Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_master_Chemical.Obsolete.Examples.ExothermicReaction.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001194/0.001194, allocations: 93.06 kB / 19.65 MB, free: 276 kB / 13.93 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.0009642/0.0009642, allocations: 165 kB / 23.02 MB, free: 1.551 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.057/1.057, allocations: 177.1 MB / 203.4 MB, free: 5.168 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo): time 0.09716/0.09716, allocations: 17.46 MB / 277.4 MB, free: 11.43 MB / 266.7 MB
"
[Timeout remaining time 180]
Using package Chemical with version 2.0.1 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Chemical.Obsolete.Examples.ExothermicReaction,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Obsolete.Examples.ExothermicReaction")
translateModel(Chemical.Obsolete.Examples.ExothermicReaction,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Obsolete.Examples.ExothermicReaction") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.864e-06/1.864e-06, allocations: 0 / 353.5 MB, free: 9.844 MB / 282.7 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 1.9e-05/2.086e-05, allocations: 5.406 kB / 353.5 MB, free: 9.84 MB / 282.7 MB
Notification: Performance of NFInst.instantiate(Chemical.Obsolete.Examples.ExothermicReaction): time 0.01461/0.01463, allocations: 8.562 MB / 362.1 MB, free: 1.238 MB / 282.7 MB
Notification: Performance of NFInst.instExpressions: time 0.04359/0.05821, allocations: 23.52 MB / 385.6 MB, free: 9.625 MB / 314.7 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.001649/0.05986, allocations: 31.75 kB / 385.7 MB, free: 9.594 MB / 314.7 MB
Notification: Performance of NFTyping.typeComponents: time 0.001462/0.06133, allocations: 480 kB / 386.1 MB, free: 9.121 MB / 314.7 MB
Notification: Performance of NFTyping.typeBindings: time 0.006288/0.06761, allocations: 2.117 MB / 388.2 MB, free: 6.988 MB / 314.7 MB
Notification: Performance of NFTyping.typeClassSections: time 0.009466/0.07708, allocations: 3.145 MB / 391.4 MB, free: 3.824 MB / 314.7 MB
Notification: Performance of NFFlatten.flatten: time 0.003893/0.08097, allocations: 2.584 MB / 394 MB, free: 1.227 MB / 314.7 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.001279/0.08225, allocations: 1.198 MB / 395.2 MB, free: 15.98 MB / 330.7 MB
Notification: Performance of NFEvalConstants.evaluate: time 0.001418/0.08367, allocations: 1.724 MB / 396.9 MB, free: 14.26 MB / 330.7 MB
Notification: Performance of NFSimplifyModel.simplify: time 0.001143/0.08481, allocations: 1.142 MB / 398 MB, free: 13.11 MB / 330.7 MB
Notification: Performance of NFPackage.collectConstants: time 0.0002324/0.08504, allocations: 216 kB / 398.2 MB, free: 12.9 MB / 330.7 MB
Notification: Performance of NFFlatten.collectFunctions: time 0.005072/0.09012, allocations: 2.487 MB / 400.7 MB, free: 10.41 MB / 330.7 MB
Notification: Performance of NFScalarize.scalarize: time 0.0003269/0.09044, allocations: 0.5217 MB / 401.3 MB, free: 9.887 MB / 330.7 MB
Notification: Performance of NFVerifyModel.verify: time 0.0006175/0.09106, allocations: 0.7951 MB / 402 MB, free: 9.09 MB / 330.7 MB
Notification: Performance of NFConvertDAE.convert: time 0.005382/0.09644, allocations: 4.704 MB / 406.8 MB, free: 4.367 MB / 330.7 MB
Notification: Performance of FrontEnd - DAE generated: time 3.216e-06/0.09645, allocations: 0 / 406.8 MB, free: 4.367 MB / 330.7 MB
Notification: Performance of FrontEnd: time 1.834e-06/0.09645, allocations: 4 kB / 406.8 MB, free: 4.363 MB / 330.7 MB
Notification: Performance of Transformations before backend: time 1.963e-05/0.09647, allocations: 0 / 406.8 MB, free: 4.363 MB / 330.7 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 455
 * Number of variables: 455
Notification: Performance of Generate backend data structure: time 0.002859/0.09933, allocations: 2.76 MB / 409.5 MB, free: 1.551 MB / 330.7 MB
