Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PK_2C_generic.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.002061/0.002061, allocations: 85.48 kB / 19.44 MB, free: 344 kB / 13.93 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.003039/0.003039, allocations: 173.2 kB / 22.76 MB, free: 1.664 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.618/1.618, allocations: 177.1 MB / 203.1 MB, free: 5.613 MB / 186.7 MB " [Timeout remaining time 178] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180] "[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory. Missing names are: Paracetamol_Experiment Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 3.451/3.451, allocations: 274.5 MB / 0.5215 GB, free: 14.17 MB / 458.7 MB " [Timeout remaining time 176] Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: translateModel(Pharmacolibrary.Examples.Pharmacogenomics.PK_2C_generic,tolerance=1e-12,outputFormat="empty",numberOfIntervals=864,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PK_2C_generic") translateModel(Pharmacolibrary.Examples.Pharmacogenomics.PK_2C_generic,tolerance=1e-12,outputFormat="empty",numberOfIntervals=864,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PK_2C_generic") [Timeout 660] "Notification: Performance of FrontEnd - loaded program: time 2.244e-06/2.244e-06, allocations: 0 / 0.6472 GB, free: 39.07 MB / 0.5262 GB Notification: Performance of FrontEnd - Absyn->SCode: time 3.333e-05/3.558e-05, allocations: 10.28 kB / 0.6472 GB, free: 39.07 MB / 0.5262 GB Notification: Performance of NFInst.instantiate(Pharmacolibrary.Examples.Pharmacogenomics.PK_2C_generic): time 0.01228/0.01232, allocations: 13.31 MB / 0.6602 GB, free: 30.32 MB / 0.5262 GB Notification: Performance of NFInst.instExpressions: time 0.006279/0.0186, allocations: 2.681 MB / 0.6628 GB, free: 28.41 MB / 0.5262 GB Notification: Performance of NFInst.updateImplicitVariability: time 0.00225/0.02085, allocations: 20.25 kB / 0.6629 GB, free: 28.41 MB / 0.5262 GB Notification: Performance of NFTyping.typeComponents: time 0.0007778/0.02162, allocations: 311.9 kB / 0.6632 GB, free: 28.23 MB / 0.5262 GB Notification: Performance of NFTyping.typeBindings: time 0.002685/0.02431, allocations: 0.9095 MB / 0.664 GB, free: 27.56 MB / 0.5262 GB Notification: Performance of NFTyping.typeClassSections: time 0.001478/0.02579, allocations: 0.6693 MB / 0.6647 GB, free: 27.11 MB / 0.5262 GB Notification: Performance of NFFlatten.flatten: time 0.003719/0.02951, allocations: 3.273 MB / 0.6679 GB, free: 25.25 MB / 0.5262 GB Notification: Performance of NFFlatten.resolveConnections: time 0.0007974/0.0303, allocations: 459.9 kB / 0.6683 GB, free: 24.98 MB / 0.5262 GB Notification: Performance of NFEvalConstants.evaluate: time 0.002544/0.03285, allocations: 1.649 MB / 0.6699 GB, free: 24.24 MB / 0.5262 GB Notification: Performance of NFSimplifyModel.simplify: time 0.001341/0.03419, allocations: 0.9372 MB / 0.6709 GB, free: 23.91 MB / 0.5262 GB Notification: Performance of NFPackage.collectConstants: time 0.0003814/0.03457, allocations: 282.3 kB / 0.6711 GB, free: 23.91 MB / 0.5262 GB Notification: Performance of NFFlatten.collectFunctions: time 0.0004955/0.03507, allocations: 286.3 kB / 0.6714 GB, free: 23.91 MB / 0.5262 GB Notification: Performance of NFScalarize.scalarize: time 0.0003066/0.03537, allocations: 0.511 MB / 0.6719 GB, free: 23.53 MB / 0.5262 GB Notification: Performance of NFVerifyModel.verify: time 0.001083/0.03645, allocations: 0.9514 MB / 0.6728 GB, free: 23.1 MB / 0.5262 GB Notification: Performance of NFConvertDAE.convert: time 0.003338/0.03979, allocations: 3.101 MB / 0.6759 GB, free: 21.76 MB / 0.5262 GB Notification: Performance of FrontEnd - DAE generated: time 5.851e-06/0.0398, allocations: 0 / 0.6759 GB, free: 21.76 MB / 0.5262 GB Notification: Performance of FrontEnd: time 2.244e-06/0.0398, allocations: 1.375 kB / 0.6759 GB, free: 21.76 MB / 0.5262 GB Notification: Performance of Transformations before backend: time 