0.8388, allocations: 54.61 MB / 0.6579 GB, free: 9.781 MB / 458.8 MB
Notification: Performance of NFEvalConstants.evaluate: time 0.1366/0.9753, allocations: 75.04 MB / 0.7312 GB, free: 2.957 MB / 0.4949 GB
Notification: Performance of NFSimplifyModel.simplify: time 0.4686/1.444, allocations: 51.3 MB / 0.7813 GB, free: 50.62 MB / 0.5107 GB
Notification: Performance of NFPackage.collectConstants: time 0.04341/1.487, allocations: 12.2 MB / 0.7932 GB, free: 50.62 MB / 0.5107 GB
Notification: Performance of NFFlatten.collectFunctions: time 0.06109/1.548, allocations: 17.34 MB / 0.8101 GB, free: 50.62 MB / 0.5107 GB
Notification: Performance of NFScalarize.scalarize: time 0.04528/1.594, allocations: 24.28 MB / 0.8339 GB, free: 46.52 MB / 0.5107 GB
Notification: Performance of NFVerifyModel.verify: time 0.07013/1.664, allocations: 31.12 MB / 0.8642 GB, free: 33.84 MB / 0.5107 GB
Notification: Performance of NFConvertDAE.convert: time 0.1296/1.793, allocations: 87 MB / 0.9492 GB, free: 5.746 MB / 0.5575 GB
Notification: Performance of FrontEnd - DAE generated: time 6.753e-06/1.793, allocations: 0 / 0.9492 GB, free: 5.746 MB / 0.5575 GB
Notification: Performance of FrontEnd: time 1.954e-06/1.793, allocations: 0 / 0.9492 GB, free: 5.746 MB / 0.5575 GB
Notification: Performance of Transformations before backend: time 0.003398/1.797, allocations: 0 / 0.9492 GB, free: 5.746 MB / 0.5575 GB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 11424
 * Number of variables: 11424
Notification: Performance of Generate backend data structure: time 0.377/2.174, allocations: 70.31 MB / 1.018 GB, free: 119.1 MB / 0.5575 GB
Notification: Performance of prepare preOptimizeDAE: time 4.951e-05/2.174, allocations: 13.66 kB / 1.018 GB, free: 119.1 MB / 0.5575 GB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.07257/2.247, allocations: 19.72 MB / 1.037 GB, free: 109.7 MB / 0.5575 GB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.07464/2.321, allocations: 37.74 MB / 1.074 GB, free: 74.66 MB / 0.5575 GB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.006266/2.327, allocations: 9.202 MB / 1.083 GB, free: 64.12 MB / 0.5575 GB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.02694/2.354, allocations: 4.565 MB / 1.087 GB, free: 59.56 MB / 0.5575 GB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.1544/2.509, allocations: 58.04 MB / 1.144 GB, free: 0.7344 MB / 0.5575 GB
Notification: Performance of preOpt findStateOrder (simulation): time 0.001745/2.511, allocations: 26.91 kB / 1.144 GB, free: 0.7227 MB / 0.5575 GB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.01828/2.529, allocations: 1.763 MB / 1.146 GB, free: 14.96 MB / 0.5732 GB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 0.0006459/2.529, allocations: 1.059 MB / 1.147 GB, free: 13.9 MB / 0.5732 GB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.5561/3.086, allocations: 61.5 MB / 1.207 GB, free: 111.8 MB / 0.5734 GB
Warning: The model contains alias variables with redundant start and/or conflicting nominal values. It is recommended to resolve the conflicts, because otherwise the system could be hard to solve. To print the conflicting alias sets and the chosen candidates please use -d=aliasConflicts.
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.8438/3.929, allocations: 280.8 MB / 1.481 GB, free: 87.46 MB / 0.6203 GB
Notification: Performance of preOpt comSubExp (simulation): time 2.364/6.294, allocations: 0.9691 GB / 2.45 GB, free: 113.8 MB / 0.6359 GB
Notification: Performance of preOpt resolveLoops (simulation): time 0.0492/6.343, allocations: 23.29 MB / 2.473 GB, free: 97.05 MB / 0.6359 GB
Notification: Performance of preOpt evalFunc (simulation): time 0.5441/6.887, allocations: 156.8 MB / 2.626 GB, free: 121.5 MB / 0.6359 GB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.0002604/6.887, allocations: 337.4 kB / 2.626 GB, free: 121.5 MB / 0.6359 GB
Notification: Performance of preOpt simplifyInStream (simulation): time 0.06412/6.951, allocations: 27.66 MB / 2.653 GB, free: 116.6 MB / 0.6359 GB
Notification: Performance of pre-optimization done (n=2949): time 0.000152/6.952, allocations: 0 / 2.653 GB, free: 116.6 MB / 0.6359 GB
Notification: Performance of matching and sorting (n=3351): time 1.289/8.241, allocations: 230.6 MB / 2.879 GB, free: 109.9 MB / 0.6359 GB
Notification: Performance of inlineWhenForInitialization (initialization): time 0.0002191/8.241, allocations: 446.7 kB / 2.879 GB, free: 109.8 MB / 0.6359 GB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.04388/8.285, allocations: 25.98 MB / 2.904 GB, free: 104.7 MB / 0.6359 GB
Notification: Performance of collectPreVariables (initialization): time 0.01213/8.297, allocations: 0.5639 MB / 2.905 GB, free: 104.7 MB / 0.6359 GB
Notification: Performance of collectInitialEqns (initialization): time 0.01695/8.314, allocations: 23.24 MB / 2.928 GB, free: 97.2 MB / 0.6359 GB
Notification: Performance of collectInitialBindings (initialization): time 0.0218/8.336, allocations: 12.84 MB / 2.94 GB, free: 87.84 MB / 0.6359 GB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.04758/8.383, allocations: 10.31 MB / 2.95 GB, free: 79.21 MB / 0.6359 GB
Notification: Performance of setup shared object (initialization): time 5.712e-05/8.383, allocations: 480.8 kB / 2.951 GB, free: 78.73 MB / 0.6359 GB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.0451/8.428, allocations: 11.66 MB / 2.962 GB, free: 67.07 MB / 0.6359 GB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.0479/8.476, allocations: 32.16 MB / 2.994 GB, free: 26.81 MB / 0.6359 GB
Notification: Performance of analyzeInitialSystem (initialization): time 0.4017/8.878, allocations: 48.26 MB / 3.041 GB, free: 89.48 MB / 0.6359 GB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 0.0007114/8.879, allocations: 127.4 kB / 3.041 GB, free: 89.48 MB / 0.6359 GB
Notification: Performance of matching and sorting (n=5583) (initialization): time 0.6684/9.547, allocations: 135.2 MB / 3.173 GB, free: 32.73 MB / 0.6359 GB
Notification: Performance of prepare postOptimizeDAE: time 0.0003355/9.547, allocations: 196 kB / 3.173 GB, free: 32.54 MB / 0.6359 GB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 0.0005952/9.548, allocations: 432 kB / 3.173 GB, free: 32.12 MB / 0.6359 GB
