Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr BioChem_BioChem.Examples.GlucoseInsulinModel.GlucoseInsulinModel.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.0008718/0.0008718, allocations: 92.22 kB / 19.65 MB, free: 276 kB / 13.93 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.0008828/0.0008828, allocations: 169 kB / 23.02 MB, free: 1.547 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.018/1.018, allocations: 177.1 MB / 203.4 MB, free: 5.629 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/BioChem 1.1.3/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/BioChem 1.1.3/package.mo): time 0.05231/0.05231, allocations: 9.551 MB / 269.5 MB, free: 3.938 MB / 250.7 MB
"
[Timeout remaining time 180]
Using package BioChem with version 1.1.3 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/BioChem 1.1.3/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(BioChem.Examples.GlucoseInsulinModel.GlucoseInsulinModel,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2100,variableFilter="",fileNamePrefix="BioChem_BioChem.Examples.GlucoseInsulinModel.GlucoseInsulinModel")
translateModel(BioChem.Examples.GlucoseInsulinModel.GlucoseInsulinModel,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2100,variableFilter="",fileNamePrefix="BioChem_BioChem.Examples.GlucoseInsulinModel.GlucoseInsulinModel") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.894e-06/1.894e-06, allocations: 0 / 342 MB, free: 7.641 MB / 266.7 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 2.473e-05/2.662e-05, allocations: 2.312 kB / 342 MB, free: 7.637 MB / 266.7 MB
Notification: Performance of NFInst.instantiate(BioChem.Examples.GlucoseInsulinModel.GlucoseInsulinModel): time 0.007385/0.007411, allocations: 9.136 MB / 351.1 MB, free: 14.48 MB / 282.7 MB
Notification: Performance of NFInst.instExpressions: time 0.005683/0.01309, allocations: 3.433 MB / 354.6 MB, free: 11.02 MB / 282.7 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.001391/0.01448, allocations: 119.9 kB / 354.7 MB, free: 10.91 MB / 282.7 MB
Notification: Performance of NFTyping.typeComponents: time 0.0008652/0.01535, allocations: 373 kB / 355.1 MB, free: 10.54 MB / 282.7 MB
Notification: Performance of NFTyping.typeBindings: time 0.001336/0.01669, allocations: 0.5609 MB / 355.6 MB, free: 9.973 MB / 282.7 MB
Notification: Performance of NFTyping.typeClassSections: time 0.001024/0.01771, allocations: 0.5813 MB / 356.2 MB, free: 9.391 MB / 282.7 MB
Notification: Performance of NFFlatten.flatten: time 0.001957/0.01967, allocations: 2.413 MB / 358.6 MB, free: 6.965 MB / 282.7 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.000952/0.02062, allocations: 0.8076 MB / 359.4 MB, free: 6.105 MB / 282.7 MB
Notification: Performance of NFEvalConstants.evaluate: time 0.00156/0.02218, allocations: 1.548 MB / 361 MB, free: 4.555 MB / 282.7 MB
Notification: Performance of NFSimplifyModel.simplify: time 0.0007948/0.02297, allocations: 0.8062 MB / 361.8 MB, free: 3.746 MB / 282.7 MB
Notification: Performance of NFPackage.collectConstants: time 0.0003076/0.02328, allocations: 324 kB / 362.1 MB, free: 3.43 MB / 282.7 MB
Notification: Performance of NFFlatten.collectFunctions: time 0.0003324/0.02361, allocations: 316 kB / 362.4 MB, free: 3.121 MB / 282.7 MB
Notification: Performance of NFScalarize.scalarize: time 0.0002973/0.02391, allocations: 0.5958 MB / 363 MB, free: 2.523 MB / 282.7 MB
Notification: Performance of NFVerifyModel.verify: time 0.0007082/0.02462, allocations: 0.8693 MB / 363.9 MB, free: 1.652 MB / 282.7 MB
Notification: Performance of NFConvertDAE.convert: time 0.001558/0.02618, allocations: 1.771 MB / 365.6 MB, free: 15.88 MB / 298.7 MB