Notification: Performance of prepare preOptimizeDAE: time 3.494e-05/0.09936, allocations: 8.031 kB / 409.5 MB, free: 1.543 MB / 330.7 MB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.001151/0.1005, allocations: 0.6847 MB / 410.2 MB, free: 0.8555 MB / 330.7 MB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.1323/0.2328, allocations: 0.9189 MB / 411.1 MB, free: 62 MB / 330.7 MB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.0002277/0.233, allocations: 242.4 kB / 411.4 MB, free: 61.87 MB / 330.7 MB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.0004192/0.2334, allocations: 188.4 kB / 411.5 MB, free: 61.87 MB / 330.7 MB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.002378/0.2358, allocations: 1.683 MB / 413.2 MB, free: 61.7 MB / 330.7 MB
Notification: Performance of preOpt findStateOrder (simulation): time 2.404e-05/0.2358, allocations: 192 / 413.2 MB, free: 61.7 MB / 330.7 MB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.0001068/0.2359, allocations: 74.19 kB / 413.3 MB, free: 61.7 MB / 330.7 MB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 2.791e-05/0.2359, allocations: 44 kB / 413.3 MB, free: 61.7 MB / 330.7 MB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.002316/0.2383, allocations: 1.723 MB / 415.1 MB, free: 61.68 MB / 330.7 MB
Warning: The model contains alias variables with redundant start and/or conflicting nominal values. It is recommended to resolve the conflicts, because otherwise the system could be hard to solve. To print the conflicting alias sets and the chosen candidates please use -d=aliasConflicts.
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.005682/0.2439, allocations: 5.089 MB / 420.2 MB, free: 59.41 MB / 330.7 MB
Notification: Performance of preOpt comSubExp (simulation): time 0.002607/0.2466, allocations: 2.105 MB / 422.3 MB, free: 58.93 MB / 330.7 MB
Notification: Performance of preOpt resolveLoops (simulation): time 0.0005603/0.2471, allocations: 0.5255 MB / 422.8 MB, free: 58.8 MB / 330.7 MB
Notification: Performance of preOpt evalFunc (simulation): time 0.004425/0.2515, allocations: 4.203 MB / 427 MB, free: 56.86 MB / 330.7 MB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 2.154e-05/0.2516, allocations: 58.31 kB / 427.1 MB, free: 56.79 MB / 330.7 MB
Notification: Performance of pre-optimization done (n=122): time 2.254e-06/0.2516, allocations: 2.844 kB / 427.1 MB, free: 56.79 MB / 330.7 MB
Notification: Performance of matching and sorting (n=150): time 0.01165/0.2632, allocations: 5.148 MB / 432.2 MB, free: 51.74 MB / 330.7 MB
Notification: Performance of inlineWhenForInitialization (initialization): time 2.872e-05/0.2632, allocations: 94.42 kB / 432.3 MB, free: 51.63 MB / 330.7 MB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0005365/0.2638, allocations: 0.8861 MB / 433.2 MB, free: 50.75 MB / 330.7 MB
Notification: Performance of collectPreVariables (initialization): time 5.3e-05/0.2638, allocations: 53.7 kB / 433.2 MB, free: 50.7 MB / 330.7 MB
Notification: Performance of collectInitialEqns (initialization): time 0.000255/0.2641, allocations: 0.9128 MB / 434.1 MB, free: 49.88 MB / 330.7 MB
Notification: Performance of collectInitialBindings (initialization): time 0.000207/0.2643, allocations: 0.5384 MB / 434.7 MB, free: 49.42 MB / 330.7 MB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.0002732/0.2646, allocations: 373.1 kB / 435 MB, free: 49.05 MB / 330.7 MB
Notification: Performance of setup shared object (initialization): time 7.445e-05/0.2646, allocations: 0.5355 MB / 435.6 MB, free: 48.5 MB / 330.7 MB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.0004457/0.2651, allocations: 344.7 kB / 435.9 MB, free: 48.16 MB / 330.7 MB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.0006485/0.2657, allocations: 1.351 MB / 437.3 MB, free: 46.36 MB / 330.7 MB