Notification: Performance of postOpt tearingSystem (initialization): time 0.585/10.13, allocations: 158.8 MB / 3.328 GB, free: 126.3 MB / 0.6828 GB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.03211/10.17, allocations: 11.06 MB / 3.339 GB, free: 125.9 MB / 0.6828 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 0.2493/10.41, allocations: 88 MB / 3.425 GB, free: 66.47 MB / 0.6828 GB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.04292/10.46, allocations: 2.478 MB / 3.428 GB, free: 63.99 MB / 0.6828 GB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.01535/10.47, allocations: 2.74 MB / 3.43 GB, free: 61.25 MB / 0.6828 GB
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 1983
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (5439):
 * Single equations (assignments): 5430
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 9
 * Mixed (continuous/discrete) equation systems: 0
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 6 systems
   {(1,3,100.0%), (33,10,82.4%), (1,3,100.0%), (33,10,82.4%), (1,3,100.0%), (33,10,82.4%)}
 * Non-linear torn systems (#iteration vars, #inner vars): 3 systems
   {(1,3), (1,3), (1,3)}
Notification: Performance of prepare postOptimizeDAE: time 0.03322/10.51, allocations: 2.894 MB / 3.433 GB, free: 59.29 MB / 0.6828 GB
Notification: Performance of postOpt lateInlineFunction (simulation): time 0.02673/10.53, allocations: 4.162 MB / 3.437 GB, free: 56.87 MB / 0.6828 GB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.7684/11.3, allocations: 91.02 MB / 3.526 GB, free: 115.6 MB / 0.6828 GB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 0.0003649/11.3, allocations: 356.8 kB / 3.526 GB, free: 115.6 MB / 0.6828 GB
Notification: Performance of postOpt constantLinearSystem (simulation): time 0.0004468/11.3, allocations: 55.25 kB / 3.526 GB, free: 115.6 MB / 0.6828 GB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 0.0009527/11.3, allocations: 183.8 kB / 3.527 GB, free: 115.6 MB / 0.6828 GB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.495/11.8, allocations: 147.1 MB / 3.67 GB, free: 60.1 MB / 0.6828 GB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 0.0002767/11.8, allocations: 8 kB / 3.67 GB, free: 60.09 MB / 0.6828 GB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.02525/11.82, allocations: 7.213 MB / 3.677 GB, free: 53.21 MB / 0.6828 GB
Notification: Performance of postOpt tearingSystem (simulation): time 0.4318/12.25, allocations: 53.07 MB / 3.729 GB, free: 105.2 MB / 0.6828 GB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 0.01069/12.27, allocations: 1.399 MB / 3.731 GB, free: 105.2 MB / 0.6828 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 0.1483/12.41, allocations: 49.29 MB / 3.779 GB, free: 88.3 MB / 0.6828 GB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 9.969e-06/12.41, allocations: 15.94 kB / 3.779 GB, free: 88.3 MB / 0.6828 GB
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.4438/12.86, allocations: 104.4 MB / 3.881 GB, free: 81.29 MB / 0.6828 GB
