Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_master_Chemical.Examples.SimpleReactionsWithJunction2.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001129/0.001129, allocations: 92.22 kB / 19.65 MB, free: 276 kB / 13.93 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001331/0.001331, allocations: 169 kB / 23.02 MB, free: 1.551 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9807/0.9807, allocations: 177.1 MB / 203.4 MB, free: 5.637 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo): time 0.1246/0.1246, allocations: 17.47 MB / 277.4 MB, free: 11.55 MB / 266.7 MB
"
[Timeout remaining time 180]
Using package Chemical with version 2.0.1 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Chemical.Examples.SimpleReactionsWithJunction2,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Examples.SimpleReactionsWithJunction2")
translateModel(Chemical.Examples.SimpleReactionsWithJunction2,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Examples.SimpleReactionsWithJunction2") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.423e-06/1.423e-06, allocations: 0 / 353.5 MB, free: 9.867 MB / 282.7 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 2.669e-05/2.811e-05, allocations: 14.12 kB / 353.5 MB, free: 9.852 MB / 282.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Processes.mo:1084:7-1084:40:writable] Warning: An inner declaration for outer component dropOfCommons could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Processes.mo:1084:7-1084:40:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"dropOfCommons\" component but
an inner \"dropOfCommons\" component is not defined.
Use Chemical.DropOfCommons in your model
to specify system properties.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1731:7-1731:66:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1731:7-1731:66:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"system\" component but
an inner \"system\" component is not defined.
For simulation drag Modelica.Fluid.System into your model
to specify system properties.
Notification: Performance of NFInst.instantiate(Chemical.Examples.SimpleReactionsWithJunction2): time 0.03792/0.03795, allocations: 39.99 MB / 393.5 MB, free: 1.957 MB / 314.7 MB
Notification: Performance of NFInst.instExpressions: time 0.01745/0.0554, allocations: 12.04 MB / 405.6 MB, free: 5.867 MB / 330.7 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.003646/0.05905, allocations: 95.31 kB / 405.7 MB, free: 5.773 MB / 330.7 MB
Notification: Performance of NFTyping.typeComponents: time 0.005361/0.06441, allocations: 2.265 MB / 407.9 MB, free: 3.496 MB / 330.7 MB
Notification: Performance of NFTyping.typeBindings: time 0.005703/0.07011, allocations: 2.013 MB / 409.9 MB, free: 1.469 MB / 330.7 MB
Notification: Performance of NFTyping.typeClassSections: time 0.1674/0.2375, allocations: 4.587 MB / 414.5 MB, free: 35.74 MB / 330.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1332:3-1332:55:writable] Warning: Parameter r.nextProducts[1].data.MM has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1333:3-1333:87:writable] Warning: Parameter r.nextProducts[1].data.Hf has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1334:3-1334:81:writable] Warning: Parameter r.nextProducts[1].data.H0 has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter r.nextProducts[1].data.alow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter r.nextProducts[1].data.blow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter r.nextProducts[1].data.ahigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter r.nextProducts[1].data.bhigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1341:3-1342:83:writable] Warning: Parameter r.nextProducts[1].data.z has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1344:3-1344:89:writable] Warning: Parameter r.nextProducts[1].data.phase has no value, and is fixed during initialization (fixed=true), using available start value (start=Chemical.Interfaces.Phase.Gas) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1347:3-1347:140:writable] Warning: Parameter r.nextProducts[1].data.VmBase has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1348:3-1348:137:writable] Warning: Parameter r.nextProducts[1].data.VmExcess has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1332:3-1332:55:writable] Warning: Parameter r1.nextProducts[1].data.MM has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1333:3-1333:87:writable] Warning: Parameter r1.nextProducts[1].data.Hf has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1334:3-1334:81:writable] Warning: Parameter r1.nextProducts[1].data.H0 has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter r1.nextProducts[1].data.alow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter r1.nextProducts[1].data.blow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter r1.nextProducts[1].data.ahigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter r1.nextProducts[1].data.bhigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1341:3-1342:83:writable] Warning: Parameter r1.nextProducts[1].data.z has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1344:3-1344:89:writable] Warning: Parameter r1.nextProducts[1].data.phase has no value, and is fixed during initialization (fixed=true), using available start value (start=Chemical.Interfaces.Phase.Gas) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1347:3-1347:140:writable] Warning: Parameter r1.nextProducts[1].data.VmBase has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1348:3-1348:137:writable] Warning: Parameter r1.nextProducts[1].data.VmExcess has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