Notification: Performance of FrontEnd - DAE generated: time 6.282e-06/0.02618, allocations: 0 / 365.6 MB, free: 15.88 MB / 298.7 MB
Notification: Performance of FrontEnd: time 1.353e-06/0.02618, allocations: 4 kB / 365.6 MB, free: 15.87 MB / 298.7 MB
Notification: Performance of Transformations before backend: time 4.613e-05/0.02623, allocations: 0 / 365.6 MB, free: 15.87 MB / 298.7 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 687
 * Number of variables: 687
Notification: Performance of Generate backend data structure: time 0.002455/0.02869, allocations: 2.398 MB / 368 MB, free: 13.43 MB / 298.7 MB
Notification: Performance of prepare preOptimizeDAE: time 5.972e-05/0.02875, allocations: 8.031 kB / 368 MB, free: 13.42 MB / 298.7 MB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0006379/0.02938, allocations: 471.4 kB / 368.5 MB, free: 12.96 MB / 298.7 MB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.0008668/0.03025, allocations: 0.7274 MB / 369.2 MB, free: 12.2 MB / 298.7 MB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.0002375/0.03049, allocations: 304.8 kB / 369.5 MB, free: 11.88 MB / 298.7 MB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.0002356/0.03072, allocations: 284.3 kB / 369.8 MB, free: 11.6 MB / 298.7 MB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.002215/0.03294, allocations: 1.872 MB / 371.7 MB, free: 9.621 MB / 298.7 MB
Notification: Performance of preOpt findStateOrder (simulation): time 5.03e-05/0.03299, allocations: 7.953 kB / 371.7 MB, free: 9.613 MB / 298.7 MB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.0001144/0.0331, allocations: 112 kB / 371.8 MB, free: 9.504 MB / 298.7 MB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 3.685e-05/0.03314, allocations: 64 kB / 371.9 MB, free: 9.441 MB / 298.7 MB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.001402/0.03454, allocations: 0.9119 MB / 372.8 MB, free: 8.512 MB / 298.7 MB
Warning: The model contains alias variables with redundant start and/or conflicting nominal values. It is recommended to resolve the conflicts, because otherwise the system could be hard to solve. To print the conflicting alias sets and the chosen candidates please use -d=aliasConflicts.
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.006978/0.04152, allocations: 7.753 MB / 380.5 MB, free: 452 kB / 298.7 MB
Notification: Performance of preOpt comSubExp (simulation): time 0.001134/0.04265, allocations: 1.011 MB / 381.5 MB, free: 15.37 MB / 314.7 MB
Notification: Performance of preOpt resolveLoops (simulation): time 0.0003886/0.04304, allocations: 341.2 kB / 381.9 MB, free: 15.02 MB / 314.7 MB
Notification: Performance of preOpt evalFunc (simulation): time 5.704e-05/0.0431, allocations: 21.31 kB / 381.9 MB, free: 15 MB / 314.7 MB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 3.308e-05/0.04313, allocations: 58.69 kB / 381.9 MB, free: 14.93 MB / 314.7 MB
Notification: Performance of pre-optimization done (n=139): time 3.487e-06/0.04314, allocations: 0 / 381.9 MB, free: 14.93 MB / 314.7 MB
Notification: Performance of matching and sorting (n=171): time 0.006422/0.04956, allocations: 5.395 MB / 387.3 MB, free: 9.535 MB / 314.7 MB
Notification: Performance of inlineWhenForInitialization (initialization): time 7.285e-05/0.04963, allocations: 179.4 kB / 387.5 MB, free: 9.324 MB / 314.7 MB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0003876/0.05002, allocations: 0.5332 MB / 388.1 MB, free: 8.773 MB / 314.7 MB
Notification: Performance of collectPreVariables (initialization): time 5.523e-05/0.05007, allocations: 53.7 kB / 388.1 MB, free: 8.715 MB / 314.7 MB
Notification: Performance of collectInitialEqns (initialization): time 0.0003929/0.05047, allocations: 1.025 MB / 389.1 MB, free: 7.676 MB / 314.7 MB
