Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_Chemical.Obsolete.Examples.ExothermicReaction.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001372/0.001372, allocations: 93.06 kB / 19.65 MB, free: 276 kB / 13.93 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001401/0.001401, allocations: 165 kB / 23.02 MB, free: 1.551 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.053/1.053, allocations: 177.1 MB / 203.4 MB, free: 5.625 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo): time 0.0979/0.0979, allocations: 17.38 MB / 277.3 MB, free: 11.64 MB / 266.7 MB
"
[Timeout remaining time 180]
Using package Chemical with version 2.0.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Chemical.Obsolete.Examples.ExothermicReaction,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_Chemical.Obsolete.Examples.ExothermicReaction")
translateModel(Chemical.Obsolete.Examples.ExothermicReaction,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_Chemical.Obsolete.Examples.ExothermicReaction") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.452e-06/1.452e-06, allocations: 0 / 353.4 MB, free: 10.01 MB / 282.7 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 2.478e-05/2.623e-05, allocations: 2.312 kB / 353.4 MB, free: 10.01 MB / 282.7 MB
Notification: Performance of NFInst.instantiate(Chemical.Obsolete.Examples.ExothermicReaction): time 0.0155/0.01552, allocations: 8.563 MB / 362 MB, free: 1.406 MB / 282.7 MB
Notification: Performance of NFInst.instExpressions: time 0.02745/0.04297, allocations: 23.52 MB / 385.5 MB, free: 9.793 MB / 314.7 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.00128/0.04425, allocations: 31.75 kB / 385.5 MB, free: 9.762 MB / 314.7 MB
Notification: Performance of NFTyping.typeComponents: time 0.001232/0.04548, allocations: 484 kB / 386 MB, free: 9.285 MB / 314.7 MB
Notification: Performance of NFTyping.typeBindings: time 0.005378/0.05086, allocations: 2.113 MB / 388.1 MB, free: 7.156 MB / 314.7 MB
Notification: Performance of NFTyping.typeClassSections: time 0.006913/0.05778, allocations: 3.149 MB / 391.3 MB, free: 3.988 MB / 314.7 MB
Notification: Performance of NFFlatten.flatten: time 0.003157/0.06093, allocations: 2.584 MB / 393.9 MB, free: 1.391 MB / 314.7 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.001566/0.0625, allocations: 1.194 MB / 395 MB, free: 156 kB / 314.7 MB
Notification: Performance of NFEvalConstants.evaluate: time 0.002517/0.06502, allocations: 1.72 MB / 396.8 MB, free: 14.43 MB / 330.7 MB
Notification: Performance of NFSimplifyModel.simplify: time 0.001648/0.06666, allocations: 1.138 MB / 397.9 MB, free: 13.29 MB / 330.7 MB
Notification: Performance of NFPackage.collectConstants: time 0.0004876/0.06715, allocations: 216 kB / 398.1 MB, free: 13.08 MB / 330.7 MB
Notification: Performance of NFFlatten.collectFunctions: time 0.006239/0.07339, allocations: 2.491 MB / 400.6 MB, free: 10.58 MB / 330.7 MB
Notification: Performance of NFScalarize.scalarize: time 0.0006623/0.07405, allocations: 0.5217 MB / 401.1 MB, free: 10.06 MB / 330.7 MB
Notification: Performance of NFVerifyModel.verify: time 0.001199/0.07525, allocations: 0.8029 MB / 401.9 MB, free: 9.254 MB / 330.7 MB
Notification: Performance of NFConvertDAE.convert: time 0.009918/0.08517, allocations: 4.7 MB / 406.6 MB, free: 4.535 MB / 330.7 MB
Notification: Performance of FrontEnd - DAE generated: time 6.282e-06/0.08518, allocations: 4 kB / 406.6 MB, free: 4.531 MB / 330.7 MB
Notification: Performance of FrontEnd: time 1.563e-06/0.08518, allocations: 0 / 406.6 MB, free: 4.531 MB / 330.7 MB
Notification: Performance of Transformations before backend: time 2.607e-05/0.08521, allocations: 0 / 406.6 MB, free: 4.531 MB / 330.7 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 455
 * Number of variables: 455
Notification: Performance of Generate backend data structure: time 0.003435/0.08864, allocations: 2.756 MB / 409.4 MB, free: 1.723 MB / 330.7 MB
