Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_master_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.0009218/0.0009218, allocations: 93.06 kB / 19.65 MB, free: 272 kB / 13.93 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.0009784/0.0009784, allocations: 165 kB / 23.02 MB, free: 1.543 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9557/0.9557, allocations: 177.1 MB / 203.4 MB, free: 5.645 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo): time 0.09225/0.09225, allocations: 17.45 MB / 277.4 MB, free: 11.57 MB / 266.7 MB
"
[Timeout remaining time 180]
Using package Chemical with version 2.0.1 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG")
translateModel(Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.734e-06/1.734e-06, allocations: 0 / 353.5 MB, free: 9.848 MB / 282.7 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 3.03e-05/3.203e-05, allocations: 9.484 kB / 353.6 MB, free: 9.84 MB / 282.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Obsolete.mo:12638:6-12638:65:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Obsolete.mo:12638:6-12638:65:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"system\" component but
an inner \"system\" component is not defined.
For simulation drag Modelica.Fluid.System into your model
to specify system properties.
Notification: Performance of NFInst.instantiate(Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG): time 0.04873/0.04876, allocations: 26.91 MB / 380.5 MB, free: 15.06 MB / 314.7 MB
Notification: Performance of NFInst.instExpressions: time 0.005648/0.05441, allocations: 6.352 MB / 386.8 MB, free: 8.691 MB / 314.7 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.0002731/0.05468, allocations: 11.88 kB / 386.8 MB, free: 8.68 MB / 314.7 MB
Notification: Performance of NFTyping.typeComponents: time 0.0004372/0.05512, allocations: 150.9 kB / 387 MB, free: 8.531 MB / 314.7 MB
Notification: Performance of NFTyping.typeBindings: time 0.0005829/0.0557, allocations: 273.7 kB / 387.2 MB, free: 8.262 MB / 314.7 MB
Notification: Performance of NFTyping.typeClassSections: time 0.00182/0.05752, allocations: 1.001 MB / 388.2 MB, free: 7.254 MB / 314.7 MB
Notification: Performance of NFFlatten.flatten: time 0.0005477/0.05807, allocations: 0.5252 MB / 388.8 MB, free: 6.727 MB / 314.7 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.0002573/0.05833, allocations: 173.1 kB / 388.9 MB, free: 6.555 MB / 314.7 MB
Notification: Performance of NFEvalConstants.evaluate: time 0.000272/0.0586, allocations: 327.3 kB / 389.3 MB, free: 6.234 MB / 314.7 MB
Notification: Performance of NFSimplifyModel.simplify: time 0.0003281/0.05893, allocations: 235.4 kB / 389.5 MB, free: 6.004 MB / 314.7 MB
Notification: Performance of NFPackage.collectConstants: time 6.305e-05/0.05899, allocations: 28 kB / 389.5 MB, free: 5.977 MB / 314.7 MB
Notification: Performance of NFFlatten.collectFunctions: time 0.00115/0.06014, allocations: 0.5185 MB / 390 MB, free: 5.457 MB / 314.7 MB
Notification: Performance of NFScalarize.scalarize: time 0.0001425/0.06028, allocations: 91.66 kB / 390.1 MB, free: 5.367 MB / 314.7 MB
Notification: Performance of NFVerifyModel.verify: time 0.0001575/0.06044, allocations: 147.6 kB / 390.3 MB, free: 5.223 MB / 314.7 MB
Notification: Performance of NFConvertDAE.convert: time 0.001918/0.06236, allocations: 1.035 MB / 391.3 MB, free: 4.184 MB / 314.7 MB
Notification: Performance of FrontEnd - DAE generated: time 1.288e-05/0.06237, allocations: 3.984 kB / 391.3 MB, free: 4.18 MB / 314.7 MB
Notification: Performance of FrontEnd: time 2.254e-06/0.06237, allocations: 0 / 391.3 MB, free: 4.18 MB / 314.7 MB
Notification: Performance of Transformations before backend: time 1.788e-05/0.06239, allocations: 0 / 391.3 MB, free: 4.18 MB / 314.7 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 65
 * Number of variables: 65
Notification: Performance of Generate backend data structure: time 0.001061/0.06345, allocations: 0.8335 MB / 392.1 MB, free: 3.305 MB / 314.7 MB
Notification: Performance of prepare preOptimizeDAE: time 3.956e-05/0.06349, allocations: 11.97 kB / 392.1 MB, free: 3.293 MB / 314.7 MB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0005225/0.06401, allocations: 179.7 kB / 392.3 MB, free: 3.117 MB / 314.7 MB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.0004912/0.06451, allocations: 348.3 kB / 392.7 MB, free: 2.75 MB / 314.7 MB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 1.911e-05/0.06452, allocations: 21.03 kB / 392.7 MB, free: 2.73 MB / 314.7 MB
Notification: Performance of preOpt expandDerOperator (simulation): time 3.689e-05/0.06456, allocations: 28.36 kB / 392.7 MB, free: 2.703 MB / 314.7 MB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.0004262/0.06499, allocations: 396.3 kB / 393.1 MB, free: 2.27 MB / 314.7 MB
