Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.002592/0.002592, allocations: 93.47 kB / 19.44 MB, free: 336 kB / 13.93 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.003098/0.003098, allocations: 169.6 kB / 22.76 MB, free: 1.664 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.546/1.546, allocations: 177.1 MB / 203.1 MB, free: 5.617 MB / 186.7 MB
"
[Timeout remaining time 178]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180]
"[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory.
Missing names are:
	Paracetamol_Experiment
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 3.388/3.388, allocations: 274.5 MB / 0.5215 GB, free: 14.18 MB / 458.7 MB
"
[Timeout remaining time 176]
Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body,tolerance=1e-06,outputFormat="empty",numberOfIntervals=499,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body")
translateModel(Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body,tolerance=1e-06,outputFormat="empty",numberOfIntervals=499,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.774e-06/1.774e-06, allocations: 0 / 0.6473 GB, free: 39.05 MB / 0.5262 GB
Notification: Performance of FrontEnd - Absyn->SCode: time 3.246e-05/3.424e-05, allocations: 6.25 kB / 0.6473 GB, free: 39.05 MB / 0.5262 GB
Notification: Performance of NFInst.instantiate(Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body): time 0.01529/0.01532, allocations: 11.68 MB / 0.6587 GB, free: 31.37 MB / 0.5262 GB
Notification: Performance of NFInst.instExpressions: time 0.007419/0.02274, allocations: 2.484 MB / 0.6611 GB, free: 29.63 MB / 0.5262 GB
Notification: Performance of NFInst.updateImplicitVariability: time 0.00179/0.02453, allocations: 25.94 kB / 0.6612 GB, free: 29.62 MB / 0.5262 GB
Notification: Performance of NFTyping.typeComponents: time 0.0008618/0.02539, allocations: 296.2 kB / 0.6614 GB, free: 29.46 MB / 0.5262 GB
Notification: Performance of NFTyping.typeBindings: time 0.003311/0.0287, allocations: 0.7888 MB / 0.6622 GB, free: 28.89 MB / 0.5262 GB
Notification: Performance of NFTyping.typeClassSections: time 0.001887/0.03059, allocations: 0.5892 MB / 0.6628 GB, free: 28.54 MB / 0.5262 GB
Notification: Performance of NFFlatten.flatten: time 0.004174/0.03477, allocations: 2.872 MB / 0.6656 GB, free: 26.99 MB / 0.5262 GB
Notification: Performance of NFFlatten.resolveConnections: time 0.00436/0.03913, allocations: 3.234 MB / 0.6687 GB, free: 25.06 MB / 0.5262 GB
Notification: Performance of NFEvalConstants.evaluate: time 0.004573/0.0437, allocations: 2.555 MB / 0.6712 GB, free: 24 MB / 0.5262 GB
Notification: Performance of NFSimplifyModel.simplify: time 0.006249/0.04995, allocations: 1.981 MB / 0.6732 GB, free: 23.47 MB / 0.5262 GB
Notification: Performance of NFPackage.collectConstants: time 0.001399/0.05135, allocations: 424.1 kB / 0.6736 GB, free: 23.47 MB / 0.5262 GB
Notification: Performance of NFFlatten.collectFunctions: time 0.001299/0.05265, allocations: 428.3 kB / 0.674 GB, free: 23.47 MB / 0.5262 GB
Notification: Performance of NFScalarize.scalarize: time 0.0009264/0.05357, allocations: 0.9244 MB / 0.6749 GB, free: 22.88 MB / 0.5262 GB
Notification: Performance of NFVerifyModel.verify: time 0.002486/0.05606, allocations: 1.302 MB / 0.6762 GB, free: 22.26 MB / 0.5262 GB
Notification: Performance of NFConvertDAE.convert: time 0.006092/0.06215, allocations: 3.787 MB / 0.6799 GB, free: 20.16 MB / 0.5262 GB
Notification: Performance of FrontEnd - DAE generated: time 6.463e-06/0.06216, allocations: 1.656 kB / 0.6799 GB, free: 20.16 MB / 0.5262 GB
Notification: Performance of FrontEnd: time 1.903e-06/0.06216, allocations: 3.938 kB / 0.6799 GB, free: 20.16 MB / 0.5262 GB
Notification: Performance of Transformations before backend: time 7.603e-05/0.06223, allocations: 0 / 0.6799 GB, free: 20.16 MB / 0.5262 GB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 449
 * Number of variables: 449
Notification: Performance of Generate backend data structure: time 0.01127/0.07351, allocations: 3.017 MB / 0.6828 GB, free: 17.94 MB / 0.5262 GB