Notification: Performance of collectInitialBindings (initialization): time 0.0003354/0.0508, allocations: 0.6484 MB / 389.8 MB, free: 7.023 MB / 314.7 MB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.0003241/0.05113, allocations: 358.1 kB / 390.1 MB, free: 6.668 MB / 314.7 MB
Notification: Performance of setup shared object (initialization): time 0.0001118/0.05124, allocations: 0.4887 MB / 390.6 MB, free: 6.172 MB / 314.7 MB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.0005459/0.05178, allocations: 428.7 kB / 391 MB, free: 5.746 MB / 314.7 MB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.0008366/0.05262, allocations: 1.164 MB / 392.2 MB, free: 4.211 MB / 314.7 MB
Notification: Performance of analyzeInitialSystem (initialization): time 0.001905/0.05452, allocations: 2.047 MB / 394.2 MB, free: 1.805 MB / 314.7 MB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 7.554e-06/0.05453, allocations: 4 kB / 394.2 MB, free: 1.801 MB / 314.7 MB
Notification: Performance of matching and sorting (n=291) (initialization): time 0.001761/0.05629, allocations: 1.649 MB / 395.9 MB, free: 148 kB / 314.7 MB
Notification: Performance of prepare postOptimizeDAE: time 2.438e-05/0.05632, allocations: 16 kB / 395.9 MB, free: 132 kB / 314.7 MB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 1.722e-05/0.05634, allocations: 20 kB / 395.9 MB, free: 112 kB / 314.7 MB
Notification: Performance of postOpt tearingSystem (initialization): time 3.1e-05/0.05637, allocations: 28 kB / 396 MB, free: 84 kB / 314.7 MB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.001323/0.05769, allocations: 0.6401 MB / 396.6 MB, free: 15.44 MB / 330.7 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 2.87e-05/0.05772, allocations: 43.86 kB / 396.6 MB, free: 15.4 MB / 330.7 MB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0004286/0.05815, allocations: 84.06 kB / 396.7 MB, free: 15.32 MB / 330.7 MB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 8.279e-05/0.05823, allocations: 88 kB / 396.8 MB, free: 15.23 MB / 330.7 MB
Warning: Assuming fixed start value for the following 41 variables:
         V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer )  \"Compartment volume\" type: Real
         adiposeTissue1.V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer )  \"Compartment volume\" type: Real
         GlucoseRenalExcretion.V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer )  \"Compartment volume\" type: Real
         GlucoseRenalExcretion.E.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer )  \"Number of moles of substance in pool (mol)\" type: Real
         UtilizationMuscleTissue.V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer )  \"Compartment volume\" type: Real
         UtilizationMuscleTissue.U_idm.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer )  \"Number of moles of substance in pool (mol)\" type: Real
         GastroIntestinalTract.V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer )  \"Compartment volume\" type: Real
         GastroIntestinalTract.GlucoseIntake.c:VARIABLE(min = 0.0 start = 78000.0 unit = \"mol/l\" fixed = true stateSelect=StateSelect.prefer )  \"Current concentration of substance (mM)\" type: Real
         TissueGlucose.V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer )  \"Compartment volume\" type: Real
         PlasmaGlucose.V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer )  \"Compartment volume\" type: Real
         PlasmaInsulin.V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer )  \"Compartment volume\" type: Real
         LiverInsulin.V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer )  \"Compartment volume\" type: Real
