Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001987/0.001987, allocations: 85.48 kB / 19.44 MB, free: 336 kB / 13.93 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.002937/0.002937, allocations: 169.2 kB / 22.76 MB, free: 1.656 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 2.072/2.072, allocations: 177.1 MB / 203.1 MB, free: 5.594 MB / 186.7 MB
"
[Timeout remaining time 178]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180]
"[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory.
Missing names are:
	Paracetamol_Experiment
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 5.63/5.63, allocations: 274.5 MB / 0.5215 GB, free: 14.09 MB / 458.7 MB
"
[Timeout remaining time 174]
Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment,tolerance=1e-06,outputFormat="empty",numberOfIntervals=86400,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment")
translateModel(Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment,tolerance=1e-06,outputFormat="empty",numberOfIntervals=86400,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.563e-06/1.563e-06, allocations: 0 / 0.6472 GB, free: 39 MB / 0.5262 GB
Notification: Performance of FrontEnd - Absyn->SCode: time 3.09e-05/3.246e-05, allocations: 2.312 kB / 0.6472 GB, free: 39 MB / 0.5262 GB
Notification: Performance of NFInst.instantiate(Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment): time 0.006462/0.006495, allocations: 6.682 MB / 0.6538 GB, free: 34.7 MB / 0.5262 GB
Notification: Performance of NFInst.instExpressions: time 0.004002/0.0105, allocations: 1.996 MB / 0.6557 GB, free: 33.34 MB / 0.5262 GB
Notification: Performance of NFInst.updateImplicitVariability: time 0.0008203/0.01132, allocations: 18.47 kB / 0.6557 GB, free: 33.34 MB / 0.5262 GB
Notification: Performance of NFTyping.typeComponents: time 0.0008812/0.0122, allocations: 290.3 kB / 0.656 GB, free: 33.19 MB / 0.5262 GB
Notification: Performance of NFTyping.typeBindings: time 0.0009649/0.01316, allocations: 473.3 kB / 0.6565 GB, free: 32.86 MB / 0.5262 GB
Notification: Performance of NFTyping.typeClassSections: time 0.001198/0.01436, allocations: 0.5284 MB / 0.657 GB, free: 32.53 MB / 0.5262 GB
Notification: Performance of NFFlatten.flatten: time 0.001861/0.01622, allocations: 1.805 MB / 0.6587 GB, free: 31.52 MB / 0.5262 GB
Notification: Performance of NFFlatten.resolveConnections: time 0.0004436/0.01667, allocations: 258.7 kB / 0.659 GB, free: 31.37 MB / 0.5262 GB
Notification: Performance of NFEvalConstants.evaluate: time 0.001072/0.01774, allocations: 0.9122 MB / 0.6599 GB, free: 30.93 MB / 0.5262 GB
Notification: Performance of NFSimplifyModel.simplify: time 0.0006973/0.01844, allocations: 0.5317 MB / 0.6604 GB, free: 30.73 MB / 0.5262 GB
Notification: Performance of NFPackage.collectConstants: time 0.0002417/0.01868, allocations: 168 kB / 0.6605 GB, free: 30.73 MB / 0.5262 GB
Notification: Performance of NFFlatten.collectFunctions: time 0.0005886/0.01927, allocations: 317.8 kB / 0.6609 GB, free: 30.67 MB / 0.5262 GB
Notification: Performance of NFScalarize.scalarize: time 0.0002587/0.01952, allocations: 364.6 kB / 0.6612 GB, free: 30.44 MB / 0.5262 GB
Notification: Performance of NFVerifyModel.verify: time 0.0006338/0.02016, allocations: 0.5215 MB / 0.6617 GB, free: 30.18 MB / 0.5262 GB
Notification: Performance of NFConvertDAE.convert: time 0.002231/0.02239, allocations: 2.208 MB / 0.6639 GB, free: 29.23 MB / 0.5262 GB
Notification: Performance of FrontEnd - DAE generated: time 4.799e-06/0.02239, allocations: 1.5 kB / 0.6639 GB, free: 29.23 MB / 0.5262 GB
Notification: Performance of FrontEnd: time 1.413e-06/0.0224, allocations: 0 / 0.6639 GB, free: 29.23 MB / 0.5262 GB