5.918e-05/0.03986, allocations: 0 / 0.6759 GB, free: 21.76 MB / 0.5262 GB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 402 * Number of variables: 402 Notification: Performance of Generate backend data structure: time 0.005573/0.04543, allocations: 3.423 MB / 0.6792 GB, free: 19.25 MB / 0.5262 GB Notification: Performance of prepare preOptimizeDAE: time 4.744e-05/0.04548, allocations: 13.84 kB / 0.6792 GB, free: 19.25 MB / 0.5262 GB Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0006713/0.04615, allocations: 380.1 kB / 0.6796 GB, free: 19.08 MB / 0.5262 GB Notification: Performance of preOpt evaluateParameters (simulation): time 0.001642/0.04779, allocations: 1.001 MB / 0.6806 GB, free: 18.38 MB / 0.5262 GB Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.0001038/0.0479, allocations: 123.7 kB / 0.6807 GB, free: 18.34 MB / 0.5262 GB Notification: Performance of preOpt expandDerOperator (simulation): time 0.0002949/0.04819, allocations: 195.2 kB / 0.6809 GB, free: 18.27 MB / 0.5262 GB Notification: Performance of preOpt clockPartitioning (simulation): time 0.003357/0.05155, allocations: 2.372 MB / 0.6832 GB, free: 16.86 MB / 0.5262 GB Notification: Performance of preOpt findStateOrder (simulation): time 9.675e-05/0.05165, allocations: 33.3 kB / 0.6832 GB, free: 16.84 MB / 0.5262 GB Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.0001484/0.05179, allocations: 69.19 kB / 0.6833 GB, free: 16.79 MB / 0.5262 GB Notification: Performance of preOpt inlineArrayEqn (simulation): time 3.373e-05/0.05183, allocations: 41.94 kB / 0.6833 GB, free: 16.79 MB / 0.5262 GB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.003347/0.05518, allocations: 1.947 MB / 0.6852 GB, free: 15.78 MB / 0.5262 GB Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.009186/0.06436, allocations: 6.291 MB / 0.6914 GB, free: 11.17 MB / 0.5262 GB Notification: Performance of preOpt comSubExp (simulation): time 0.003283/0.06764, allocations: 2.048 MB / 0.6934 GB, free: 9.773 MB / 0.5262 GB Notification: Performance of preOpt resolveLoops (simulation): time 0.001276/0.06892, allocations: 1.273 MB / 0.6946 GB, free: 8.406 MB / 0.5262 GB Notification: Performance of preOpt evalFunc (simulation): time 8.963e-05/0.06901, allocations: 32 kB / 0.6946 GB, free: 8.375 MB / 0.5262 GB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.002242/0.07125, allocations: 3.113 MB / 0.6977 GB, free: 4.867 MB / 0.5262 GB Notification: Performance of pre-optimization done (n=264): time 4.549e-06/0.07126, allocations: 4 kB / 0.6977 GB, free: 4.863 MB / 0.5262 GB Notification: Performance of matching and sorting (n=282): time 0.01653/0.08779, allocations: 10.33 MB / 0.7078 GB, free: 9.816 MB / 0.5418 GB Notification: Performance of inlineWhenForInitialization (initialization): time 0.001423/0.08921, allocations: 1.652 MB / 0.7094 GB, free: 7.789 MB / 0.5418 GB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.002731/0.09194, allocations: 1.572 MB / 0.7109 GB, free: 6.184 MB / 0.5418 GB Notification: Performance of collectPreVariables (initialization): time 0.0004886/0.09243, allocations: 117.7 kB / 0.711 GB, free: 6.062 MB / 0.5418 GB Notification: Performance of collectInitialEqns (initialization): time 0.0009407/0.09337, allocations: 0.8329 MB / 0.7118 GB, free: 5.223 MB / 0.5418 GB Notification: Performance of collectInitialBindings (initialization): time 0.001325/0.0947, allocations: 1.043 MB / 0.7129 GB, free: 4.176 MB / 0.5418 GB Notification: Performance of simplifyInitialFunctions (initialization): time 0.001511/0.09621, allocations: 0.6509 MB / 0.7135 GB, free: 3.512 MB / 0.5418 GB Notification: Performance of setup shared object (initialization): time 0.0002645/0.09647, allocations: 480.7 kB / 0.7139 GB, free: 3.039 MB / 0.5418 GB Notification: Performance of preBalanceInitialSystem (initialization): time 0.002813/0.09928, allocations: 1.742 MB / 0.7156 GB, free: 1.137 MB / 0.5418 GB Notification: Performance of partitionIndependentBlocks (initialization): time 