Notification: Performance of preOpt findStateOrder (simulation): time 1.62e-05/0.065, allocations: 7.938 kB / 393.1 MB, free: 2.262 MB / 314.7 MB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 2.847e-05/0.06503, allocations: 8 kB / 393.1 MB, free: 2.254 MB / 314.7 MB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 1.331e-05/0.06505, allocations: 8 kB / 393.1 MB, free: 2.246 MB / 314.7 MB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0006341/0.06568, allocations: 422.5 kB / 393.5 MB, free: 1.828 MB / 314.7 MB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.001607/0.06729, allocations: 2.012 MB / 395.5 MB, free: 15.73 MB / 330.7 MB
Notification: Performance of preOpt comSubExp (simulation): time 0.0002316/0.06752, allocations: 98.95 kB / 395.6 MB, free: 15.62 MB / 330.7 MB
Notification: Performance of preOpt resolveLoops (simulation): time 0.0001018/0.06762, allocations: 55.66 kB / 395.7 MB, free: 15.57 MB / 330.7 MB
Notification: Performance of preOpt evalFunc (simulation): time 0.001193/0.06881, allocations: 1.003 MB / 396.7 MB, free: 14.54 MB / 330.7 MB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 2.895e-05/0.06884, allocations: 33.39 kB / 396.7 MB, free: 14.5 MB / 330.7 MB
Notification: Performance of pre-optimization done (n=9): time 1.683e-06/0.06884, allocations: 0 / 396.7 MB, free: 14.5 MB / 330.7 MB
Notification: Performance of matching and sorting (n=9): time 0.0003037/0.06915, allocations: 133.3 kB / 396.9 MB, free: 14.36 MB / 330.7 MB
Notification: Performance of inlineWhenForInitialization (initialization): time 3.211e-05/0.06918, allocations: 59.41 kB / 396.9 MB, free: 14.29 MB / 330.7 MB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.000289/0.06947, allocations: 438.5 kB / 397.4 MB, free: 13.85 MB / 330.7 MB
Notification: Performance of collectPreVariables (initialization): time 1.468e-05/0.06948, allocations: 33.7 kB / 397.4 MB, free: 13.81 MB / 330.7 MB
Notification: Performance of collectInitialEqns (initialization): time 0.00016/0.06964, allocations: 322.3 kB / 397.7 MB, free: 13.49 MB / 330.7 MB
Notification: Performance of collectInitialBindings (initialization): time 3.998e-05/0.06968, allocations: 35.73 kB / 397.7 MB, free: 13.45 MB / 330.7 MB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.0001094/0.06979, allocations: 87.25 kB / 397.8 MB, free: 13.36 MB / 330.7 MB
Notification: Performance of setup shared object (initialization): time 0.0001362/0.06993, allocations: 0.5237 MB / 398.3 MB, free: 12.82 MB / 330.7 MB
Notification: Performance of preBalanceInitialSystem (initialization): time 6.276e-05/0.06999, allocations: 31.97 kB / 398.4 MB, free: 12.79 MB / 330.7 MB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.0001946/0.07019, allocations: 341 kB / 398.7 MB, free: 12.31 MB / 330.7 MB
Notification: Performance of analyzeInitialSystem (initialization): time 0.0003459/0.07053, allocations: 432.6 kB / 399.1 MB, free: 11.74 MB / 330.7 MB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 3.647e-06/0.07053, allocations: 0 / 399.1 MB, free: 11.74 MB / 330.7 MB
Notification: Performance of matching and sorting (n=38) (initialization): time 0.0004246/0.07096, allocations: 325.7 kB / 399.4 MB, free: 11.42 MB / 330.7 MB
Notification: Performance of prepare postOptimizeDAE: time 1.938e-05/0.07098, allocations: 12 kB / 399.5 MB, free: 11.41 MB / 330.7 MB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 8.847e-06/0.07099, allocations: 8 kB / 399.5 MB, free: 11.4 MB / 330.7 MB
Notification: Performance of postOpt tearingSystem (initialization): time 2.358e-05/0.07101, allocations: 11.94 kB / 399.5 MB, free: 11.39 MB / 330.7 MB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0001654/0.07118, allocations: 87.89 kB / 399.6 MB, free: 11.3 MB / 330.7 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 1.332e-05/0.07119, allocations: 19.88 kB / 399.6 MB, free: 11.28 MB / 330.7 MB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0001281/0.07132, allocations: 35.73 kB / 399.6 MB, free: 11.25 MB / 330.7 MB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 3.171e-05/0.07135, allocations: 31.98 kB / 399.6 MB, free: 11.21 MB / 330.7 MB
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 35
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (38):
 * Single equations (assignments): 38
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of prepare postOptimizeDAE: time 9.989e-05/0.07145, allocations: 188.3 kB / 399.8 MB, free: 11.02 MB / 330.7 MB
Notification: Performance of postOpt lateInlineFunction (simulation): time 4.238e-05/0.07149, allocations: 39.77 kB / 399.9 MB, free: 10.98 MB / 330.7 MB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0003103/0.0718, allocations: 251.7 kB / 400.1 MB, free: 10.7 MB / 330.7 MB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 2.043e-06/0.0718, allocations: 0 / 400.1 MB, free: 10.7 MB / 330.7 MB