Notification: Performance of Transformations before backend: time 3.753e-05/0.02243, allocations: 0 / 0.6639 GB, free: 29.23 MB / 0.5262 GB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 233
 * Number of variables: 233
Notification: Performance of Generate backend data structure: time 0.003456/0.02589, allocations: 2.473 MB / 0.6663 GB, free: 27.31 MB / 0.5262 GB
Notification: Performance of prepare preOptimizeDAE: time 4.444e-05/0.02593, allocations: 8.531 kB / 0.6663 GB, free: 27.31 MB / 0.5262 GB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.001127/0.02706, allocations: 0.5165 MB / 0.6668 GB, free: 27.11 MB / 0.5262 GB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.001026/0.02809, allocations: 0.7088 MB / 0.6675 GB, free: 26.59 MB / 0.5262 GB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 6.855e-05/0.02816, allocations: 72.94 kB / 0.6676 GB, free: 26.55 MB / 0.5262 GB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.0001757/0.02833, allocations: 110.8 kB / 0.6677 GB, free: 26.52 MB / 0.5262 GB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.002243/0.03057, allocations: 1.626 MB / 0.6692 GB, free: 25.5 MB / 0.5262 GB
Notification: Performance of preOpt findStateOrder (simulation): time 5.463e-05/0.03063, allocations: 13.59 kB / 0.6693 GB, free: 25.5 MB / 0.5262 GB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 9.654e-05/0.03072, allocations: 43.19 kB / 0.6693 GB, free: 25.47 MB / 0.5262 GB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 2.566e-05/0.03075, allocations: 19.81 kB / 0.6693 GB, free: 25.47 MB / 0.5262 GB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.001964/0.03271, allocations: 1.318 MB / 0.6706 GB, free: 24.69 MB / 0.5262 GB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.004683/0.0374, allocations: 3.259 MB / 0.6738 GB, free: 22.67 MB / 0.5262 GB
Notification: Performance of preOpt comSubExp (simulation): time 0.002366/0.03976, allocations: 1.548 MB / 0.6753 GB, free: 21.64 MB / 0.5262 GB
Notification: Performance of preOpt resolveLoops (simulation): time 0.001111/0.04087, allocations: 0.9909 MB / 0.6763 GB, free: 20.89 MB / 0.5262 GB
Notification: Performance of preOpt evalFunc (simulation): time 7.192e-05/0.04095, allocations: 24.81 kB / 0.6763 GB, free: 20.89 MB / 0.5262 GB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.001986/0.04293, allocations: 1.947 MB / 0.6782 GB, free: 19.42 MB / 0.5262 GB
Notification: Performance of pre-optimization done (n=157): time 3.356e-06/0.04294, allocations: 1.594 kB / 0.6782 GB, free: 19.42 MB / 0.5262 GB
Notification: Performance of matching and sorting (n=165): time 0.009924/0.05286, allocations: 7.386 MB / 0.6854 GB, free: 14.23 MB / 0.5262 GB
Notification: Performance of inlineWhenForInitialization (initialization): time 0.0002705/0.05313, allocations: 1.036 MB / 0.6864 GB, free: 13.01 MB / 0.5262 GB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.001696/0.05483, allocations: 1.239 MB / 0.6876 GB, free: 12.42 MB / 0.5262 GB
Notification: Performance of collectPreVariables (initialization): time 0.000141/0.05497, allocations: 75.92 kB / 0.6877 GB, free: 12.36 MB / 0.5262 GB
Notification: Performance of collectInitialEqns (initialization): time 0.0005113/0.05548, allocations: 0.6448 MB / 0.6883 GB, free: 11.88 MB / 0.5262 GB
Notification: Performance of collectInitialBindings (initialization): time 0.0004729/0.05595, allocations: 0.607 MB / 0.6889 GB, free: 11.41 MB / 0.5262 GB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.0006032/0.05655, allocations: 384 kB / 0.6893 GB, free: 11.23 MB / 0.5262 GB