Notification: Performance of prepare preOptimizeDAE: time 8.081e-05/0.07359, allocations: 9.438 kB / 0.6828 GB, free: 17.94 MB / 0.5262 GB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.001442/0.07503, allocations: 381.1 kB / 0.6832 GB, free: 17.76 MB / 0.5262 GB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.003142/0.07817, allocations: 1.134 MB / 0.6843 GB, free: 16.86 MB / 0.5262 GB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.0001817/0.07836, allocations: 139.8 kB / 0.6844 GB, free: 16.79 MB / 0.5262 GB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.0007464/0.0791, allocations: 198.7 kB / 0.6846 GB, free: 16.73 MB / 0.5262 GB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.008569/0.08767, allocations: 3.798 MB / 0.6883 GB, free: 14.37 MB / 0.5262 GB
Notification: Performance of preOpt findStateOrder (simulation): time 9.333e-05/0.08777, allocations: 8.328 kB / 0.6883 GB, free: 14.37 MB / 0.5262 GB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.0004301/0.0882, allocations: 73.78 kB / 0.6884 GB, free: 14.31 MB / 0.5262 GB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 5.369e-05/0.08825, allocations: 43.16 kB / 0.6884 GB, free: 14.31 MB / 0.5262 GB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.008619/0.09687, allocations: 3.392 MB / 0.6918 GB, free: 11.95 MB / 0.5262 GB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.0229/0.1198, allocations: 8.25 MB / 0.6998 GB, free: 3.629 MB / 0.5262 GB
Notification: Performance of preOpt comSubExp (simulation): time 0.002901/0.1227, allocations: 1.708 MB / 0.7015 GB, free: 1.887 MB / 0.5262 GB
Notification: Performance of preOpt resolveLoops (simulation): time 0.001962/0.1246, allocations: 1.203 MB / 0.7027 GB, free: 0.6562 MB / 0.5262 GB
Notification: Performance of preOpt evalFunc (simulation): time 9.499e-05/0.1247, allocations: 41.92 kB / 0.7027 GB, free: 0.6172 MB / 0.5262 GB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.003553/0.1283, allocations: 2.097 MB / 0.7047 GB, free: 14.43 MB / 0.5418 GB
Notification: Performance of preOpt simplifyInStream (simulation): time 0.00863/0.1369, allocations: 1.86 MB / 0.7066 GB, free: 12.61 MB / 0.5418 GB
Notification: Performance of pre-optimization done (n=198): time 1.057e-05/0.1369, allocations: 0 / 0.7066 GB, free: 12.61 MB / 0.5418 GB
Notification: Performance of matching and sorting (n=202): time 0.01896/0.1559, allocations: 7.705 MB / 0.7141 GB, free: 4.766 MB / 0.5418 GB
Notification: Performance of inlineWhenForInitialization (initialization): time 0.0005437/0.1564, allocations: 401.8 kB / 0.7145 GB, free: 4.289 MB / 0.5418 GB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.001698/0.1581, allocations: 1.1 MB / 0.7155 GB, free: 3.164 MB / 0.5418 GB
Notification: Performance of collectPreVariables (initialization): time 0.000275/0.1584, allocations: 73.7 kB / 0.7156 GB, free: 3.086 MB / 0.5418 GB
Notification: Performance of collectInitialEqns (initialization): time 0.0008035/0.1592, allocations: 0.7703 MB / 0.7164 GB, free: 2.305 MB / 0.5418 GB
Notification: Performance of collectInitialBindings (initialization): time 0.0009817/0.1602, allocations: 0.7829 MB / 0.7171 GB, free: 1.516 MB / 0.5418 GB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.001293/0.1615, allocations: 0.6697 MB / 0.7178 GB, free: 0.8359 MB / 0.5418 GB
Notification: Performance of setup shared object (initialization): time 0.0002519/0.1617, allocations: 476.8 kB / 0.7182 GB, free: 376 kB / 0.5418 GB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.00308/0.1648, allocations: 1.562 MB / 0.7198 GB, free: 14.75 MB / 0.5574 GB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.004004/0.1688, allocations: 2.233 MB / 0.7219 GB, free: 12.16 MB / 0.5574 GB
Notification: Performance of analyzeInitialSystem (initialization): time 0.009669/0.1785, allocations: 4.928 MB / 0.7268 GB, free: 6.871 MB / 0.5574 GB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 1.592e-05/0.1785, allocations: 4 kB / 0.7268 GB, free: 6.867 MB / 0.5574 GB
Notification: Performance of matching and sorting (n=298) (initialization): time 0.009097/0.1876, allocations: 4.103 MB / 0.7308 GB, free: 2.645 MB / 0.5574 GB
Notification: Performance of prepare postOptimizeDAE: time 0.0002201/0.1878, allocations: 265.8 kB / 0.731 GB, free: 2.332 MB / 0.5574 GB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 2.69e-05/0.1878, allocations: 12 kB / 0.731 GB, free: 2.32 MB / 0.5574 GB
Notification: Performance of postOpt tearingSystem (initialization): time 4.297e-05/0.1879, allocations: 24 kB / 0.7311 GB, free: 2.297 MB / 0.5574 GB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.003948/0.1918, allocations: 0.8388 MB / 0.7319 GB, free: 1.457 MB / 0.5574 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 5.374e-05/0.1919, allocations: 35.84 kB / 0.7319 GB, free: 1.422 MB / 0.5574 GB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.002501/0.1944, allocations: 95.95 kB / 0.732 GB, free: 1.328 MB / 0.5574 GB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.0004252/0.1948, allocations: 215.7 kB / 0.7322 GB, free: 1.117 MB / 0.5574 GB