Notification: Performance of postOpt removeConstants (simulation): time 0.0259/12.88, allocations: 9.739 MB / 3.89 GB, free: 77.11 MB / 0.6828 GB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0113/12.89, allocations: 0.8937 MB / 3.891 GB, free: 76.8 MB / 0.6828 GB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.02366/12.92, allocations: 1.568 MB / 3.893 GB, free: 75.71 MB / 0.6828 GB
Notification: Performance of postOpt findZeroCrossings (simulation): time 0.01807/12.94, allocations: 5.116 MB / 3.898 GB, free: 70.74 MB / 0.6828 GB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 0.007442/12.94, allocations: 1.347 MB / 3.899 GB, free: 69.39 MB / 0.6828 GB
Notification: Performance of sorting global known variables: time 0.03068/12.97, allocations: 14.77 MB / 3.913 GB, free: 54.75 MB / 0.6828 GB
Notification: Performance of sort global known variables: time 2.7e-07/12.97, allocations: 0 / 3.913 GB, free: 54.75 MB / 0.6828 GB
Notification: Performance of remove unused functions: time 0.06975/13.04, allocations: 15.4 MB / 3.928 GB, free: 39.71 MB / 0.6828 GB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 45
 * Number of states: 180 (pCO2_2000.solution.temperature,pCO2_2000.O2_free.logn,pCO2_2000.H2O.logn,pCO2_2000.relaxed.OxyHm[1].logn,pCO2_2000.relaxed.OxyHm[2].logn,pCO2_2000.relaxed.OxyHm[3].logn,pCO2_2000.relaxed.OxyHm[4].logn,pCO2_2000.relaxed.DeoxyHm[1].logn,pCO2_2000.relaxed.DeoxyHm[2].logn,pCO2_2000.relaxed.DeoxyHm[3].logn,pCO2_2000.relaxed.DeoxyHm[4].logn,pCO2_2000.relaxed.HmAH[1].logn,pCO2_2000.relaxed.HmAH[2].logn,pCO2_2000.relaxed.HmAH[3].logn,pCO2_2000.relaxed.HmAH[4].logn,pCO2_2000.relaxed.HmA[1].logn,pCO2_2000.relaxed.HmA[2].logn,pCO2_2000.relaxed.HmA[3].logn,pCO2_2000.relaxed.HmA[4].logn,pCO2_2000.relaxed.HmNH3[1].logn,pCO2_2000.relaxed.HmNH3[2].logn,pCO2_2000.relaxed.HmNH3[3].logn,pCO2_2000.relaxed.HmNH3[4].logn,pCO2_2000.relaxed.HmNH2[1].logn,pCO2_2000.relaxed.HmNH2[2].logn,pCO2_2000.relaxed.HmNH2[3].logn,pCO2_2000.relaxed.HmNH2[4].logn,pCO2_2000.relaxed.HmNHCOO[1].logn,pCO2_2000.relaxed.HmNHCOO[2].logn,pCO2_2000.relaxed.HmNHCOO[3].logn,pCO2_2000.relaxed.HmNHCOO[4].logn,pCO2_2000.tensed.OxyHm[1].logn,pCO2_2000.tensed.OxyHm[2].logn,pCO2_2000.tensed.OxyHm[3].logn,pCO2_2000.tensed.OxyHm[4].logn,pCO2_2000.tensed.DeoxyHm[1].logn,pCO2_2000.tensed.DeoxyHm[2].logn,pCO2_2000.tensed.DeoxyHm[3].logn,pCO2_2000.tensed.DeoxyHm[4].logn,pCO2_2000.tensed.HmAH[1].logn,pCO2_2000.tensed.HmAH[2].logn,pCO2_2000.tensed.HmAH[3].logn,pCO2_2000.tensed.HmAH[4].logn,pCO2_2000.tensed.HmA[1].logn,pCO2_2000.tensed.HmA[2].logn,pCO2_2000.tensed.HmA[3].logn,pCO2_2000.tensed.HmA[4].logn,pCO2_2000.tensed.HmNH3[1].logn,pCO2_2000.tensed.HmNH3[2].logn,pCO2_2000.tensed.HmNH3[3].logn,pCO2_2000.tensed.HmNH3[4].logn,pCO2_2000.tensed.HmNH2[1].logn,pCO2_2000.tensed.HmNH2[2].logn,pCO2_2000.tensed.HmNH2[3].logn,pCO2_2000.tensed.HmNH2[4].logn,pCO2_2000.tensed.HmNHCOO[1].logn,pCO2_2000.tensed.HmNHCOO[2].logn,pCO2_2000.tensed.HmNHCOO[3].logn,pCO2_2000.tensed.HmNHCOO[4].logn,pCO2_2000.CO2_free.logn,pCO2_5330.solution.temperature,pCO2_5330.O2_free.logn,pCO2_5330.H2O.logn,pCO2_5330.relaxed.OxyHm[1].logn,pCO2_5330.relaxed.OxyHm[2].logn,pCO2_5330.relaxed.OxyHm[3].logn,pCO2_