Notification: Performance of setup shared object (initialization): time 7.83e-05/0.05663, allocations: 486.6 kB / 0.6898 GB, free: 10.75 MB / 0.5262 GB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.001461/0.05809, allocations: 1.248 MB / 0.691 GB, free: 9.836 MB / 0.5262 GB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.001666/0.05976, allocations: 1.774 MB / 0.6927 GB, free: 8.234 MB / 0.5262 GB
Notification: Performance of analyzeInitialSystem (initialization): time 0.00364/0.0634, allocations: 3.757 MB / 0.6964 GB, free: 4.523 MB / 0.5262 GB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 1.534e-05/0.06341, allocations: 4 kB / 0.6964 GB, free: 4.52 MB / 0.5262 GB
Notification: Performance of matching and sorting (n=229) (initialization): time 0.003988/0.0674, allocations: 3.321 MB / 0.6996 GB, free: 1.07 MB / 0.5262 GB
Notification: Performance of prepare postOptimizeDAE: time 0.000175/0.06758, allocations: 0.5644 MB / 0.7002 GB, free: 392 kB / 0.5262 GB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 2.08e-05/0.0676, allocations: 8 kB / 0.7002 GB, free: 384 kB / 0.5262 GB
Notification: Performance of postOpt tearingSystem (initialization): time 4.151e-05/0.06764, allocations: 20 kB / 0.7002 GB, free: 364 kB / 0.5262 GB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.001067/0.06871, allocations: 340 kB / 0.7005 GB, free: 24 kB / 0.5262 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 2.163e-05/0.06873, allocations: 23.94 kB / 0.7006 GB, free: 0 / 0.5262 GB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.001159/0.06989, allocations: 80.05 kB / 0.7006 GB, free: 15.92 MB / 0.5418 GB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.0003696/0.07026, allocations: 247.4 kB / 0.7009 GB, free: 15.68 MB / 0.5418 GB
Warning: Assuming fixed start value for the following 40 variables:
         patient4.dose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         patient4.dose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         patient4.dose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         patient4.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         patient_citalopram_CYP2C19_2.dose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         patient_citalopram_CYP2C19_2.dose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         patient_citalopram_CYP2C19_2.dose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         patient_citalopram_CYP2C19_2.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         patient2.dose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         patient2.dose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         patient2.dose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         patient2.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         patient_citalopram_normal.dose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         patient_citalopram_normal.dose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         patient_citalopram_normal.dose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         patient_citalopram_normal.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         patient_citalopram_normal.dose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         patient_citalopram_normal.dose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         patient_citalopram_normal.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         patient_citalopram_normal.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         patient2.dose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         patient2.dose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         patient2.