Notification: Performance of postOpt constantLinearSystem (simulation): time 3.316e-06/0.07181, allocations: 0 / 400.1 MB, free: 10.7 MB / 330.7 MB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 2.815e-06/0.07181, allocations: 0 / 400.1 MB, free: 10.7 MB / 330.7 MB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.0003431/0.07215, allocations: 0.5508 MB / 400.7 MB, free: 10.1 MB / 330.7 MB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 2.214e-06/0.07216, allocations: 4.062 kB / 400.7 MB, free: 10.09 MB / 330.7 MB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 8.966e-06/0.07216, allocations: 0 / 400.7 MB, free: 10.09 MB / 330.7 MB
Notification: Performance of postOpt tearingSystem (simulation): time 2.054e-06/0.07217, allocations: 0 / 400.7 MB, free: 10.09 MB / 330.7 MB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 6.673e-06/0.07217, allocations: 4 kB / 400.7 MB, free: 10.09 MB / 330.7 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 2.845e-06/0.07218, allocations: 3.984 kB / 400.7 MB, free: 10.09 MB / 330.7 MB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 1.332e-06/0.07218, allocations: 0 / 400.7 MB, free: 10.09 MB / 330.7 MB
Notification: Performance of postOpt symbolicJacobian (simulation): time 7.434e-05/0.07225, allocations: 104.1 kB / 400.8 MB, free: 9.961 MB / 330.7 MB
Notification: Performance of postOpt removeConstants (simulation): time 3.139e-05/0.07228, allocations: 31.8 kB / 400.8 MB, free: 9.93 MB / 330.7 MB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 2.667e-05/0.07231, allocations: 3.953 kB / 400.8 MB, free: 9.926 MB / 330.7 MB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 3.846e-05/0.07235, allocations: 4 kB / 400.8 MB, free: 9.922 MB / 330.7 MB
Notification: Performance of postOpt findZeroCrossings (simulation): time 1.373e-05/0.07236, allocations: 0 / 400.8 MB, free: 9.922 MB / 330.7 MB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 2.795e-06/0.07237, allocations: 7.969 kB / 400.8 MB, free: 9.914 MB / 330.7 MB
Notification: Performance of sorting global known variables: time 0.0002364/0.0726, allocations: 307 kB / 401.1 MB, free: 9.613 MB / 330.7 MB
Notification: Performance of sort global known variables: time 7e-08/0.0726, allocations: 0 / 401.1 MB, free: 9.613 MB / 330.7 MB
Notification: Performance of remove unused functions: time 0.0004107/0.07301, allocations: 183.3 kB / 401.3 MB, free: 9.434 MB / 330.7 MB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 1
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (1):
 * Single equations (assignments): 1
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of Backend phase and start with SimCode phase: time 0.0004578/0.07347, allocations: 306.4 kB / 401.6 MB, free: 9.121 MB / 330.7 MB
Notification: Performance of simCode: created initialization part: time 0.000277/0.07375, allocations: 133.3 kB / 401.7 MB, free: 8.988 MB / 330.7 MB
Notification: Performance of simCode: created event and clocks part: time 2.014e-06/0.07375, allocations: 0 / 401.7 MB, free: 8.988 MB / 330.7 MB
Notification: Performance of simCode: created simulation system equations: time 9.769e-06/0.07376, allocations: 7.688 kB / 401.7 MB, free: 8.977 MB / 330.7 MB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0003108/0.07407, allocations: 88.28 kB / 401.8 MB, free: 8.898 MB / 330.7 MB
Error: Error parsing unit kDa: Unit not found
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.001132/0.0752, allocations: 0.5296 MB / 402.4 MB, free: 8.34 MB / 330.7 MB
Notification: Performance of simCode: some other stuff during SimCode phase: time 5e-05/0.07525, allocations: 96.53 kB / 402.5 MB, free: 8.227 MB / 330.7 MB
Notification: Performance of simCode: alias equations: time 0.0001716/0.07542, allocations: 90.31 kB / 402.5 MB, free: 8.141 MB / 330.7 MB
Notification: Performance of simCode: all other stuff during SimCode phase: time 6.065e-05/0.07548, allocations: 44.48 kB / 402.6 MB, free: 8.098 MB / 330.7 MB
Notification: Performance of SimCode: time 8.32e-07/0.07549, allocations: 0 / 402.6 MB, free: 8.098 MB / 330.7 MB
Notification: Performance of Templates: time 0.007886/0.08337, allocations: 6.17 MB / 408.8 MB, free: 1.992 MB / 330.7 MB
"
[Timeout remaining time 660]
make -j1 -f Chemical_master_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG.makefile [Timeout 660]
(rm -f Chemical_master_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG.pipe ; mkfifo Chemical_master_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG.pipe ; head -c 1048576 < Chemical_master_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG.pipe >> ../files/Chemical_master_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG.sim & ./Chemical_master_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG -abortSlowSimulation -alarm=240  -lv LOG_STATS > Chemical_master_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 3.2063038609921932]