Notification: Performance of prepare preOptimizeDAE: time 3.99e-05/0.08868, allocations: 8.031 kB / 409.4 MB, free: 1.715 MB / 330.7 MB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0013/0.08998, allocations: 0.6886 MB / 410.1 MB, free: 1.023 MB / 330.7 MB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.001158/0.09114, allocations: 0.9158 MB / 411 MB, free: 76 kB / 330.7 MB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.1268/0.2179, allocations: 240.6 kB / 411.2 MB, free: 62.35 MB / 330.7 MB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.0004333/0.2184, allocations: 184 kB / 411.4 MB, free: 62.35 MB / 330.7 MB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.002789/0.2212, allocations: 1.677 MB / 413.1 MB, free: 62.17 MB / 330.7 MB
Notification: Performance of preOpt findStateOrder (simulation): time 3.2e-05/0.2212, allocations: 1.875 kB / 413.1 MB, free: 62.17 MB / 330.7 MB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.0001409/0.2213, allocations: 77.77 kB / 413.2 MB, free: 62.17 MB / 330.7 MB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 4.258e-05/0.2214, allocations: 43.25 kB / 413.2 MB, free: 62.17 MB / 330.7 MB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.002983/0.2244, allocations: 1.728 MB / 414.9 MB, free: 62.15 MB / 330.7 MB
Warning: The model contains alias variables with redundant start and/or conflicting nominal values. It is recommended to resolve the conflicts, because otherwise the system could be hard to solve. To print the conflicting alias sets and the chosen candidates please use -d=aliasConflicts.
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.007586/0.232, allocations: 5.085 MB / 420 MB, free: 59.91 MB / 330.7 MB
Notification: Performance of preOpt comSubExp (simulation): time 0.00356/0.2355, allocations: 2.121 MB / 422.2 MB, free: 59.41 MB / 330.7 MB
Notification: Performance of preOpt resolveLoops (simulation): time 0.000723/0.2362, allocations: 0.5273 MB / 422.7 MB, free: 59.29 MB / 330.7 MB
Notification: Performance of preOpt evalFunc (simulation): time 0.005946/0.2422, allocations: 4.199 MB / 426.9 MB, free: 57.33 MB / 330.7 MB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 2.846e-05/0.2422, allocations: 53.83 kB / 426.9 MB, free: 57.27 MB / 330.7 MB
Notification: Performance of pre-optimization done (n=122): time 3.046e-06/0.2422, allocations: 0 / 426.9 MB, free: 57.27 MB / 330.7 MB
Notification: Performance of matching and sorting (n=150): time 0.01484/0.2571, allocations: 5.155 MB / 432.1 MB, free: 52.21 MB / 330.7 MB
Notification: Performance of inlineWhenForInitialization (initialization): time 3.132e-05/0.2571, allocations: 94.42 kB / 432.2 MB, free: 52.11 MB / 330.7 MB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.000679/0.2578, allocations: 0.8787 MB / 433.1 MB, free: 51.23 MB / 330.7 MB
Notification: Performance of collectPreVariables (initialization): time 6.194e-05/0.2578, allocations: 49.7 kB / 433.1 MB, free: 51.18 MB / 330.7 MB
Notification: Performance of collectInitialEqns (initialization): time 0.0003148/0.2581, allocations: 0.9172 MB / 434 MB, free: 50.36 MB / 330.7 MB
Notification: Performance of collectInitialBindings (initialization): time 0.0002524/0.2584, allocations: 0.541 MB / 434.6 MB, free: 49.89 MB / 330.7 MB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.0003412/0.2587, allocations: 369.1 kB / 434.9 MB, free: 49.52 MB / 330.7 MB
Notification: Performance of setup shared object (initialization): time 8.502e-05/0.2588, allocations: 0.5355 MB / 435.5 MB, free: 48.98 MB / 330.7 MB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.0005489/0.2594, allocations: 347.8 kB / 435.8 MB, free: 48.64 MB / 330.7 MB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.0007959/0.2602, allocations: 1.355 MB / 437.2 MB, free: 46.82 MB / 330.7 MB