Notification: Performance of NFFlatten.flatten: time 0.009057/0.2466, allocations: 5.037 MB / 419.6 MB, free: 34.6 MB / 330.7 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.002938/0.2495, allocations: 1.331 MB / 420.9 MB, free: 34.27 MB / 330.7 MB
Notification: Performance of NFEvalConstants.evaluate: time 0.008303/0.2578, allocations: 3.143 MB / 424 MB, free: 34.06 MB / 330.7 MB
Notification: Performance of NFSimplifyModel.simplify: time 0.00515/0.263, allocations: 2.42 MB / 426.5 MB, free: 33.41 MB / 330.7 MB
Notification: Performance of NFPackage.collectConstants: time 0.001683/0.2647, allocations: 0.5292 MB / 427 MB, free: 33.41 MB / 330.7 MB
Notification: Performance of NFFlatten.collectFunctions: time 0.00649/0.2712, allocations: 2.311 MB / 429.3 MB, free: 33.11 MB / 330.7 MB
Notification: Performance of NFScalarize.scalarize: time 0.002395/0.2736, allocations: 1.71 MB / 431 MB, free: 32.2 MB / 330.7 MB
Notification: Performance of NFVerifyModel.verify: time 0.004061/0.2776, allocations: 1.791 MB / 432.8 MB, free: 31.44 MB / 330.7 MB
Notification: Performance of NFConvertDAE.convert: time 0.01127/0.2889, allocations: 6.626 MB / 439.4 MB, free: 28.04 MB / 330.7 MB
Notification: Performance of FrontEnd - DAE generated: time 5.891e-06/0.2889, allocations: 0 / 439.4 MB, free: 28.04 MB / 330.7 MB
Notification: Performance of FrontEnd: time 2.534e-06/0.2889, allocations: 3.5 kB / 439.4 MB, free: 28.04 MB / 330.7 MB
Notification: Performance of Transformations before backend: time 0.0003209/0.2892, allocations: 0 / 439.4 MB, free: 28.04 MB / 330.7 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 1431
 * Number of variables: 1431
Notification: Performance of Generate backend data structure: time 0.009505/0.2987, allocations: 6.644 MB / 446.1 MB, free: 21.84 MB / 330.7 MB
Notification: Performance of prepare preOptimizeDAE: time 4.579e-05/0.2988, allocations: 8.031 kB / 446.1 MB, free: 21.83 MB / 330.7 MB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.003222/0.302, allocations: 2.283 MB / 448.4 MB, free: 19.57 MB / 330.7 MB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.002981/0.305, allocations: 2.592 MB / 451 MB, free: 17.09 MB / 330.7 MB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.0002846/0.3053, allocations: 0.7349 MB / 451.7 MB, free: 16.28 MB / 330.7 MB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.000415/0.3057, allocations: 459.1 kB / 452.1 MB, free: 15.84 MB / 330.7 MB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.007414/0.3131, allocations: 5.808 MB / 457.9 MB, free: 10.01 MB / 330.7 MB
Notification: Performance of preOpt findStateOrder (simulation): time 5.441e-05/0.3131, allocations: 192 / 457.9 MB, free: 10.01 MB / 330.7 MB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.0002334/0.3134, allocations: 186.5 kB / 458.1 MB, free: 9.836 MB / 330.7 MB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 0.0002962/0.3137, allocations: 0.5501 MB / 458.7 MB, free: 9.289 MB / 330.7 MB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.007105/0.3208, allocations: 6.358 MB / 465 MB, free: 2.926 MB / 330.7 MB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.03052/0.3513, allocations: 22.74 MB / 487.8 MB, free: 12.61 MB / 362.7 MB
Notification: Performance of preOpt comSubExp (simulation): time 0.003376/0.3547, allocations: 1.974 MB / 489.8 MB, free: 10.64 MB / 362.7 MB
Notification: Performance of preOpt resolveLoops (simulation): time 0.002288/0.357, allocations: 1.418 MB / 491.2 MB, free: 9.219 MB / 362.7 MB
Notification: Performance of preOpt evalFunc (simulation): time 0.01963/0.3766, allocations: 14.29 MB / 0.4936 GB, free: 11 MB / 378.7 MB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 4.972e-05/0.3766, allocations: 55.39 kB / 0.4937 GB, free: 10.94 MB / 378.7 MB
Notification: Performance of pre-optimization done (n=289): time 5.29e-06/0.3766, allocations: 0 / 0.4937 GB, free: 10.94 MB / 378.7 MB
Error: Internal error IndexReduction.pantelidesIndexReduction failed! System is structurally singular and cannot be handled because the number of unassigned equations is larger than the number of states. Use -d=bltdump to get more information.
Error: Internal error Transformation Module PFPlusExt index Reduction Method Pantelides failed!
"
[Timeout remaining time 660]
[Calling sys.exit(0), Time elapsed: 2.27188637573272]