5330.relaxed.OxyHm[4].logn,pCO2_5330.relaxed.DeoxyHm[1].logn,pCO2_5330.relaxed.DeoxyHm[2].logn,pCO2_5330.relaxed.DeoxyHm[3].logn,pCO2_5330.relaxed.DeoxyHm[4].logn,pCO2_5330.relaxed.HmAH[1].logn,pCO2_5330.relaxed.HmAH[2].logn,pCO2_5330.relaxed.HmAH[3].logn,pCO2_5330.relaxed.HmAH[4].logn,pCO2_5330.relaxed.HmA[1].logn,pCO2_5330.relaxed.HmA[2].logn,pCO2_5330.relaxed.HmA[3].logn,pCO2_5330.relaxed.HmA[4].logn,pCO2_5330.relaxed.HmNH3[1].logn,pCO2_5330.relaxed.HmNH3[2].logn,pCO2_5330.relaxed.HmNH3[3].logn,pCO2_5330.relaxed.HmNH3[4].logn,pCO2_5330.relaxed.HmNH2[1].logn,pCO2_5330.relaxed.HmNH2[2].logn,pCO2_5330.relaxed.HmNH2[3].logn,pCO2_5330.relaxed.HmNH2[4].logn,pCO2_5330.relaxed.HmNHCOO[1].logn,pCO2_5330.relaxed.HmNHCOO[2].logn,pCO2_5330.relaxed.HmNHCOO[3].logn,pCO2_5330.relaxed.HmNHCOO[4].logn,pCO2_5330.tensed.OxyHm[1].logn,pCO2_5330.tensed.OxyHm[2].logn,pCO2_5330.tensed.OxyHm[3].logn,pCO2_5330.tensed.OxyHm[4].logn,pCO2_5330.tensed.DeoxyHm[1].logn,pCO2_5330.tensed.DeoxyHm[2].logn,pCO2_5330.tensed.DeoxyHm[3].logn,pCO2_5330.tensed.DeoxyHm[4].logn,pCO2_5330.tensed.HmAH[1].logn,pCO2_5330.tensed.HmAH[2].logn,pCO2_5330.tensed.HmAH[3].logn,pCO2_5330.tensed.HmAH[4].logn,pCO2_5330.tensed.HmA[1].logn,pCO2_5330.tensed.HmA[2].logn,pCO2_5330.tensed.HmA[3].logn,pCO2_5330.tensed.HmA[4].logn,pCO2_5330.tensed.HmNH3[1].logn,pCO2_5330.tensed.HmNH3[2].logn,pCO2_5330.tensed.HmNH3[3].logn,pCO2_5330.tensed.HmNH3[4].logn,pCO2_5330.tensed.HmNH2[1].logn,pCO2_5330.tensed.HmNH2[2].logn,pCO2_5330.tensed.HmNH2[3].logn,pCO2_5330.tensed.HmNH2[4].logn,pCO2_5330.tensed.HmNHCOO[1].logn,pCO2_5330.tensed.HmNHCOO[2].logn,pCO2_5330.tensed.HmNHCOO[3].logn,pCO2_5330.tensed.HmNHCOO[4].logn,pCO2_5330.CO2_free.logn,pCO2_9330.solution.temperature,pCO2_9330.O2_free.logn,pCO2_9330.H2O.logn,pCO2_9330.relaxed.OxyHm[1].logn,pCO2_9330.relaxed.OxyHm[2].logn,pCO2_9330.relaxed.OxyHm[3].logn,pCO2_9330.relaxed.OxyHm[4].logn,pCO2_9330.relaxed.DeoxyHm[1].logn,pCO2_9330.relaxed.DeoxyHm[2].logn,pCO2_9330.relaxed.DeoxyHm[3].logn,pCO2_9330.relaxed.DeoxyHm[4].logn,pCO2_9330.relaxed.HmAH[1].logn,pCO2_9330.relaxed.HmAH[2].logn,pCO2_9330.relaxed.HmAH[3].logn,pCO2_9330.relaxed.HmAH[4].logn,pCO2_9330.relaxed.HmA[1].logn,pCO2_9330.relaxed.HmA[2].logn,pCO2_9330.relaxed.HmA[3].logn,pCO2_9330.relaxed.HmA[4].logn,pCO2_9330.relaxed.HmNH3[1].logn,pCO2_9330.relaxed.HmNH3[2].logn,pCO2_9330.relaxed.HmNH3[3].logn,pCO2_9330.relaxed.HmNH3[4].logn,pCO2_9330.relaxed.HmNH2[1].logn,pCO2_9330.relaxed.HmNH2[2].logn,pCO2_9330.relaxed.HmNH2[3].logn,pCO2_9330.relaxed.HmNH2[4].logn,pCO2_9330.relaxed.HmNHCOO[1].logn,pCO2_9330.relaxed.HmNHCOO[2].logn,pCO2_9330.relaxed.HmNHCOO[3].logn,pCO2_9330.relaxed.HmNHCOO[4].logn,pCO2_9330.tensed.OxyHm[1].logn,pCO2_9330.tensed.OxyHm[2].logn,pCO2_9330.tensed.OxyHm[3].logn,pCO2_9330.tensed.OxyHm[4].logn,pCO2_9330.tensed.DeoxyHm[1].logn,pCO2_9330.tensed.DeoxyHm[2].logn,pCO2_9330.tensed.DeoxyHm[3].logn,pCO2_9330.tensed.DeoxyHm[4].logn,pCO2_9330.tensed.HmAH[1].logn,pCO2_9330.tensed.HmAH[2].logn,pCO2_9330.tensed.HmAH[3].logn,pCO2_9330.tensed.HmAH[4].logn,pCO2_9330.tensed.HmA[1].logn,pCO2_9330.tensed.HmA[2].