0.003752/0.103, allocations: 2.81 MB / 0.7184 GB, free: 13.71 MB / 0.5574 GB Notification: Performance of analyzeInitialSystem (initialization): time 0.008686/0.1117, allocations: 5.53 MB / 0.7238 GB, free: 7.367 MB / 0.5574 GB Notification: Performance of solveInitialSystemEqSystem (initialization): time 3.916e-05/0.1118, allocations: 8 kB / 0.7238 GB, free: 7.359 MB / 0.5574 GB Notification: Performance of matching and sorting (n=426) (initialization): time 0.008496/0.1203, allocations: 4.609 MB / 0.7283 GB, free: 2.445 MB / 0.5574 GB Notification: Performance of prepare postOptimizeDAE: time 0.0005592/0.1208, allocations: 0.6727 MB / 0.729 GB, free: 1.625 MB / 0.5574 GB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 4.568e-05/0.1209, allocations: 24 kB / 0.729 GB, free: 1.602 MB / 0.5574 GB Notification: Performance of postOpt tearingSystem (initialization): time 7.074e-05/0.1209, allocations: 40.03 kB / 0.729 GB, free: 1.562 MB / 0.5574 GB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.002414/0.1233, allocations: 0.663 MB / 0.7297 GB, free: 0.8984 MB / 0.5574 GB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 6.471e-05/0.1234, allocations: 47.86 kB / 0.7297 GB, free: 0.8516 MB / 0.5574 GB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.002063/0.1255, allocations: 143.9 kB / 0.7298 GB, free: 0.7109 MB / 0.5574 GB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.0002391/0.1257, allocations: 128 kB / 0.73 GB, free: 0.5859 MB / 0.5574 GB Warning: Assuming fixed start value for the following 84 variables: ref_low.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real ref_low.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real ref_low.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real ref_low.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real ref_low.peripheral.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real ref_high.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real ref_high.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real ref_high.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real ref_high.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real ref_high.peripheral.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real ref.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real ref.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real ref.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real ref.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real ref.peripheral.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient_low.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient_low.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient_low.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient_low.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient_low.peripheral.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient_high.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient_high.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient_high.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient_high.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient_high.peripheral.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient.peripheral.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient.peripheral.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient.peripheral.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_high.peripheral.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_high.peripheral.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_high.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_high.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_high.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_high.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_low.peripheral.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_low.peripheral.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_low.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_low.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_low.