Warning: Assuming fixed start value for the following 42 variables:
         venous.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         lungs.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         arterial.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         adipose.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         bone.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         brain.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         heart.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         muscle.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         skin.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         gut.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         spleen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         liver.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         kidney.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         gonads.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         rest.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         lumenCompartment.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         periodicOralDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         periodicOralDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         periodicOralDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         periodicIMDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         periodicIMDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         periodicIMDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         periodicIVDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         periodicIVDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         periodicIADose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         periodicIADose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         nasal_mucosa.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         periodicNasalDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         periodicNasalDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         periodicNasalDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         periodicNasalDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         periodicNasalDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         periodicIMDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         periodicIMDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         periodicOralDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         periodicOralDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         lumenCompartment.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         lumenCompartment.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         periodicNasalDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true )  type: Boolean
         periodicIMDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true )  type: Boolean
         periodicOralDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true )  type: Boolean
         lumenCompartment.rising:DISCRETE(fixed = true protected = true )  type: Boolean
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 55
 * Number of states: 0 ()
 * Number of discrete variables: 57 ($PRE.periodicNasalDose.absorptionLumen.Cmin,periodicNasalDose.absorptionLumen.Cmin,$PRE.periodicNasalDose.absorptionLumen.Cmax,periodicNasalDose.absorptionLumen.Cmax,$PRE.periodicIMDose.absorptionLumen.Cmin,periodicIMDose.absorptionLumen.Cmin,$PRE.periodicIMDose.absorptionLumen.Cmax,periodicIMDose.absorptionLumen.Cmax,$PRE.periodicOralDose.absorptionLumen.Cmin,periodicOralDose.absorptionLumen.Cmin,$PRE.periodicOralDose.absorptionLumen.Cmax,periodicOralDose.absorptionLumen.Cmax,$PRE.lumenCompartment.Cmin,lumenCompartment.Cmin,$PRE.lumenCompartment.Cmax,lumenCompartment.Cmax,$PRE.periodicNasalDose.pulse.count,$PRE.periodicNasalDose.pulse.T_start,$PRE.periodicNasalDose.absorptionLumen.rising,$PRE.periodicIADose.pulse.count,$PRE.periodicIADose.pulse.T_start,$PRE.periodicIVDose.pulse.count,$PRE.periodicIVDose.pulse.T_start,$PRE.periodicIMDose.pulse.count,$PRE.periodicIMDose.pulse.T_start,$PRE.periodicIMDose.absorptionLumen.rising,$PRE.periodicOralDose.pulse.count,$PRE.periodicOralDose.pulse.T_start,$PRE.periodicOralDose.absorptionLumen.rising,$PRE.lumenCompartment.rising,periodicNasalDose.pulse.count,periodicNasalDose.pulse.T_start,periodicNasalDose.absorptionLumen.rising,periodicIADose.pulse.count,periodicIADose.pulse.T_start,periodicIVDose.pulse.count,periodicIVDose.pulse.T_start,periodicIMDose.pulse.count,periodicIMDose.pulse.T_start,periodicIMDose.absorptionLumen.rising,periodicOralDose.pulse.count,periodicOralDose.pulse.T_start,periodicOralDose.absorptionLumen.rising,lumenCompartment.rising,$whenCondition8,$whenCondition7,$whenCondition6,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1,$whenCondition9,$whenCondition10,$whenCondition11,$whenCondition12,$whenCondition13)
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (289):
 * Single equations (assignments): 280
 * Array equations: 0
 * Algorithm blocks: 9
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of prepare postOptimizeDAE: time 0.001593/0.1964, allocations: 0.6921 MB / 0.7329 GB, free: 424 kB / 0.5574 GB
Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0007555/0.1972, allocations: 223 kB / 0.7331 GB, free: 200 kB / 0.5574 GB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.008388/0.2055, allocations: 3.457 MB / 0.7365 GB, free: 12.75 MB / 0.573 GB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 2.141e-05/0.2056, allocations: 16 kB / 0.7365 GB, free: 12.73 MB / 0.573 GB
Notification: Performance of postOpt constantLinearSystem (simulation): time 6.612e-06/0.2056, allocations: 0 / 0.7365 GB, free: 12.73 MB / 0.573 GB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 2.191e-05/0.2056, allocations: 11.97 kB / 0.7365 GB, free: 12.72 MB / 0.573 GB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.01022/0.2158, allocations: 4.739 MB / 0.7411 GB, free: 7.887 MB / 0.573 GB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 6.913e-06/0.2158, allocations: 0 / 0.7411 GB, free: 7.887 MB / 0.573 GB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.002855/0.2187, allocations: 439.2 kB / 0.7415 GB, free: 7.457 MB / 0.573 GB
Notification: Performance of postOpt tearingSystem (simulation): time 1.752e-05/0.2187, allocations: 12.03 kB / 0.7416 GB, free: 7.445 MB / 0.573 GB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 0.0002857/0.219, allocations: 111.8 kB / 0.7417 GB, free: 7.34 MB / 0.573 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 2.302e-05/0.219, allocations: 8 kB / 0.7417 GB, free: 7.332 MB / 0.573 GB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 3.076e-06/0.219, allocations: 0 / 0.7417 GB, free: 7.332 MB / 0.573 GB
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.009566/0.2286, allocations: 4.582 MB / 0.7461 GB, free: 2.648 MB / 0.573 GB
Notification: Performance of postOpt removeConstants (simulation): time 0.001397/0.23, allocations: 386.6 kB / 0.7465 GB, free: 2.27 MB / 0.573 GB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0004542/0.2304, allocations: 59.92 kB / 0.7466 GB, free: 2.211 MB / 0.573 GB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.001769/0.2322, allocations: 71.95 kB / 0.7466 GB, free: 2.141 MB / 0.573 GB
Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0004381/0.2326, allocations: 177.7 kB / 0.7468 GB, free: 1.965 MB / 0.573 GB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 0.0002621/0.2329, allocations: 119.8 kB / 0.7469 GB, free: 1.848 MB / 0.573 GB
Notification: Performance of sorting global known variables: time 0.00112/0.234, allocations: 0.7364 MB / 0.7476 GB, free: 1.102 MB / 0.573 GB
Notification: Performance of sort global known variables: time 7e-08/0.234, allocations: 0 / 0.7476 GB, free: 1.102 MB / 0.573 GB
Notification: Performance of remove unused functions: time 0.002079/0.2361, allocations: 0.625 MB / 0.7483 GB, free: 488 kB / 0.573 GB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 2