Warning: It was not possible to determine if the initialization problem is consistent, because of not evaluable parameters/start values during compile time: solution_at_constant_temperature.temperature = solution_at_constant_temperature.temperature_start (fixedTemperature.T = solution_at_constant_temperature.temperature_start)
Notification: Performance of analyzeInitialSystem (initialization): time 0.001353/0.2671, allocations: 1.912 MB / 439.2 MB, free: 44 MB / 330.7 MB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 7.594e-06/0.2671, allocations: 8 kB / 439.2 MB, free: 44 MB / 330.7 MB
Notification: Performance of matching and sorting (n=258) (initialization): time 0.003679/0.2708, allocations: 2.209 MB / 441.4 MB, free: 41.76 MB / 330.7 MB
Notification: Performance of prepare postOptimizeDAE: time 2.199e-05/0.2708, allocations: 16 kB / 441.4 MB, free: 41.75 MB / 330.7 MB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 1.858e-05/0.2708, allocations: 20 kB / 441.4 MB, free: 41.73 MB / 330.7 MB
Notification: Performance of postOpt tearingSystem (initialization): time 0.004097/0.2749, allocations: 1.103 MB / 442.5 MB, free: 40.61 MB / 330.7 MB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.000967/0.2759, allocations: 0.5202 MB / 443.1 MB, free: 40.09 MB / 330.7 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 0.005386/0.2813, allocations: 9.113 MB / 452.2 MB, free: 30.51 MB / 330.7 MB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0005487/0.2818, allocations: 71.95 kB / 452.2 MB, free: 30.44 MB / 330.7 MB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 9.121e-05/0.2819, allocations: 112 kB / 452.4 MB, free: 30.33 MB / 330.7 MB
Warning: The initial conditions are over specified. The following 1 initial equations are redundant, so they are removed from the initialization system:
         solution_at_constant_temperature.temperature = solution_at_constant_temperature.temperature_start.
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 107
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (241):
 * Single equations (assignments): 237
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 4
 * Mixed (continuous/discrete) equation systems: 0
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 2 systems
   {(3,6,77.8%), (1,3,100.0%)}
 * Non-linear torn systems (#iteration vars, #inner vars): 2 systems
   {(1,3), (1,3)}
Notification: Performance of prepare postOptimizeDAE: time 0.0002851/0.2822, allocations: 299 kB / 452.6 MB, free: 30.04 MB / 330.7 MB
Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0001842/0.2824, allocations: 179.2 kB / 452.8 MB, free: 29.87 MB / 330.7 MB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.003866/0.2862, allocations: 2.166 MB / 455 MB, free: 27.64 MB / 330.7 MB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 6.773e-06/0.2862, allocations: 12 kB / 455 MB, free: 27.62 MB / 330.7 MB
Notification: Performance of postOpt constantLinearSystem (simulation): time 5.14e-06/0.2862, allocations: 8 kB / 455 MB, free: 27.62 MB / 330.7 MB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 9.518e-06/0.2863, allocations: 11.91 kB / 455 MB, free: 27.61 MB / 330.7 MB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.002439/0.2887, allocations: 1.945 MB / 457 MB, free: 25.61 MB / 330.7 MB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 8.075e-06/0.2887, allocations: 4.312 kB / 457 MB, free: 25.61 MB / 330.7 MB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0007183/0.2894, allocations: 315.6 kB / 457.3 MB, free: 25.3 MB / 330.7 MB
Notification: Performance of postOpt tearingSystem (simulation): time 0.004765/0.2942, allocations: 1.214 MB / 458.5 MB, free: 24.06 MB / 330.7 MB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 9.605e-05/0.2943, allocations: 39.98 kB / 458.5 MB, free: 24.02 MB / 330.7 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 0.005583/0.2999, allocations: 10.72 MB / 469.2 MB, free: 12.71 MB / 330.7 MB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 3.547e-06/0.2999, allocations: 3.938 kB / 469.3 MB, free: 12.71 MB / 330.7 MB