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         patient2.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         patient_citalopram_CYP2C19_2.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         patient_citalopram_CYP2C19_2.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         patient4.dose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         patient4.dose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         patient4.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         patient4.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         patient_citalopram_normal.central.rising:DISCRETE(fixed = true protected = true )  type: Boolean
         patient_citalopram_normal.dose.absorptionLumen.rising:DISCRETE(fixed = true protected = true )  type: Boolean
         patient2.central.rising:DISCRETE(fixed = true protected = true )  type: Boolean
         patient2.dose.absorptionLumen.rising:DISCRETE(fixed = true protected = true )  type: Boolean
         patient_citalopram_CYP2C19_2.central.rising:DISCRETE(fixed = true protected = true )  type: Boolean
         patient_citalopram_CYP2C19_2.dose.absorptionLumen.rising:DISCRETE(fixed = true protected = true )  type: Boolean
         patient4.central.rising:DISCRETE(fixed = true protected = true )  type: Boolean
         patient4.dose.absorptionLumen.rising:DISCRETE(fixed = true protected = true )  type: Boolean
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 41
 * Number of states: 0 ()
 * Number of discrete variables: 92 ($PRE.patient_citalopram_normal.dose.absorptionLumen.Cmin,patient_citalopram_normal.dose.absorptionLumen.Cmin,$PRE.patient_citalopram_normal.dose.absorptionLumen.Cmax,patient_citalopram_normal.dose.absorptionLumen.Cmax,$PRE.patient_citalopram_normal.central.Cmin,patient_citalopram_normal.central.Cmin,$PRE.patient_citalopram_normal.central.Cmax,patient_citalopram_normal.central.Cmax,$PRE.patient2.dose.absorptionLumen.Cmin,patient2.dose.absorptionLumen.Cmin,$PRE.patient2.dose.absorptionLumen.Cmax,patient2.dose.absorptionLumen.Cmax,$PRE.patient2.central.Cmin,patient2.central.Cmin,$PRE.patient2.central.Cmax,patient2.central.Cmax,$PRE.patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmin,patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmin,$PRE.patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmax,patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmax,$PRE.patient_citalopram_CYP2C19_2.central.Cmin,patient_citalopram_CYP2C19_2.central.Cmin,$PRE.patient_citalopram_CYP2C19_2.central.Cmax,patient_citalopram_CYP2C19_2.central.Cmax,$PRE.patient4.dose.absorptionLumen.Cmin,patient4.dose.absorptionLumen.Cmin,$PRE.patient4.dose.absorptionLumen.Cmax,patient4.dose.absorptionLumen.Cmax,$PRE.patient4.central.Cmin,patient4.central.Cmin,$PRE.patient4.central.Cmax,patient4.central.Cmax,$PRE.patient_citalopram_normal.central.rising,$PRE.patient_citalopram_normal.dose.pulse.count,$PRE.patient_citalopram_normal.dose.pulse.T_start,$PRE.patient_citalopram_normal.dose.absorptionLumen.rising,patient_citalopram_normal.CYP2C19.status,patient_citalopram_normal.SLC22A2.status,patient_citalopram_normal.central.rising,patient_citalopram_normal.dose.pulse.count,patient_citalopram_normal.dose.pulse.T_start,patient_citalopram_normal.dose.absorptionLumen.rising,$whenCondition20,$whenCondition19,$whenCondition18,$whenCondition17,$whenCondition16,$PRE.patient2.central.rising,$PRE.patient2.dose.pulse.count,$PRE.patient2.dose.pulse.T_start,$PRE.patient2.dose.absorptionLumen.rising,patient2.CYP2C19.status,patient2.SLC22A2.status,patient2.central.rising,patient2.dose.pulse.count,patient2.dose.pulse.T_start,patient2.dose.absorptionLumen.rising,$whenCondition15,$whenCondition14,$whenCondition13,$whenCondition12,$whenCondition11,$PRE.patient_citalopram_CYP2C19_2.central.rising,$PRE.patient_citalopram_CYP2C19_2.dose.pulse.count,$PRE.patient_citalopram_CYP2C19_2.dose.pulse.T_start,$PRE.patient_citalopram_CYP2C19_2.dose.absorptionLumen.rising,patient_citalopram_CYP2C19_2.CYP2C19.status,patient_citalopram_CYP2C19_2.SLC22A2.status,patient_citalopram_CYP2C19_2.central.rising,patient_citalopram_CYP2C19_2.dose.pulse.count,patient_citalopram_CYP2C19_2.dose.pulse.T_start,patient_citalopram_CYP2C19_2.dose.absorptionLumen.rising,$whenCondition10,$whenCondition9,$whenCondition8,$whenCondition7,$whenCondition6,$PRE.patient4.central.rising,$PRE.patient4.dose.pulse.count,$PRE.patient4.dose.pulse.T_start,$PRE.patient4.dose.absorptionLumen.rising,patient4.CYP2C19.status,patient4.SLC22A2.status,patient4.central.rising,patient4.dose.pulse.count,patient4.dose.pulse.T_start,patient4.dose.absorptionLumen.rising,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1)
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (209):
 * Single equations (assignments): 189
 * Array equations: 0
 * Algorithm blocks: 20
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of prepare postOptimizeDAE: time 0.001701/0.07196, allocations: 1.035 MB / 0.7019 GB, free: 14.56 MB / 0.5418 GB
Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0009535/0.07291, allocations: 450.8 kB / 0.7023 GB, free: 14.12 MB / 0.5418 GB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0003755/0.07329, allocations: 137.6 kB / 0.7024 GB, free: 13.98 MB / 0.5418 GB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 1.521e-05/0.0733, allocations: 12 kB / 0.7024 GB, free: 13.97 MB / 0.5418 GB
Notification: Performance of postOpt constantLinearSystem (simulation): time 2.721e-05/0.07333, allocations: 4 kB / 0.7025 GB, free: 13.97 MB / 0.5418 GB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 1.545e-05/0.07335, allocations: 3.984 kB / 0.7025 GB, free: 13.96 MB / 0.5418 GB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.007832/0.08118, allocations: 4.714 MB / 0.7071 GB, free: 9.02 MB / 0.5418 GB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 6.802e-06/0.08118, allocations: 4 kB / 0.7071 GB, free: 9.016 MB / 0.5418 GB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.001167/0.08235, allocations: 235.7 kB / 0.7073 GB, free: 8.785 MB / 0.5418 GB
Notification: Performance of postOpt tearingSystem (simulation): time 1.219e-05/0.08236, allocations: 4 kB / 0.7073 GB, free: 8.781 MB / 0.5418 GB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 0.0001481/0.08251, allocations: 59.97 kB / 0.7073 GB, free: 8.723 MB / 0.5418 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 1.43e-05/0.08253, allocations: 11.98 kB / 0.7074 GB, free: 8.711 MB / 0.5418 GB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 2.715e-06/0.08253, allocations: 0 / 0.7074 GB, free: 8.711 MB / 0.5418 GB
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.007307/0.08984, allocations: 4.816 MB / 0.7121 GB, free: 3.578 MB / 0.5418 GB
Notification: Performance of postOpt removeConstants (simulation): time 0.001002/0.09084, allocations: 318.9 kB / 0.7124 GB, free: 3.266 MB / 0.5418 GB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0002946/0.09113, allocations: 68 kB / 0.7124 GB, free: 3.199 MB / 0.5418 GB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0007428/0.09187, allocations: 59.97 kB / 0.7125 GB, free: 3.141 MB / 0.5418 GB
Notification: Performance of postOpt findZeroCrossings (simulation): time 0.00045/0.09232, allocations: 171.7 kB / 0.7127 GB, free: 2.973 MB / 0.5418 GB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 0.0003872/0.09271, allocations: 234.8 kB / 0.7129 GB, free: 2.746 MB / 0.5418 GB
