Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_master_Chemical.Examples.debug.EnzymeKinetics3.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001244/0.001244, allocations: 93.06 kB / 19.65 MB, free: 276 kB / 13.93 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.0009578/0.0009578, allocations: 165 kB / 23.02 MB, free: 1.551 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9714/0.9714, allocations: 177.1 MB / 203.4 MB, free: 5.645 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo): time 0.1037/0.1037, allocations: 17.47 MB / 277.4 MB, free: 11.56 MB / 266.7 MB
"
[Timeout remaining time 180]
Using package Chemical with version 2.0.1 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Chemical.Examples.debug.EnzymeKinetics3,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Examples.debug.EnzymeKinetics3")
translateModel(Chemical.Examples.debug.EnzymeKinetics3,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Examples.debug.EnzymeKinetics3") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.303e-06/1.303e-06, allocations: 0 / 353.5 MB, free: 9.852 MB / 282.7 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 1.712e-05/1.843e-05, allocations: 8.781 kB / 353.6 MB, free: 9.844 MB / 282.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1586:5-1586:64:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1586:5-1586:64:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"system\" component but
an inner \"system\" component is not defined.
For simulation drag Modelica.Fluid.System into your model
to specify system properties.
Notification: Performance of NFInst.instantiate(Chemical.Examples.debug.EnzymeKinetics3): time 0.03726/0.03728, allocations: 39.62 MB / 393.2 MB, free: 2.316 MB / 314.7 MB
Notification: Performance of NFInst.instExpressions: time 0.01472/0.052, allocations: 11.78 MB / 405 MB, free: 6.484 MB / 330.7 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.002194/0.0542, allocations: 111.1 kB / 405.1 MB, free: 6.375 MB / 330.7 MB
Notification: Performance of NFTyping.typeComponents: time 0.00356/0.05776, allocations: 2.14 MB / 407.2 MB, free: 4.223 MB / 330.7 MB
Notification: Performance of NFTyping.typeBindings: time 0.003659/0.06142, allocations: 1.966 MB / 409.2 MB, free: 2.242 MB / 330.7 MB
Notification: Performance of NFTyping.typeClassSections: time 0.1648/0.2262, allocations: 4.544 MB / 413.7 MB, free: 36.22 MB / 330.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1332:3-1332:55:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.MM has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1333:3-1333:87:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.Hf has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1334:3-1334:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.H0 has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.blow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.bhigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1341:3-1342:83:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.z has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1344:3-1344:89:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.phase has no value, and is fixed during initialization (fixed=true), using available start value (start=Chemical.Interfaces.Phase.Gas) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1347:3-1347:140:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.VmBase has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1348:3-1348:137:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.VmExcess has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
Notification: Performance of NFFlatten.flatten: time 0.006572/0.2328, allocations: 4.798 MB / 418.5 MB, free: 35.26 MB / 330.7 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.001167/0.2339, allocations: 0.8169 MB / 419.3 MB, free: 35.03 MB / 330.7 MB
Notification: Performance of NFEvalConstants.evaluate: time 0.003454/0.2374, allocations: 2.636 MB / 422 MB, free: 34.81 MB / 330.7 MB
Notification: Performance of NFSimplifyModel.simplify: time 0.002643/0.24, allocations: 2.111 MB / 424.1 MB, free: 34.64 MB / 330.7 MB
Notification: Performance of NFPackage.collectConstants: time 0.0007239/0.2407, allocations: 407.3 kB / 424.5 MB, free: 34.64 MB / 330.7 MB
Notification: Performance of NFFlatten.collectFunctions: time 0.00403/0.2448, allocations: 2.141 MB / 426.6 MB, free: 34.55 MB / 330.7 MB
Notification: Performance of NFScalarize.scalarize: time 0.0006912/0.2455, allocations: 1.385 MB / 428 MB, free: 33.96 MB / 330.7 MB
Notification: Performance of NFVerifyModel.verify: time 0.001553/0.247, allocations: 1.497 MB / 429.5 MB, free: 33.34 MB / 330.7 MB
Notification: Performance of NFConvertDAE.convert: time 0.005999/0.253, allocations: 5.672 MB / 435.2 MB, free: 31.09 MB / 330.7 MB
Notification: Performance of FrontEnd - DAE generated: time 3.567e-06/0.253, allocations: 0 / 435.2 MB, free: 31.09 MB / 330.7 MB
Notification: Performance of FrontEnd: time 1.583e-06/0.253, allocations: 0 / 435.2 MB, free: 31.09 MB / 330.7 MB
Notification: Performance of Transformations before backend: time 7.501e-05/0.2531, allocations: 3 kB / 435.2 MB, free: 31.09 MB / 330.7 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 1270
 * Number of variables: 1270
Notification: Performance of Generate backend data structure: time 0.005751/0.2588, allocations: 5.854 MB / 441 MB, free: 27.2 MB / 330.7 MB
Notification: Performance of prepare preOptimizeDAE: time 3.981e-05/0.2589, allocations: 7.781 kB / 441 MB, free: 27.2 MB / 330.7 MB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.002211/0.2611, allocations: 2.17 MB / 443.2 MB, free: 25.12 MB / 330.7 MB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.002128/0.2632, allocations: 2.547 MB / 445.8 MB, free: 22.66 MB / 330.7 MB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.0002733/0.2635, allocations: 0.6317 MB / 446.4 MB, free: 21.96 MB / 330.7 MB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.0003243/0.2638, allocations: 397.4 kB / 446.8 MB, free: 21.58 MB / 330.7 MB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.005063/0.2689, allocations: 5.793 MB / 452.6 MB, free: 15.78 MB / 330.7 MB