Warning: It was not possible to determine if the initialization problem is consistent, because of not evaluable parameters/start values during compile time: solution_at_constant_temperature.temperature = solution_at_constant_temperature.temperature_start (fixedTemperature.T = solution_at_constant_temperature.temperature_start)
Notification: Performance of analyzeInitialSystem (initialization): time 0.001531/0.2617, allocations: 1.9 MB / 439.1 MB, free: 44.48 MB / 330.7 MB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 8.035e-06/0.2617, allocations: 7.172 kB / 439.1 MB, free: 44.48 MB / 330.7 MB
Notification: Performance of matching and sorting (n=258) (initialization): time 0.003544/0.2652, allocations: 2.213 MB / 441.3 MB, free: 42.24 MB / 330.7 MB
Notification: Performance of prepare postOptimizeDAE: time 2.171e-05/0.2653, allocations: 16 kB / 441.3 MB, free: 42.23 MB / 330.7 MB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 2.109e-05/0.2653, allocations: 27.89 kB / 441.3 MB, free: 42.2 MB / 330.7 MB
Notification: Performance of postOpt tearingSystem (initialization): time 0.003916/0.2692, allocations: 1.102 MB / 442.4 MB, free: 41.09 MB / 330.7 MB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0009441/0.2701, allocations: 0.5265 MB / 442.9 MB, free: 40.56 MB / 330.7 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 0.005666/0.2758, allocations: 9.098 MB / 452 MB, free: 31 MB / 330.7 MB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0008823/0.2767, allocations: 79.88 kB / 452.1 MB, free: 30.92 MB / 330.7 MB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.0001162/0.2768, allocations: 112 kB / 452.2 MB, free: 30.81 MB / 330.7 MB
Warning: The initial conditions are over specified. The following 1 initial equations are redundant, so they are removed from the initialization system:
         solution_at_constant_temperature.temperature = solution_at_constant_temperature.temperature_start.
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 107
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (241):
 * Single equations (assignments): 237
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 4
 * Mixed (continuous/discrete) equation systems: 0
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 2 systems
   {(3,6,77.8%), (1,3,100.0%)}
 * Non-linear torn systems (#iteration vars, #inner vars): 2 systems
   {(1,3), (1,3)}
Notification: Performance of prepare postOptimizeDAE: time 0.0004085/0.2772, allocations: 306.7 kB / 452.5 MB, free: 30.52 MB / 330.7 MB
Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0002209/0.2774, allocations: 179.2 kB / 452.7 MB, free: 30.34 MB / 330.7 MB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.00391/0.2814, allocations: 2.157 MB / 454.9 MB, free: 28.12 MB / 330.7 MB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 8.046e-06/0.2814, allocations: 16 kB / 454.9 MB, free: 28.1 MB / 330.7 MB
Notification: Performance of postOpt constantLinearSystem (simulation): time 6.633e-06/0.2814, allocations: 4 kB / 454.9 MB, free: 28.1 MB / 330.7 MB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 9.818e-06/0.2814, allocations: 11.97 kB / 454.9 MB, free: 28.09 MB / 330.7 MB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.002665/0.284, allocations: 1.958 MB / 456.9 MB, free: 26.08 MB / 330.7 MB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 6.332e-06/0.284, allocations: 320 / 456.9 MB, free: 26.08 MB / 330.7 MB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.000704/0.2848, allocations: 315.6 kB / 457.2 MB, free: 25.77 MB / 330.7 MB
Notification: Performance of postOpt tearingSystem (simulation): time 0.00466/0.2894, allocations: 1.21 MB / 458.4 MB, free: 24.54 MB / 330.7 MB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 9.168e-05/0.2895, allocations: 43.97 kB / 458.4 MB, free: 24.5 MB / 330.7 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 0.005446/0.295, allocations: 10.72 MB / 469.1 MB, free: 13.19 MB / 330.7 MB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 3.928e-06/0.295, allocations: 7.938 kB / 469.1 MB, free: 13.18 MB / 330.7 MB