         EndogenousGlucoseProduction.V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer )  \"Compartment volume\" type: Real
         EndogenousGlucoseProduction.I_po.c:VARIABLE(min = 0.0 start = 3.6 unit = \"mol/l\" fixed = true stateSelect=StateSelect.prefer )  \"Current concentration of substance (mM)\" type: Real
         BetaCell.V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer )  \"Compartment volume\" type: Real
         BetaCell.Y.c:VARIABLE(min = -1e60 start = 0.0 unit = \"mol/l\" fixed = true stateSelect=StateSelect.prefer )  \"Current concentration of substance (mM)\" type: Real
         adiposeTissue1.adipocyte1.V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer )  \"Compartment volume\" type: Real
         adiposeTissue1.adipocyte1.IR.c:VARIABLE(min = 0.0 start = 2.34e12 unit = \"mol/l\" fixed = true stateSelect=StateSelect.prefer )  \"Current concentration of substance (mM)\" type: Real
         adiposeTissue1.adipocyte1.IRS1.c:VARIABLE(min = 0.0 start = 1.61e10 unit = \"mol/l\" fixed = true stateSelect=StateSelect.prefer )  \"Current concentration of substance (mM)\" type: Real
         adiposeTissue1.adipocyte1.PKB.c:VARIABLE(min = 0.0 start = 1.68e7 unit = \"mol/l\" fixed = true stateSelect=StateSelect.prefer )  \"Current concentration of substance (mM)\" type: Real
         adiposeTissue1.adipocyte1.GLUT4_CYTOSOL.c:VARIABLE(min = 0.0 start = 5.8e8 unit = \"mol/l\" fixed = true stateSelect=StateSelect.prefer )  \"Current concentration of substance (mM)\" type: Real
         adiposeTissue1.adipocyte1.IR_insulin.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer )  \"Number of moles of substance in pool (mol)\" type: Real
         adiposeTissue1.adipocyte1.GLUT4_MEMBRANE.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer )  \"Number of moles of substance in pool (mol)\" type: Real
         adiposeTissue1.adipocyte1.GlucoseUtilization.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer )  \"Number of moles of substance in pool (mol)\" type: Real
         adiposeTissue1.adipocyte1.PKB_P.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer )  \"Number of moles of substance in pool (mol)\" type: Real
         adiposeTissue1.adipocyte1.IRS1_P.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer )  \"Number of moles of substance in pool (mol)\" type: Real
         BetaCell.G_p.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer )  \"Number of moles of substance in pool (mol)\" type: Real
         EndogenousGlucoseProduction.End.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer )  \"Number of moles of substance in pool (mol)\" type: Real
         EndogenousGlucoseProduction.I_d.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer )  \"Number of moles of substance in pool (mol)\" type: Real
         EndogenousGlucoseProduction.I_1.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer )  \"Number of moles of substance in pool (mol)\" type: Real
         LiverInsulin.Deg.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer )  \"Number of moles of substance in pool (mol)\" type: Real
         LiverInsulin.I_l.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer )  \"Number of moles of substance in pool (mol)\" type: Real
         UtilizationMuscleTissue.UtilizationReaction.X:VARIABLE(fixed = true )  \"Insulin action on glucose utilization, signed deviation from basal\" type: Real
         PlasmaInsulin.Deg.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer )  \"Number of moles of substance in pool (mol)\" type: Real
         PlasmaInsulin.I_p.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer )  \"Number of moles of substance in pool (mol)\" type: Real
         PlasmaGlucose.U_ii.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer )  \"Number of moles of substance in pool (mol)\" type: Real