 * Number of states: 52 (venous.M,venous.AUC,lungs.M,lungs.AUC,arterial.M,arterial.AUC,adipose.M,adipose.AUC,bone.M,bone.AUC,brain.M,brain.AUC,heart.M,heart.AUC,muscle.M,muscle.AUC,skin.M,skin.AUC,gut.M,gut.AUC,spleen.M,spleen.AUC,liver.M,liver.AUC,kidney.M,kidney.AUC,kidneyElim.MExc,liverElim.MExc,gonads.M,gonads.AUC,rest.M,rest.AUC,lumenCompartment.C,lumenCompartment.AUC,periodicOralDose.TotalCumulativeMass,periodicOralDose.absorptionLumen.C,periodicOralDose.absorptionLumen.AUC,periodicOralDose.variableDose.TotalCumulativeMass,periodicIMDose.TotalCumulativeMass,periodicIMDose.absorptionLumen.C,periodicIMDose.absorptionLumen.AUC,periodicIMDose.variableDose.TotalCumulativeMass,periodicIVDose.TotalCumulativeMass,periodicIVDose.variableDose.TotalCumulativeMass,periodicIADose.TotalCumulativeMass,periodicIADose.variableDose.TotalCumulativeMass,nasal_mucosa.M,nasal_mucosa.AUC,periodicNasalDose.TotalCumulativeMass,periodicNasalDose.absorptionLumen.C,periodicNasalDose.absorptionLumen.AUC,periodicNasalDose.variableDose.TotalCumulativeMass)
 * Number of discrete variables: 35 ($whenCondition13,$whenCondition12,$whenCondition11,$whenCondition10,$whenCondition9,$whenCondition1,$whenCondition2,$whenCondition3,$whenCondition4,$whenCondition5,$whenCondition6,$whenCondition7,$whenCondition8,lumenCompartment.Cmax,lumenCompartment.Cmin,lumenCompartment.rising,periodicOralDose.absorptionLumen.Cmax,periodicOralDose.absorptionLumen.Cmin,periodicOralDose.absorptionLumen.rising,periodicOralDose.pulse.T_start,periodicOralDose.pulse.count,periodicIMDose.absorptionLumen.Cmax,periodicIMDose.absorptionLumen.Cmin,periodicIMDose.absorptionLumen.rising,periodicIMDose.pulse.T_start,periodicIMDose.pulse.count,periodicIVDose.pulse.T_start,periodicIVDose.pulse.count,periodicIADose.pulse.T_start,periodicIADose.pulse.count,periodicNasalDose.absorptionLumen.Cmax,periodicNasalDose.absorptionLumen.Cmin,periodicNasalDose.absorptionLumen.rising,periodicNasalDose.pulse.T_start,periodicNasalDose.pulse.count)
 * Number of discrete states: 25 (periodicOralDose.pulse.count,periodicIMDose.pulse.count,periodicIVDose.pulse.count,periodicIADose.pulse.count,periodicNasalDose.pulse.count,periodicNasalDose.absorptionLumen.Cmin,$whenCondition8,periodicNasalDose.absorptionLumen.Cmax,$whenCondition7,periodicNasalDose.absorptionLumen.rising,periodicIMDose.absorptionLumen.Cmin,$whenCondition6,periodicIMDose.absorptionLumen.Cmax,$whenCondition5,periodicIMDose.absorptionLumen.rising,periodicOralDose.absorptionLumen.Cmin,$whenCondition4,periodicOralDose.absorptionLumen.Cmax,$whenCondition3,periodicOralDose.absorptionLumen.rising,lumenCompartment.Cmin,$whenCondition2,lumenCompartment.Cmax,$whenCondition1,lumenCompartment.rising)
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (190):
 * Single equations (assignments): 176
 * Array equations: 0
 * Algorithm blocks: 4
 * Record equations: 0
 * When equations: 10
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of Backend phase and start with SimCode phase: time 0.0003835/0.2365, allocations: 207.6 kB / 0.7485 GB, free: 276 kB / 0.573 GB
Notification: Performance of simCode: created initialization part: time 0.007337/0.2438, allocations: 3.673 MB / 0.752 GB, free: 12.4 MB / 0.5887 GB
Notification: Performance of simCode: created event and clocks part: time 3.697e-06/0.2438, allocations: 4 kB / 0.752 GB, free: 12.4 MB / 0.5887 GB
Notification: Performance of simCode: created simulation system equations: time 0.003038/0.2469, allocations: 1.628 MB / 0.7536 GB, free: 10.7 MB / 0.5887 GB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.002861/0.2497, allocations: 0.5723 MB / 0.7542 GB, free: 10.15 MB / 0.5887 GB
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.01103/0.2607, allocations: 5.446 MB / 0.7595 GB, free: 4.809 MB / 0.5887 GB
Notification: Performance of simCode: some other stuff during SimCode phase: time 0.001048/0.2618, allocations: 0.7767 MB / 0.7603 GB, free: 3.992 MB / 0.5887 GB
Notification: Performance of simCode: alias equations: time 0.002834/0.2646, allocations: 494 kB / 0.7607 GB, free: 3.637 MB / 0.5887 GB
Notification: Performance of simCode: all other stuff during SimCode phase: time 0.001451/0.2661, allocations: 332 kB / 0.7611 GB, free: 3.309 MB / 0.5887 GB
Notification: Performance of SimCode: time 1.623e-06/0.2661, allocations: 0 / 0.7611 GB, free: 3.309 MB / 0.5887 GB
Notification: Performance of Templates: time 0.07339/0.3395, allocations: 41.57 MB / 0.8017 GB, free: 10.66 MB / 0.6355 GB
"
[Timeout remaining time 660]
make -j1 -f Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.makefile [Timeout 660]
(rm -f Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.sim & ./Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body -abortSlowSimulation -alarm=240  -lv LOG_STATS > Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 9.904607661999762]