Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_master_Chemical.Examples.debug.EnzymeKinetics2.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001298/0.001298, allocations: 93.06 kB / 19.65 MB, free: 272 kB / 13.93 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001403/0.001403, allocations: 165 kB / 23.02 MB, free: 1.547 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9761/0.9761, allocations: 177.1 MB / 203.4 MB, free: 5.648 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo): time 0.1026/0.1026, allocations: 17.46 MB / 277.4 MB, free: 11.57 MB / 266.7 MB
"
[Timeout remaining time 180]
Using package Chemical with version 2.0.1 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Chemical.Examples.debug.EnzymeKinetics2,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Examples.debug.EnzymeKinetics2")
translateModel(Chemical.Examples.debug.EnzymeKinetics2,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Examples.debug.EnzymeKinetics2") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.613e-06/1.613e-06, allocations: 0 / 353.5 MB, free: 9.855 MB / 282.7 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 2.656e-05/2.817e-05, allocations: 2.312 kB / 353.5 MB, free: 9.852 MB / 282.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1586:5-1586:64:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1586:5-1586:64:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"system\" component but
an inner \"system\" component is not defined.
For simulation drag Modelica.Fluid.System into your model
to specify system properties.
Notification: Performance of NFInst.instantiate(Chemical.Examples.debug.EnzymeKinetics2): time 0.05909/0.05911, allocations: 39.63 MB / 393.2 MB, free: 2.316 MB / 314.7 MB
Notification: Performance of NFInst.instExpressions: time 0.01639/0.0755, allocations: 11.78 MB / 405 MB, free: 6.488 MB / 330.7 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.003477/0.07898, allocations: 115.1 kB / 405.1 MB, free: 6.375 MB / 330.7 MB
Notification: Performance of NFTyping.typeComponents: time 0.005079/0.08406, allocations: 2.148 MB / 407.2 MB, free: 4.215 MB / 330.7 MB
Notification: Performance of NFTyping.typeBindings: time 0.0061/0.09016, allocations: 1.966 MB / 409.2 MB, free: 2.234 MB / 330.7 MB
Notification: Performance of NFTyping.typeClassSections: time 0.174/0.2641, allocations: 4.531 MB / 413.7 MB, free: 36.22 MB / 330.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1332:3-1332:55:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.MM has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1333:3-1333:87:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.Hf has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1334:3-1334:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.H0 has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.blow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.bhigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1341:3-1342:83:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.z has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1344:3-1344:89:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.phase has no value, and is fixed during initialization (fixed=true), using available start value (start=Chemical.Interfaces.Phase.Gas) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1347:3-1347:140:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.VmBase has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1348:3-1348:137:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.VmExcess has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
Notification: Performance of NFFlatten.flatten: time 0.007794/0.2719, allocations: 4.803 MB / 418.5 MB, free: 35.26 MB / 330.7 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.001635/0.2735, allocations: 0.8202 MB / 419.3 MB, free: 35.03 MB / 330.7 MB
Notification: Performance of NFEvalConstants.evaluate: time 0.006466/0.28, allocations: 2.634 MB / 422 MB, free: 34.81 MB / 330.7 MB
Notification: Performance of NFSimplifyModel.simplify: time 0.003983/0.284, allocations: 2.112 MB / 424.1 MB, free: 34.64 MB / 330.7 MB
Notification: Performance of NFPackage.collectConstants: time 0.0009292/0.2849, allocations: 407.8 kB / 424.5 MB, free: 34.64 MB / 330.7 MB
Notification: Performance of NFFlatten.collectFunctions: time 0.005177/0.2901, allocations: 2.14 MB / 426.6 MB, free: 34.56 MB / 330.7 MB
Notification: Performance of NFScalarize.scalarize: time 0.00113/0.2912, allocations: 1.38 MB / 428 MB, free: 33.95 MB / 330.7 MB
Notification: Performance of NFVerifyModel.verify: time 0.003273/0.2945, allocations: 1.493 MB / 429.5 MB, free: 33.34 MB / 330.7 MB
Notification: Performance of NFConvertDAE.convert: time 0.009727/0.3042, allocations: 5.674 MB / 435.2 MB, free: 31.08 MB / 330.7 MB
Notification: Performance of FrontEnd - DAE generated: time 5.69e-06/0.3042, allocations: 0 / 435.2 MB, free: 31.08 MB / 330.7 MB
Notification: Performance of FrontEnd: time 1.783e-06/0.3042, allocations: 0 / 435.2 MB, free: 31.08 MB / 330.7 MB
Notification: Performance of Transformations before backend: time 0.0002809/0.3045, allocations: 0 / 435.2 MB, free: 31.08 MB / 330.7 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 1270
 * Number of variables: 1270
Notification: Performance of Generate backend data structure: time 0.009048/0.3136, allocations: 5.859 MB / 441 MB, free: 27.18 MB / 330.7 MB
Notification: Performance of prepare preOptimizeDAE: time 5.255e-05/0.3136, allocations: 12.16 kB / 441 MB, free: 27.18 MB / 330.7 MB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.002952/0.3166, allocations: 2.173 MB / 443.2 MB, free: 25.11 MB / 330.7 MB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.003135/0.3197, allocations: 2.54 MB / 445.7 MB, free: 22.64 MB / 330.7 MB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.0003149/0.32, allocations: 0.6417 MB / 446.4 MB, free: 21.95 MB / 330.7 MB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.0003427/0.3204, allocations: 397.4 kB / 446.8 MB, free: 21.57 MB / 330.7 MB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.006715/0.3271, allocations: 5.786 MB / 452.6 MB, free: 15.77 MB / 330.7 MB