         TissueGlucose.G_t.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer )  \"Number of moles of substance in pool (mol)\" type: Real
         GastroIntestinalTract.End.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer )  \"Number of moles of substance in pool (mol)\" type: Real
         GastroIntestinalTract.Q_sto1.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer )  \"Number of moles of substance in pool (mol)\" type: Real
         GastroIntestinalTract.Q_gut.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer )  \"Number of moles of substance in pool (mol)\" type: Real
         GastroIntestinalTract.Q_sto2.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer )  \"Number of moles of substance in pool (mol)\" type: Real
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 86
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (291):
 * Single equations (assignments): 291
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of prepare postOptimizeDAE: time 0.0005573/0.05879, allocations: 461.3 kB / 397.3 MB, free: 14.8 MB / 330.7 MB
Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0001928/0.05898, allocations: 147.4 kB / 397.4 MB, free: 14.65 MB / 330.7 MB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.001204/0.06018, allocations: 1.061 MB / 398.5 MB, free: 13.58 MB / 330.7 MB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 1.184e-05/0.0602, allocations: 20 kB / 398.5 MB, free: 13.56 MB / 330.7 MB
Notification: Performance of postOpt constantLinearSystem (simulation): time 8.436e-06/0.0602, allocations: 3.938 kB / 398.5 MB, free: 13.56 MB / 330.7 MB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 1.118e-05/0.06022, allocations: 7.969 kB / 398.5 MB, free: 13.55 MB / 330.7 MB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.003348/0.06356, allocations: 2.583 MB / 401.1 MB, free: 10.91 MB / 330.7 MB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 4.379e-06/0.06357, allocations: 0 / 401.1 MB, free: 10.91 MB / 330.7 MB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.001207/0.06478, allocations: 475.4 kB / 401.5 MB, free: 10.45 MB / 330.7 MB
Notification: Performance of postOpt tearingSystem (simulation): time 9.107e-06/0.06478, allocations: 8 kB / 401.6 MB, free: 10.44 MB / 330.7 MB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 9.387e-05/0.06488, allocations: 59.95 kB / 401.6 MB, free: 10.38 MB / 330.7 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 6.242e-06/0.06488, allocations: 8 kB / 401.6 MB, free: 10.37 MB / 330.7 MB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 4.488e-06/0.06489, allocations: 15.98 kB / 401.6 MB, free: 10.36 MB / 330.7 MB
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.00193/0.06682, allocations: 2.13 MB / 403.8 MB, free: 8.195 MB / 330.7 MB
Notification: Performance of postOpt removeConstants (simulation): time 0.0001038/0.06692, allocations: 83.34 kB / 403.8 MB, free: 8.113 MB / 330.7 MB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0001027/0.06703, allocations: 47.98 kB / 403.9 MB, free: 8.066 MB / 330.7 MB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0003616/0.06739, allocations: 36 kB / 403.9 MB, free: 8.031 MB / 330.7 MB
Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0001403/0.06753, allocations: 121 kB / 404 MB, free: 7.91 MB / 330.7 MB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 5.655e-05/0.06758, allocations: 55.95 kB / 404.1 MB, free: 7.855 MB / 330.7 MB
Notification: Performance of sorting global known variables: time 0.0002029/0.06779, allocations: 290.8 kB / 404.4 MB, free: 7.57 MB / 330.7 MB