Notification: Performance of preOpt findStateOrder (simulation): time 4.93e-05/0.2689, allocations: 192 / 452.6 MB, free: 15.78 MB / 330.7 MB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.0001816/0.2691, allocations: 162.1 kB / 452.7 MB, free: 15.63 MB / 330.7 MB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 0.00034/0.2695, allocations: 0.5937 MB / 453.3 MB, free: 15.04 MB / 330.7 MB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.00703/0.2765, allocations: 7.475 MB / 460.8 MB, free: 7.551 MB / 330.7 MB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.02286/0.2993, allocations: 20.12 MB / 480.9 MB, free: 3.781 MB / 346.7 MB
Notification: Performance of preOpt comSubExp (simulation): time 0.002327/0.3017, allocations: 1.813 MB / 482.7 MB, free: 1.988 MB / 346.7 MB
Notification: Performance of preOpt resolveLoops (simulation): time 0.001497/0.3032, allocations: 1.3 MB / 484 MB, free: 0.6836 MB / 346.7 MB
Notification: Performance of preOpt evalFunc (simulation): time 0.01418/0.3174, allocations: 12.33 MB / 496.4 MB, free: 4.426 MB / 362.7 MB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 3.887e-05/0.3174, allocations: 59.33 kB / 496.4 MB, free: 4.359 MB / 362.7 MB
Notification: Performance of pre-optimization done (n=227): time 3.477e-06/0.3174, allocations: 0 / 496.4 MB, free: 4.359 MB / 362.7 MB
Notification: Performance of matching and sorting (n=324): time 0.04012/0.3575, allocations: 20.7 MB / 0.505 GB, free: 15.73 MB / 394.7 MB
Notification: Performance of inlineWhenForInitialization (initialization): time 4.538e-05/0.3576, allocations: 73.41 kB / 0.5051 GB, free: 15.64 MB / 394.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1348:3-1348:137:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.VmExcess has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1347:3-1347:140:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.VmBase has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1344:3-1344:89:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.phase has no value, and is fixed during initialization (fixed=true), using available start value (start=Chemical.Interfaces.Phase.Gas) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1341:3-1342:83:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.z has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.bhigh[3] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.bhigh[2] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.bhigh[1] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[7] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[6] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[5] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[4] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[3] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[2] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[1] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.blow[3] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.blow[2] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.blow[1] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[7] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[6] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[5] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[4] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[3] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[2] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[1] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1334:3-1334:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.H0 has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1333:3-1333:87:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.Hf has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1332:3-1332:55:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.MM has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.002419/0.36, allocations: 2.417 MB / 0.5074 GB, free: 13.21 MB / 394.7 MB
Notification: Performance of collectPreVariables (initialization): time 0.0002829/0.3603, allocations: 65.7 kB / 0.5075 GB, free: 13.14 MB / 394.7 MB
Notification: Performance of collectInitialEqns (initialization): time 0.001594/0.3618, allocations: 2.473 MB / 0.5099 GB, free: 10.66 MB / 394.7 MB
Notification: Performance of collectInitialBindings (initialization): time 0.0008618/0.3627, allocations: 1.146 MB / 0.511 GB, free: 9.527 MB / 394.7 MB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.00145/0.3642, allocations: 1.022 MB / 0.512 GB, free: 8.496 MB / 394.7 MB
Notification: Performance of setup shared object (initialization): time 0.0001208/0.3643, allocations: 476.8 kB / 0.5125 GB, free: 8.027 MB / 394.7 MB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.002584/0.3669, allocations: 1.919 MB / 0.5144 GB, free: 6.109 MB / 394.7 MB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.003634/0.3705, allocations: 3.605 MB / 0.5179 GB, free: 1.82 MB / 394.7 MB
Notification: It was not possible to check the given initialization system for consistency symbolically, because the relevant equations are part of an algebraic loop. This is not supported yet.
Notification: Performance of analyzeInitialSystem (initialization): time 0.009226/0.3797, allocations: 8.348 MB / 0.526 GB, free: 8.977 MB / 410.7 MB
Warning: It was not possible to solve the under-determined initial system (301 equations and 329 variables)
Error: No system for the symbolic initialization was generated
"
[Timeout remaining time 660]
[Calling sys.exit(0), Time elapsed: 2.242207109928131]