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.004344/0.2993, allocations: 2.309 MB / 471.4 MB, free: 10.79 MB / 330.7 MB
Notification: Performance of postOpt removeConstants (simulation): time 0.0003359/0.2996, allocations: 123.1 kB / 471.6 MB, free: 10.67 MB / 330.7 MB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0001246/0.2998, allocations: 31.94 kB / 471.6 MB, free: 10.64 MB / 330.7 MB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0003868/0.3001, allocations: 32 kB / 471.6 MB, free: 10.61 MB / 330.7 MB
Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0002285/0.3004, allocations: 133 kB / 471.8 MB, free: 10.48 MB / 330.7 MB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 5.936e-05/0.3004, allocations: 51.98 kB / 471.8 MB, free: 10.43 MB / 330.7 MB
Notification: Performance of sorting global known variables: time 0.0004427/0.3009, allocations: 0.5135 MB / 472.3 MB, free: 9.906 MB / 330.7 MB
Notification: Performance of sort global known variables: time 8e-08/0.3009, allocations: 0 / 472.3 MB, free: 9.906 MB / 330.7 MB
Notification: Performance of remove unused functions: time 0.002387/0.3033, allocations: 1.071 MB / 473.4 MB, free: 8.871 MB / 330.7 MB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 12
 * Number of states: 7 (A1.logn,B1.logn,H2O.logn,A.logn,B.logn,H2O1.amountOfBonds,H2O1.logn)
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (137):
 * Single equations (assignments): 132
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 5
 * Mixed (continuous/discrete) equation systems: 0
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 2 systems
   {(1,3,100.0%), (2,7,100.0%)}
 * Non-linear torn systems (#iteration vars, #inner vars): 3 systems
   {(1,3), (1,1), (2,3)}
Notification: Performance of Backend phase and start with SimCode phase: time 0.001435/0.3047, allocations: 1.165 MB / 474.6 MB, free: 7.836 MB / 330.7 MB
Notification: Performance of simCode: created initialization part: time 0.002014/0.3067, allocations: 1.953 MB / 476.5 MB, free: 5.812 MB / 330.7 MB
Notification: Performance of simCode: created event and clocks part: time 2.675e-06/0.3067, allocations: 0 / 476.5 MB, free: 5.812 MB / 330.7 MB
Notification: Performance of simCode: created simulation system equations: time 0.001006/0.3077, allocations: 1.479 MB / 478 MB, free: 4.242 MB / 330.7 MB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0009174/0.3086, allocations: 347.5 kB / 478.3 MB, free: 3.91 MB / 330.7 MB
Error: Error parsing unit kDa: Unit not found
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.003601/0.3122, allocations: 2.804 MB / 481.1 MB, free: 1.012 MB / 330.7 MB
Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0002001/0.3124, allocations: 296.3 kB / 481.4 MB, free: 0.6953 MB / 330.7 MB
Notification: Performance of simCode: alias equations: time 0.0007403/0.3132, allocations: 318.9 kB / 481.7 MB, free: 388 kB / 330.7 MB
Notification: Performance of simCode: all other stuff during SimCode phase: time 0.00028/0.3135, allocations: 192.4 kB / 481.9 MB, free: 196 kB / 330.7 MB
Notification: Performance of SimCode: time 1.644e-06/0.3135, allocations: 0 / 481.9 MB, free: 196 kB / 330.7 MB
Notification: Performance of Templates: time 0.042/0.3555, allocations: 38.3 MB / 0.508 GB, free: 10.2 MB / 378.7 MB
"
[Timeout remaining time 660]
make -j1 -f Chemical_Chemical.Obsolete.Examples.ExothermicReaction.makefile [Timeout 660]
(rm -f Chemical_Chemical.Obsolete.Examples.ExothermicReaction.pipe ; mkfifo Chemical_Chemical.Obsolete.Examples.ExothermicReaction.pipe ; head -c 1048576 < Chemical_Chemical.Obsolete.Examples.ExothermicReaction.pipe >> ../files/Chemical_Chemical.Obsolete.Examples.ExothermicReaction.sim & ./Chemical_Chemical.Obsolete.Examples.ExothermicReaction -abortSlowSimulation -alarm=240  -lv LOG_STATS > Chemical_Chemical.Obsolete.Examples.ExothermicReaction.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 4.35710939578712]