Notification: Performance of sort global known variables: time 5e-08/0.06779, allocations: 0 / 404.4 MB, free: 7.57 MB / 330.7 MB
Notification: Performance of remove unused functions: time 0.001042/0.06883, allocations: 428 kB / 404.8 MB, free: 7.152 MB / 330.7 MB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 7
 * Number of states: 41 (GastroIntestinalTract.V,GastroIntestinalTract.Q_sto2.n,GastroIntestinalTract.Q_gut.n,GastroIntestinalTract.Q_sto1.n,GastroIntestinalTract.GlucoseIntake.c,GastroIntestinalTract.End.n,TissueGlucose.V,TissueGlucose.G_t.n,PlasmaGlucose.V,PlasmaGlucose.U_ii.n,PlasmaInsulin.V,PlasmaInsulin.I_p.n,PlasmaInsulin.Deg.n,UtilizationMuscleTissue.UtilizationReaction.X,LiverInsulin.V,LiverInsulin.I_l.n,LiverInsulin.Deg.n,EndogenousGlucoseProduction.V,EndogenousGlucoseProduction.I_1.n,EndogenousGlucoseProduction.I_d.n,EndogenousGlucoseProduction.End.n,EndogenousGlucoseProduction.I_po.c,BetaCell.V,BetaCell.G_p.n,BetaCell.Y.c,adiposeTissue1.adipocyte1.V,adiposeTissue1.adipocyte1.IR.c,adiposeTissue1.adipocyte1.IRS1.c,adiposeTissue1.adipocyte1.IRS1_P.n,adiposeTissue1.adipocyte1.PKB.c,adiposeTissue1.adipocyte1.PKB_P.n,adiposeTissue1.adipocyte1.GlucoseUtilization.n,adiposeTissue1.adipocyte1.GLUT4_MEMBRANE.n,adiposeTissue1.adipocyte1.GLUT4_CYTOSOL.c,adiposeTissue1.adipocyte1.IR_insulin.n,V,adiposeTissue1.V,UtilizationMuscleTissue.V,UtilizationMuscleTissue.U_idm.n,GlucoseRenalExcretion.V,GlucoseRenalExcretion.E.n)
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (173):
 * Single equations (assignments): 173
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of Backend phase and start with SimCode phase: time 0.0001855/0.06901, allocations: 168.1 kB / 405 MB, free: 6.984 MB / 330.7 MB
Notification: Performance of simCode: created initialization part: time 0.001467/0.07048, allocations: 1.153 MB / 406.1 MB, free: 5.828 MB / 330.7 MB
Notification: Performance of simCode: created event and clocks part: time 2.795e-06/0.07048, allocations: 0 / 406.1 MB, free: 5.828 MB / 330.7 MB
Notification: Performance of simCode: created simulation system equations: time 0.0005916/0.07108, allocations: 0.5473 MB / 406.7 MB, free: 5.281 MB / 330.7 MB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0007808/0.07186, allocations: 232.1 kB / 406.9 MB, free: 5.059 MB / 330.7 MB
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.004724/0.07658, allocations: 4.131 MB / 411 MB, free: 0.8516 MB / 330.7 MB
Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0002784/0.07686, allocations: 333.8 kB / 411.4 MB, free: 0.4922 MB / 330.7 MB
Notification: Performance of simCode: alias equations: time 0.0004891/0.07735, allocations: 161.5 kB / 411.5 MB, free: 340 kB / 330.7 MB
Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0002805/0.07763, allocations: 112.4 kB / 411.6 MB, free: 224 kB / 330.7 MB
Notification: Performance of SimCode: time 1.764e-06/0.07763, allocations: 0 / 411.6 MB, free: 224 kB / 330.7 MB
Notification: Performance of Templates: time 0.1364/0.214, allocations: 15.78 MB / 427.4 MB, free: 67.62 MB / 330.7 MB
"
[Timeout remaining time 660]
make -j1 -f BioChem_BioChem.Examples.GlucoseInsulinModel.GlucoseInsulinModel.makefile [Timeout 660]
(rm -f BioChem_BioChem.Examples.GlucoseInsulinModel.GlucoseInsulinModel.pipe ; mkfifo BioChem_BioChem.Examples.GlucoseInsulinModel.GlucoseInsulinModel.pipe ; head -c 1048576 < BioChem_BioChem.Examples.GlucoseInsulinModel.GlucoseInsulinModel.pipe >> ../files/BioChem_BioChem.Examples.GlucoseInsulinModel.GlucoseInsulinModel.sim & ./BioChem_BioChem.Examples.GlucoseInsulinModel.GlucoseInsulinModel -abortSlowSimulation -alarm=240  -lv LOG_STATS > BioChem_BioChem.Examples.GlucoseInsulinModel.GlucoseInsulinModel.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 3.746193057857454]