Notification: Performance of sorting global known variables: time 0.001383/0.09409, allocations: 0.6845 MB / 0.7135 GB, free: 2.051 MB / 0.5418 GB
Notification: Performance of sort global known variables: time 8.1e-08/0.09409, allocations: 4 kB / 0.7135 GB, free: 2.047 MB / 0.5418 GB
Notification: Performance of remove unused functions: time 0.001777/0.09587, allocations: 383.9 kB / 0.7139 GB, free: 1.672 MB / 0.5418 GB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 5
 * Number of states: 28 (patient4.dose.TotalCumulativeMass,patient4.dose.absorptionLumen.C,patient4.dose.absorptionLumen.AUC,patient4.dose.variableDose.TotalCumulativeMass,patient4.central.C,patient4.central.AUC,patient4.elim.MExc,patient_citalopram_CYP2C19_2.dose.TotalCumulativeMass,patient_citalopram_CYP2C19_2.dose.absorptionLumen.C,patient_citalopram_CYP2C19_2.dose.absorptionLumen.AUC,patient_citalopram_CYP2C19_2.dose.variableDose.TotalCumulativeMass,patient_citalopram_CYP2C19_2.central.C,patient_citalopram_CYP2C19_2.central.AUC,patient_citalopram_CYP2C19_2.elim.MExc,patient2.dose.TotalCumulativeMass,patient2.dose.absorptionLumen.C,patient2.dose.absorptionLumen.AUC,patient2.dose.variableDose.TotalCumulativeMass,patient2.central.C,patient2.central.AUC,patient2.elim.MExc,patient_citalopram_normal.dose.TotalCumulativeMass,patient_citalopram_normal.dose.absorptionLumen.C,patient_citalopram_normal.dose.absorptionLumen.AUC,patient_citalopram_normal.dose.variableDose.TotalCumulativeMass,patient_citalopram_normal.central.C,patient_citalopram_normal.central.AUC,patient_citalopram_normal.elim.MExc)
 * Number of discrete variables: 60 ($whenCondition1,$whenCondition2,$whenCondition3,$whenCondition4,$whenCondition5,patient4.dose.absorptionLumen.Cmax,patient4.dose.absorptionLumen.Cmin,patient4.dose.absorptionLumen.rising,patient4.dose.pulse.T_start,patient4.dose.pulse.count,patient4.central.Cmax,patient4.central.Cmin,patient4.central.rising,patient4.SLC22A2.status,patient4.CYP2C19.status,$whenCondition6,$whenCondition7,$whenCondition8,$whenCondition9,$whenCondition10,patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmax,patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmin,patient_citalopram_CYP2C19_2.dose.absorptionLumen.rising,patient_citalopram_CYP2C19_2.dose.pulse.T_start,patient_citalopram_CYP2C19_2.dose.pulse.count,patient_citalopram_CYP2C19_2.central.Cmax,patient_citalopram_CYP2C19_2.central.Cmin,patient_citalopram_CYP2C19_2.central.rising,patient_citalopram_CYP2C19_2.SLC22A2.status,patient_citalopram_CYP2C19_2.CYP2C19.status,$whenCondition11,$whenCondition12,$whenCondition13,$whenCondition14,$whenCondition15,patient2.dose.absorptionLumen.Cmax,patient2.dose.absorptionLumen.Cmin,patient2.dose.absorptionLumen.rising,patient2.dose.pulse.T_start,patient2.dose.pulse.count,patient2.central.Cmax,patient2.central.Cmin,patient2.central.rising,patient2.SLC22A2.status,patient2.CYP2C19.status,$whenCondition16,$whenCondition17,$whenCondition18,$whenCondition19,$whenCondition20,patient_citalopram_normal.dose.absorptionLumen.Cmax,patient_citalopram_normal.dose.absorptionLumen.Cmin,patient_citalopram_normal.dose.absorptionLumen.rising,patient_citalopram_normal.dose.pulse.T_start,patient_citalopram_normal.dose.pulse.count,patient_citalopram_normal.central.Cmax,patient_citalopram_normal.central.Cmin,patient_citalopram_normal.central.rising,patient_citalopram_normal.SLC22A2.status,patient_citalopram_normal.CYP2C19.status)