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_low.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref.peripheral.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref.peripheral.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref_high.peripheral.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref_high.peripheral.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref_high.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref_high.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref_high.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref_high.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref_low.peripheral.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref_low.peripheral.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref_low.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref_low.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref_low.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref_low.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient.peripheral.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient_high.peripheral.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient_high.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient_high.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient_low.peripheral.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient_low.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient_low.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean ref.peripheral.rising:DISCRETE(fixed = true protected = true ) type: Boolean ref.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean ref.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean ref_high.peripheral.rising:DISCRETE(fixed = true protected = true ) type: Boolean ref_high.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean ref_high.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean ref_low.peripheral.rising:DISCRETE(fixed = true protected = true ) type: Boolean ref_low.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean ref_low.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 96 * Number of states: 0 () * Number of discrete variables: 174 ($PRE.patient.peripheral.Cmin,patient.peripheral.Cmin,$PRE.patient.peripheral.Cmax,patient.peripheral.Cmax,$PRE.patient.periodicDose.absorptionLumen.Cmin,patient.periodicDose.absorptionLumen.Cmin,$PRE.patient.periodicDose.absorptionLumen.Cmax,patient.periodicDose.absorptionLumen.Cmax,$PRE.patient.central.Cmin,patient.central.Cmin,$PRE.patient.central.Cmax,patient.central.Cmax,$PRE.patient_high.peripheral.Cmin,patient_high.peripheral.Cmin,$PRE.patient_high.peripheral.Cmax,patient_high.peripheral.Cmax,$PRE.patient_high.periodicDose.absorptionLumen.Cmin,patient_high.periodicDose.absorptionLumen.Cmin,$PRE.patient_high.periodicDose.absorptionLumen.Cmax,patient_high.periodicDose.absorptionLumen.Cmax,$PRE.patient_high.central.Cmin,patient_high.central.Cmin,$PRE.patient_high.central.Cmax,patient_high.central.Cmax,$PRE.patient_low.peripheral.Cmin,patient_low.peripheral.Cmin,$PRE.patient_low.peripheral.Cmax,patient_low.peripheral.Cmax,$PRE.patient_low.periodicDose.absorptionLumen.Cmin,patient_low.periodicDose.absorptionLumen.Cmin,$PRE.patient_low.periodicDose.absorptionLumen.Cmax,patient_low.periodicDose.absorptionLumen.Cmax,$PRE.patient_low.central.Cmin,patient_low.central.Cmin,$PRE.patient_low.central.Cmax,patient_low.central.Cmax,$PRE.ref.peripheral.Cmin,ref.peripheral.Cmin,$PRE.ref.peripheral.Cmax,ref.peripheral.Cmax,$PRE.ref.periodicDose.absorptionLumen.Cmin,ref.periodicDose.absorptionLumen.Cmin,$PRE.ref.periodicDose.absorptionLumen.Cmax,ref.periodicDose.absorptionLumen.Cmax,$PRE.ref.central.Cmin,ref.central.Cmin,$PRE.ref.central.Cmax,ref.central.Cmax,$PRE.ref_high.peripheral.Cmin,ref_high.peripheral.Cmin,$PRE.ref_high.peripheral.Cmax,ref_high.peripheral.Cmax,$PRE.ref_high.periodicDose.absorptionLumen.Cmin,ref_high.periodicDose.absorptionLumen.Cmin,$PRE.ref_high.periodicDose.absorptionLumen.Cmax,ref_high.periodicDose.absorptionLumen.Cmax,$PRE.ref_high.central.Cmin,ref_high.central.Cmin,$PRE.ref_high.central.Cmax,ref_high.central.Cmax,$PRE.ref_low.peripheral.Cmin,ref_low.peripheral.Cmin,$PRE.ref_low.peripheral.Cmax,ref_low.peripheral.Cmax,$PRE.ref_low.periodicDose.absorptionLumen.Cmin,ref_low.periodicDose.absorptionLumen.Cmin,$PRE.ref_low.periodicDose.absorptionLumen.Cmax,ref_low.periodicDose.absorptionLumen.Cmax,$PRE.ref_low.central.Cmin,ref_low.central.Cmin,$PRE.ref_low.central.Cmax,ref_low.central.Cmax,$PRE.patient.peripheral.rising,$PRE.patient.periodicDose.pulse.count,$PRE.patient.periodicDose.pulse.T_start,$PRE.patient.periodicDose.absorptionLumen.rising,$PRE.patient.central.rising,patient.peripheral.rising,patient.periodicDose.pulse.count,patient.periodicDose.pulse.T_start,patient.periodicDose.absorptionLumen.rising,patient.central.rising,$whenCondition41,$whenCondition40,$whenCondition39,$whenCondition38,$whenCondition37,$whenCondition36,$whenCondition42,$PRE.patient_high.peripheral.rising,$PRE.patient_high.periodicDose.pulse.count,$PRE.patient_high.periodicDose.pulse.T_start,$PRE.patient_high.periodicDose.absorptionLumen.rising,$PRE.patient_high.central.rising,patient_high.peripheral.rising,patient_high.periodicDose.pulse.count,patient_high.periodicDose.pulse.T_start,patient_high.periodicDose.absorptionLumen.rising,patient_high.central.rising,$whenCondition34,$whenCondition33,$whenCondition32,$whenCondition31,$whenCondition30,$whenCondition29,$whenCondition35,$PRE.patient_low.peripheral.rising,$PRE.patient_low.periodicDose.pulse.count,$PRE.patient_low.periodicDose.pulse.T_start,$PRE.patient_low.periodicDose.absorptionLumen.rising,$PRE.patient_low.central.rising,patient_low.peripheral.rising,patient_low.periodicDose.pulse.count,patient_low.periodicDose.pulse.T_start,patient_low.periodicDose.absorptionLumen.rising,patient_low.central.rising,$whenCondition27,$whenCondition26,$whenCondition25,$whenCondition24,$whenCondition23,$whenCondition22,$whenCondition28,$PRE.ref.peripheral.rising,$PRE.ref.periodicDose.pulse.count,$PRE.ref.periodicDose.pulse.T_start,$PRE.ref.periodicDose.absorptionLumen.rising,$PRE.ref.central.rising,ref.peripheral.rising,ref.periodicDose.pulse.count,ref.periodicDose.pulse.T_start,ref.periodicDose.absorptionLumen.rising,ref.central.rising,$whenCondition20,$whenCondition19,$whenCondition18,$whenCondition17,$whenCondition16,$whenCondition15,$whenCondition21,$PRE.ref_high.peripheral.rising,$PRE.ref_high.periodicDose.pulse.count,$PRE.ref_high.periodicDose.pulse.T_start,$PRE.ref_high.periodicDose.absorptionLumen.rising,$PRE.ref_high.central.rising,ref_high.peripheral.rising,ref_high.periodicDose.pulse.count,ref_high.periodicDose.pulse.T_start,ref_high.periodicDose.absorptionLumen.rising,ref_high.central.rising,$whenCondition13,$whenCondition12,$whenCondition11,$whenCondition10,$whenCondition9,$whenCondition8,$whenCondition14,$PRE.ref_low.peripheral.rising,$PRE.ref_low.periodicDose.pulse.count,$PRE.ref_low.periodicDose.pulse.T_start,$PRE.ref_low.periodicDose.absorptionLumen.rising,$PRE.ref_low.central.rising,ref_low.peripheral.rising,ref_low.periodicDose.pulse.count,ref_low.periodicDose.pulse.T_start,ref_low.periodicDose.absorptionLumen.rising,ref_low.central.rising,$whenCondition6,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1,$whenCondition7) * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (402): * Single equations (assignments): 378 * Array equations: 0 * Algorithm blocks: 24 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of prepare postOptimizeDAE: time 0.002377/0.1281, allocations: 1.474 MB / 0.7314 GB, free: 15.04 MB / 0.573 GB Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0007369/0.1288, allocations: 346.6 kB / 0.7317 GB, free: 14.7 MB / 0.573 GB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0005217/0.1293, allocations: 208.6 kB / 0.7319 GB, free: 14.49 MB / 0.573 GB Notification: Performance of postOpt inlineArrayEqn (simulation): time 