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.00407/0.3039, allocations: 2.304 MB / 471.6 MB, free: 10.32 MB / 330.7 MB
Notification: Performance of postOpt removeConstants (simulation): time 0.0001869/0.3041, allocations: 127 kB / 471.7 MB, free: 10.2 MB / 330.7 MB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0001095/0.3042, allocations: 35.98 kB / 471.7 MB, free: 10.16 MB / 330.7 MB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0003653/0.3046, allocations: 32 kB / 471.7 MB, free: 10.13 MB / 330.7 MB
Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0002078/0.3048, allocations: 127.4 kB / 471.9 MB, free: 10.01 MB / 330.7 MB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 5.425e-05/0.3049, allocations: 55.92 kB / 471.9 MB, free: 9.957 MB / 330.7 MB
Notification: Performance of sorting global known variables: time 0.0003886/0.3052, allocations: 0.5135 MB / 472.4 MB, free: 9.434 MB / 330.7 MB
Notification: Performance of sort global known variables: time 8e-08/0.3052, allocations: 3.281 kB / 472.4 MB, free: 9.434 MB / 330.7 MB
Notification: Performance of remove unused functions: time 0.00219/0.3074, allocations: 1.066 MB / 473.5 MB, free: 8.402 MB / 330.7 MB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 12
 * Number of states: 7 (A1.logn,B1.logn,H2O.logn,A.logn,B.logn,H2O1.amountOfBonds,H2O1.logn)
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (137):
 * Single equations (assignments): 132
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 5
 * Mixed (continuous/discrete) equation systems: 0
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 2 systems
   {(1,3,100.0%), (2,7,100.0%)}
 * Non-linear torn systems (#iteration vars, #inner vars): 3 systems
   {(1,3), (1,1), (2,3)}
Notification: Performance of Backend phase and start with SimCode phase: time 0.001297/0.3087, allocations: 1.16 MB / 474.7 MB, free: 7.367 MB / 330.7 MB
Notification: Performance of simCode: created initialization part: time 0.001793/0.3105, allocations: 1.957 MB / 476.6 MB, free: 5.344 MB / 330.7 MB
Notification: Performance of simCode: created event and clocks part: time 2.174e-06/0.3105, allocations: 0 / 476.6 MB, free: 5.344 MB / 330.7 MB
Notification: Performance of simCode: created simulation system equations: time 0.0009322/0.3115, allocations: 1.475 MB / 478.1 MB, free: 3.773 MB / 330.7 MB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0008439/0.3123, allocations: 351.4 kB / 478.4 MB, free: 3.438 MB / 330.7 MB
Error: Error parsing unit kDa: Unit not found
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.003509/0.3158, allocations: 2.811 MB / 481.3 MB, free: 0.5352 MB / 330.7 MB
Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0001829/0.316, allocations: 292.5 kB / 481.5 MB, free: 224 kB / 330.7 MB
Notification: Performance of simCode: alias equations: time 0.0007073/0.3167, allocations: 322.9 kB / 481.9 MB, free: 15.9 MB / 346.7 MB
Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0003252/0.317, allocations: 192.4 kB / 482 MB, free: 15.71 MB / 346.7 MB
Notification: Performance of SimCode: time 1.372e-06/0.317, allocations: 0 / 482 MB, free: 15.71 MB / 346.7 MB
Notification: Performance of Templates: time 0.03909/0.3561, allocations: 38.29 MB / 0.5081 GB, free: 9.723 MB / 378.7 MB
"
[Timeout remaining time 660]
make -j1 -f Chemical_master_Chemical.Obsolete.Examples.ExothermicReaction.makefile [Timeout 660]
(rm -f Chemical_master_Chemical.Obsolete.Examples.ExothermicReaction.pipe ; mkfifo Chemical_master_Chemical.Obsolete.Examples.ExothermicReaction.pipe ; head -c 1048576 < Chemical_master_Chemical.Obsolete.Examples.ExothermicReaction.pipe >> ../files/Chemical_master_Chemical.Obsolete.Examples.ExothermicReaction.sim & ./Chemical_master_Chemical.Obsolete.Examples.ExothermicReaction -abortSlowSimulation -alarm=240  -lv LOG_STATS > Chemical_master_Chemical.Obsolete.Examples.ExothermicReaction.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 4.251991401892155]