logn,pCO2_9330.tensed.HmA[3].logn,pCO2_9330.tensed.HmA[4].logn,pCO2_9330.tensed.HmNH3[1].logn,pCO2_9330.tensed.HmNH3[2].logn,pCO2_9330.tensed.HmNH3[3].logn,pCO2_9330.tensed.HmNH3[4].logn,pCO2_9330.tensed.HmNH2[1].logn,pCO2_9330.tensed.HmNH2[2].logn,pCO2_9330.tensed.HmNH2[3].logn,pCO2_9330.tensed.HmNH2[4].logn,pCO2_9330.tensed.HmNHCOO[1].logn,pCO2_9330.tensed.HmNHCOO[2].logn,pCO2_9330.tensed.HmNHCOO[3].logn,pCO2_9330.tensed.HmNHCOO[4].logn,pCO2_9330.CO2_free.logn)
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (3666):
 * Single equations (assignments): 3657
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 9
 * Mixed (continuous/discrete) equation systems: 0
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 6 systems
   {(1,3,100.0%), (33,10,82.4%), (1,3,100.0%), (33,10,82.4%), (1,3,100.0%), (33,10,82.4%)}
 * Non-linear torn systems (#iteration vars, #inner vars): 3 systems
   {(1,3), (1,3), (1,3)}
Notification: Performance of Backend phase and start with SimCode phase: time 0.013/13.06, allocations: 3.41 MB / 3.932 GB, free: 37.31 MB / 0.6828 GB
Notification: Performance of simCode: created initialization part: time 0.3807/13.44, allocations: 42.06 MB / 3.973 GB, free: 134.9 MB / 0.6828 GB
Notification: Performance of simCode: created event and clocks part: time 1.334e-05/13.44, allocations: 1.406 kB / 3.973 GB, free: 134.9 MB / 0.6828 GB
Notification: Performance of simCode: created simulation system equations: time 0.06498/13.5, allocations: 22.87 MB / 3.995 GB, free: 132.7 MB / 0.6828 GB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.05045/13.55, allocations: 8.182 MB / 4.003 GB, free: 132 MB / 0.6828 GB
Error: Error parsing unit kDa: Unit not found
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.1885/13.74, allocations: 92.5 MB / 4.093 GB, free: 104 MB / 0.6828 GB
Notification: Performance of simCode: some other stuff during SimCode phase: time 0.02345/13.77, allocations: 13.91 MB / 4.107 GB, free: 102.7 MB / 0.6828 GB
Notification: Performance of simCode: alias equations: time 0.03837/13.8, allocations: 12.03 MB / 4.119 GB, free: 97.7 MB / 0.6828 GB
Notification: Performance of simCode: all other stuff during SimCode phase: time 0.01275/13.82, allocations: 3.595 MB / 4.122 GB, free: 94.91 MB / 0.6828 GB
Notification: Performance of SimCode: time 1.974e-06/13.82, allocations: 0 / 4.122 GB, free: 94.91 MB / 0.6828 GB
Notification: Performance of Templates: time 2.086/15.9, allocations: 0.9126 GB / 5.035 GB, free: 138.3 MB / 0.714 GB
"
[Timeout remaining time 644]
make -j1 -f Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57.makefile [Timeout 660]
(rm -f Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57.pipe ; mkfifo Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57.pipe ; head -c 1048576 < Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57.pipe >> ../files/Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57.sim & ./Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57 -abortSlowSimulation -alarm=240  -lv LOG_STATS > Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 39.33132689399645]