2.945e-05/0.1294, allocations: 28 kB / 0.732 GB, free: 14.46 MB / 0.573 GB Notification: Performance of postOpt constantLinearSystem (simulation): time 2.057e-05/0.1294, allocations: 0 / 0.732 GB, free: 14.46 MB / 0.573 GB Notification: Performance of postOpt simplifysemiLinear (simulation): time 3.004e-05/0.1294, allocations: 15.95 kB / 0.732 GB, free: 14.45 MB / 0.573 GB Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.0114/0.1408, allocations: 6.639 MB / 0.7385 GB, free: 7.539 MB / 0.573 GB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 9.178e-06/0.1408, allocations: 7.25 kB / 0.7385 GB, free: 7.535 MB / 0.573 GB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.002115/0.143, allocations: 427.5 kB / 0.7389 GB, free: 7.117 MB / 0.573 GB Notification: Performance of postOpt tearingSystem (simulation): time 2.277e-05/0.143, allocations: 8 kB / 0.7389 GB, free: 7.109 MB / 0.573 GB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 0.0002453/0.1432, allocations: 103.9 kB / 0.739 GB, free: 7.008 MB / 0.573 GB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 1.654e-05/0.1432, allocations: 11.94 kB / 0.739 GB, free: 6.996 MB / 0.573 GB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 2.454e-06/0.1432, allocations: 0 / 0.739 GB, free: 6.996 MB / 0.573 GB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.01017/0.1534, allocations: 6.367 MB / 0.7452 GB, free: 224 kB / 0.573 GB Notification: Performance of postOpt removeConstants (simulation): time 0.001545/0.155, allocations: 434.6 kB / 0.7456 GB, free: 15.79 MB / 0.5887 GB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0005705/0.1555, allocations: 120 kB / 0.7457 GB, free: 15.67 MB / 0.5887 GB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.001265/0.1568, allocations: 99.95 kB / 0.7458 GB, free: 15.57 MB / 0.5887 GB Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0006281/0.1574, allocations: 275.3 kB / 0.7461 GB, free: 15.31 MB / 0.5887 GB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 0.0002542/0.1577, allocations: 103.9 kB / 0.7462 GB, free: 15.21 MB / 0.5887 GB Notification: Performance of sorting global known variables: time 0.001918/0.1596, allocations: 0.9162 MB / 0.7471 GB, free: 14.29 MB / 0.5887 GB Notification: Performance of sort global known variables: time 1e-07/0.1596, allocations: 0 / 0.7471 GB, free: 14.29 MB / 0.5887 GB Notification: Performance of remove unused functions: time 0.002799/0.1624, allocations: 0.6601 MB / 0.7477 GB, free: 13.63 MB / 0.5887 GB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 6 * Number of states: 54 (ref_low.central.C,ref_low.central.AUC,ref_low.elim.MExc,ref_low.periodicDose.TotalCumulativeMass,ref_low.periodicDose.absorptionLumen.C,ref_low.periodicDose.absorptionLumen.AUC,ref_low.periodicDose.variableDose.TotalCumulativeMass,ref_low.peripheral.C,ref_low.peripheral.AUC,ref_high.central.C,ref_high.central.AUC,ref_high.elim.MExc,ref_high.periodicDose.TotalCumulativeMass,ref_high.periodicDose.absorptionLumen.C,ref_high.periodicDose.absorptionLumen.AUC,ref_high.periodicDose.variableDose.TotalCumulativeMass,ref_high.peripheral.C,ref_high.peripheral.AUC,ref.central.C,ref.central.AUC,ref.elim.MExc,ref.periodicDose.TotalCumulativeMass,ref.periodicDose.absorptionLumen.C,ref.periodicDose.absorptionLumen.AUC,ref.periodicDose.variableDose.TotalCumulativeMass,ref.peripheral.C,ref.peripheral.AUC,patient_low.central.C,patient_low.central.AUC,patient_low.elim.MExc,patient_low.periodicDose.TotalCumulativeMass,patient_low.periodicDose.absorptionLumen.C,patient_low.periodicDose.absorptionLumen.AUC,patient_low.periodicDose.variableDose.TotalCumulativeMass,patient_low.peripheral.C,patient_low.peripheral.AUC,patient_high.central.C,patient_high.central.AUC,patient_high.elim.MExc,patient_high.periodicDose.TotalCumulativeMass,patient_high.periodicDose.absorptionLumen.C,patient_high.periodicDose.absorptionLumen.AUC,patient_high.periodicDose.variableDose.TotalCumulativeMass,patient_high.peripheral.C,patient_high.peripheral.AUC,patient.central.C,patient.central.AUC,patient.elim.MExc,patient.periodicDose.TotalCumulativeMass,patient.periodicDose.absorptionLumen.C,patient.periodicDose.absorptionLumen.AUC,patient.periodicDose.variableDose.TotalCumulativeMass,patient.peripheral.C,patient.peripheral.AUC) * Number of discrete variables: 108 ($whenCondition7,$whenCondition1,$whenCondition2,$whenCondition3,$whenCondition4,$whenCondition5,$whenCondition6,ref_low.central.Cmax,ref_low.central.Cmin,ref_low.central.rising,ref_low.periodicDose.absorptionLumen.Cmax,ref_low.periodicDose.absorptionLumen.Cmin,ref_low.periodicDose.absorptionLumen.rising,ref_low.periodicDose.pulse.T_start,ref_low.periodicDose.pulse.count,ref_low.peripheral.Cmax,ref_low.peripheral.Cmin,ref_low.peripheral.rising,$whenCondition14,$whenCondition8,$whenCondition9,$whenCondition10,$whenCondition11,$whenCondition12,$whenCondition13,ref_high.central.Cmax,ref_high.central.Cmin,ref_high.central.rising,ref_high.periodicDose.absorptionLumen.Cmax,ref_high.periodicDose.absorptionLumen.Cmin,ref_high.periodicDose.absorptionLumen.rising,ref_high.periodicDose.pulse.T_start,ref_high.periodicDose.pulse.count,ref_high.peripheral.Cmax,ref_high.peripheral.Cmin,ref_high.peripheral.rising,$whenCondition21,$whenCondition15,$whenCondition16,$whenCondition17,$whenCondition18,$whenCondition19,$whenCondition20,ref.central.Cmax,ref.central.Cmin,ref.central.rising,ref.periodicDose.absorptionLumen.Cmax,ref.periodicDose.absorptionLumen.Cmin,ref.periodicDose.absorptionLumen.rising,ref.periodicDose.pulse.T_start,ref.periodicDose.pulse.count,ref.peripheral.Cmax,ref.peripheral.Cmin,ref.peripheral.rising,$whenCondition28,$whenCondition22,$whenCondition23,$whenCondition24,$whenCondition25,$whenCondition26,$whenCondition27,patient_low.central.Cmax,patient_low.central.Cmin,patient_low.central.rising,patient_low.periodicDose.absorptionLumen.Cmax,patient_low.periodicDose.absorptionLumen.Cmin,patient_low.periodicDose.absorptionLumen.rising,patient_low.periodicDose.pulse.T_start,patient_low.periodicDose.pulse.count,patient_low.peripheral.Cmax,patient_low.peripheral.Cmin,patient_low.peripheral.rising,$whenCondition35,$whenCondition29,$whenCondition30,$whenCondition31,$whenCondition32,$whenCondition33,$whenCondition34,patient_high.central.Cmax,patient_high.central.Cmin,patient_high.central.rising,patient_high.periodicDose.absorptionLumen.Cmax,patient_high.periodicDose.absorptionLumen.Cmin,patient_high.periodicDose.absorptionLumen.rising,patient_high.periodicDose.pulse.T_start,patient_high.periodicDose.pulse.count,patient_high.peripheral.Cmax,patient_high.peripheral.Cmin,patient_high.peripheral.rising,$whenCondition42,$whenCondition36,$whenCondition37,$whenCondition38,$whenCondition39,$whenCondition40,$whenCondition41,patient.central.Cmax,patient.central.Cmin,patient.central.rising,patient.periodicDose.absorptionLumen.Cmax,patient.periodicDose.absorptionLumen.Cmin,patient.periodicDose.absorptionLumen.rising,patient.periodicDose.pulse.T_start,patient.periodicDose.pulse.count,patient.peripheral.Cmax,patient.peripheral.Cmin,patient.peripheral.rising) * Number of discrete states: 96 (patient.periodicDose.pulse.count,patient.peripheral.Cmin,$whenCondition41,patient.peripheral.Cmax,$whenCondition40,patient.peripheral.rising,patient.periodicDose.absorptionLumen.Cmin,$whenCondition39,patient.periodicDose.absorptionLumen.Cmax,$whenCondition38,patient.periodicDose.absorptionLumen.rising,patient.central.Cmin,$whenCondition37,patient.central.Cmax,$whenCondition36,patient.central.rising,patient_high.periodicDose.pulse.count,patient_high.peripheral.Cmin,$whenCondition34,patient_high.peripheral.Cmax,$whenCondition33,patient_high.peripheral.rising,patient_high.periodicDose.absorptionLumen.Cmin,$whenCondition32,patient_high.periodicDose.absorptionLumen.Cmax,$whenCondition31,patient_high.periodicDose.absorptionLumen.rising,patient_high.central.Cmin,$whenCondition30,patient_high.central.Cmax,$whenCondition29,patient_high.central.rising,patient_low.periodicDose.pulse.count,patient_low.peripheral.Cmin,$whenCondition27,patient_low.peripheral.Cmax,$whenCondition26,patient_low.peripheral.rising,patient_low.periodicDose.absorptionLumen.Cmin,$whenCondition25,patient_low.periodicDose.absorptionLumen.Cmax,$whenCondition24,patient_low.periodicDose.absorptionLumen.rising,patient_low.central.Cmin,$whenCondition23,patient_low.central.Cmax,$whenCondition22,patient_low.central.rising,ref.periodicDose.pulse.count,ref.peripheral.Cmin,$whenCondition20,ref.peripheral.Cmax,$whenCondition19,ref.peripheral.rising,ref.periodicDose.absorptionLumen.Cmin,$whenCondition18,ref.periodicDose.absorptionLumen.Cmax,$whenCondition17,ref.periodicDose.absorptionLumen.rising,ref.central.Cmin,$whenCondition16,ref.central.Cmax,$whenCondition15,ref.central.rising,ref_high.periodicDose.pulse.count,ref_high.peripheral.Cmin,$whenCondition13,ref_high.peripheral.Cmax,$whenCondition12,ref_high.peripheral.rising,ref_high.periodicDose.absorptionLumen.Cmin,$whenCondition11,ref_high.periodicDose.absorptionLumen.Cmax,$whenCondition10,ref_high.periodicDose.absorptionLumen.rising,ref_high.central.Cmin,$whenCondition9,ref_high.central.Cmax,$whenCondition8,ref_high.central.rising,ref_low.periodicDose.pulse.count,ref_low.peripheral.Cmin,$whenCondition6,ref_low.peripheral.Cmax,$whenCondition5,ref_low.peripheral.rising,ref_low.periodicDose.absorptionLumen.Cmin,$whenCondition4,ref_low.periodicDose.absorptionLumen.Cmax,$whenCondition3,ref_low.periodicDose.absorptionLumen.rising,ref_low.central.Cmin,$whenCondition2,ref_low.central.Cmax,$whenCondition1,ref_low.central.rising) * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (228): * Single equations (assignments): 198 * Array equations: 0 * Algorithm blocks: 18 * Record equations: 0 * When equations: 12 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of Backend phase and start with SimCode phase: time 0.0005815/0.163, allocations: 353.4 kB / 0.7481 GB, free: 13.29 MB / 0.5887 GB Notification: Performance of simCode: created initialization part: time 0.007805/0.1708, allocations: 5.109 MB / 0.7531 GB, free: 7.617 MB / 0.5887 GB Notification: Performance of simCode: created event and clocks part: time 6.051e-06/0.1708, allocations: 0 / 0.7531 GB, free: 7.617 MB / 0.5887 GB Notification: Performance of simCode: created simulation system equations: time 0.004392/0.1752, allocations: 2.842 MB / 0.7558 GB, free: 4.438 MB / 0.5887 GB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.004529/0.1797, allocations: 0.7083 MB / 0.7565 GB, free: 3.781 MB / 0.5887 GB Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.01209/0.1918, allocations: 6.252 MB / 0.7626 GB, free: 13.52 MB / 0.6043 GB Notification: Performance of simCode: some other stuff during SimCode phase: time 0.001145/0.1929, allocations: 0.8743 MB / 0.7635 GB, free: 12.61 MB / 0.6043 GB Notification: Performance of simCode: alias equations: time 0.001456/0.1944, allocations: 243.6 kB / 0.7637 GB, free: 12.38 MB / 0.6043 GB Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0004738/0.1949, allocations: 164.5 kB / 0.7639 GB, free: 12.22 MB / 0.6043 GB Notification: Performance of SimCode: time 1.713e-06/0.1949, allocations: 3.938 kB / 0.7639 GB, free: 12.21 MB / 0.6043 GB Notification: Performance of Templates: time 0.06984/0.2647, allocations: 36.02 MB / 0.7991 GB, free: 10.04 MB / 0.6355 GB " [Timeout remaining time 660] make -j1 -f Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PK_2C_generic.makefile [Timeout 660] (rm -f Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PK_2C_generic.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PK_2C_generic.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PK_2C_generic.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PK_2C_generic.sim & ./Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PK_2C_generic -abortSlowSimulation -alarm=240 -lv LOG_STATS > Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PK_2C_generic.pipe 2>&1) [Timeout 240] [Calling sys.exit(0), Time elapsed: 10.043676241999492]