Notification: Performance of preOpt findStateOrder (simulation): time 5.632e-05/0.3271, allocations: 2.875 kB / 452.6 MB, free: 15.77 MB / 330.7 MB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.0001809/0.3273, allocations: 154.9 kB / 452.7 MB, free: 15.63 MB / 330.7 MB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 0.0003378/0.3276, allocations: 0.5979 MB / 453.3 MB, free: 15.03 MB / 330.7 MB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.008039/0.3357, allocations: 7.476 MB / 460.8 MB, free: 7.539 MB / 330.7 MB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.02674/0.3624, allocations: 20.12 MB / 480.9 MB, free: 3.77 MB / 346.7 MB
Notification: Performance of preOpt comSubExp (simulation): time 0.002996/0.3654, allocations: 1.816 MB / 482.7 MB, free: 1.977 MB / 346.7 MB
Notification: Performance of preOpt resolveLoops (simulation): time 0.001833/0.3673, allocations: 1.297 MB / 484 MB, free: 0.6719 MB / 346.7 MB
Notification: Performance of preOpt evalFunc (simulation): time 0.01549/0.3828, allocations: 12.33 MB / 496.4 MB, free: 4.41 MB / 362.7 MB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 5.45e-05/0.3828, allocations: 62.42 kB / 496.4 MB, free: 4.344 MB / 362.7 MB
Notification: Performance of pre-optimization done (n=227): time 3.597e-06/0.3828, allocations: 0 / 496.4 MB, free: 4.344 MB / 362.7 MB
Notification: Performance of matching and sorting (n=324): time 0.04767/0.4305, allocations: 20.69 MB / 0.505 GB, free: 15.71 MB / 394.7 MB
Notification: Performance of inlineWhenForInitialization (initialization): time 5.614e-05/0.4305, allocations: 76.03 kB / 0.5051 GB, free: 15.63 MB / 394.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1348:3-1348:137:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.VmExcess has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1347:3-1347:140:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.VmBase has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1344:3-1344:89:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.phase has no value, and is fixed during initialization (fixed=true), using available start value (start=Chemical.Interfaces.Phase.Gas) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1341:3-1342:83:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.z has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.bhigh[3] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.bhigh[2] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.bhigh[1] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[7] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[6] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[5] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[4] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[3] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[2] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[1] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.blow[3] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.blow[2] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.blow[1] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[7] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[6] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[5] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[4] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[3] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[2] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[1] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1334:3-1334:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.H0 has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1333:3-1333:87:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.Hf has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1332:3-1332:55:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.MM has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.003602/0.4341, allocations: 2.415 MB / 0.5074 GB, free: 13.2 MB / 394.7 MB
Notification: Performance of collectPreVariables (initialization): time 0.0009734/0.4351, allocations: 68.36 kB / 0.5075 GB, free: 13.12 MB / 394.7 MB
Notification: Performance of collectInitialEqns (initialization): time 0.001655/0.4368, allocations: 2.472 MB / 0.5099 GB, free: 10.64 MB / 394.7 MB
Notification: Performance of collectInitialBindings (initialization): time 0.001568/0.4383, allocations: 1.151 MB / 0.511 GB, free: 9.512 MB / 394.7 MB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.002066/0.4404, allocations: 1.02 MB / 0.512 GB, free: 8.48 MB / 394.7 MB
Notification: Performance of setup shared object (initialization): time 0.0001305/0.4405, allocations: 480.2 kB / 0.5125 GB, free: 8.012 MB / 394.7 MB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.003556/0.4441, allocations: 1.919 MB / 0.5144 GB, free: 6.094 MB / 394.7 MB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.004403/0.4485, allocations: 3.607 MB / 0.5179 GB, free: 1.805 MB / 394.7 MB
Notification: It was not possible to check the given initialization system for consistency symbolically, because the relevant equations are part of an algebraic loop. This is not supported yet.
Notification: Performance of analyzeInitialSystem (initialization): time 0.01249/0.461, allocations: 8.349 MB / 0.526 GB, free: 8.961 MB / 410.7 MB
Warning: It was not possible to solve the under-determined initial system (301 equations and 329 variables)
Error: No system for the symbolic initialization was generated
"
[Timeout remaining time 660]
[Calling sys.exit(0), Time elapsed: 2.2965718610212207]