 * Number of discrete states: 52 (patient_citalopram_normal.dose.pulse.count,patient_citalopram_normal.SLC22A2.status,patient_citalopram_normal.CYP2C19.status,patient_citalopram_normal.dose.absorptionLumen.Cmin,$whenCondition20,patient_citalopram_normal.dose.absorptionLumen.Cmax,$whenCondition19,patient_citalopram_normal.dose.absorptionLumen.rising,patient_citalopram_normal.central.Cmin,$whenCondition18,patient_citalopram_normal.central.Cmax,$whenCondition17,patient_citalopram_normal.central.rising,patient2.dose.pulse.count,patient2.SLC22A2.status,patient2.CYP2C19.status,patient2.dose.absorptionLumen.Cmin,$whenCondition15,patient2.dose.absorptionLumen.Cmax,$whenCondition14,patient2.dose.absorptionLumen.rising,patient2.central.Cmin,$whenCondition13,patient2.central.Cmax,$whenCondition12,patient2.central.rising,patient_citalopram_CYP2C19_2.dose.pulse.count,patient_citalopram_CYP2C19_2.SLC22A2.status,patient_citalopram_CYP2C19_2.CYP2C19.status,patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmin,$whenCondition10,patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmax,$whenCondition9,patient_citalopram_CYP2C19_2.dose.absorptionLumen.rising,patient_citalopram_CYP2C19_2.central.Cmin,$whenCondition8,patient_citalopram_CYP2C19_2.central.Cmax,$whenCondition7,patient_citalopram_CYP2C19_2.central.rising,patient4.dose.pulse.count,patient4.SLC22A2.status,patient4.CYP2C19.status,patient4.dose.absorptionLumen.Cmin,$whenCondition5,patient4.dose.absorptionLumen.Cmax,$whenCondition4,patient4.dose.absorptionLumen.rising,patient4.central.Cmin,$whenCondition3,patient4.central.Cmax,$whenCondition2,patient4.central.rising)
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (133):
 * Single equations (assignments): 109
 * Array equations: 0
 * Algorithm blocks: 16
 * Record equations: 0
 * When equations: 8
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of Backend phase and start with SimCode phase: time 0.0006212/0.09649, allocations: 278 kB / 0.7142 GB, free: 1.402 MB / 0.5418 GB
Notification: Performance of simCode: created initialization part: time 0.005918/0.1024, allocations: 3.784 MB / 0.7179 GB, free: 13.16 MB / 0.5574 GB
Notification: Performance of simCode: created event and clocks part: time 5.38e-06/0.1024, allocations: 0 / 0.7179 GB, free: 13.16 MB / 0.5574 GB
Notification: Performance of simCode: created simulation system equations: time 0.00289/0.1053, allocations: 2.195 MB / 0.72 GB, free: 10.66 MB / 0.5574 GB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.002374/0.1077, allocations: 401.6 kB / 0.7204 GB, free: 10.31 MB / 0.5574 GB
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.007548/0.1152, allocations: 4.12 MB / 0.7244 GB, free: 6.137 MB / 0.5574 GB
Notification: Performance of simCode: some other stuff during SimCode phase: time 0.001181/0.1164, allocations: 0.6449 MB / 0.7251 GB, free: 5.453 MB / 0.5574 GB
Notification: Performance of simCode: alias equations: time 0.000736/0.1171, allocations: 107.5 kB / 0.7252 GB, free: 5.348 MB / 0.5574 GB
Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0002713/0.1174, allocations: 92.48 kB / 0.7252 GB, free: 5.258 MB / 0.5574 GB
Notification: Performance of SimCode: time 1.773e-06/0.1174, allocations: 0 / 0.7252 GB, free: 5.258 MB / 0.5574 GB
Notification: Performance of Templates: time 0.04608/0.1635, allocations: 22.56 MB / 0.7473 GB, free: 15.84 MB / 0.5887 GB
"
[Timeout remaining time 660]
make -j1 -f Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.makefile [Timeout 660]
(rm -f Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.sim & ./Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment -abortSlowSimulation -alarm=240  -lv LOG_STATS > Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 12.765185171971098]