Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.00196/0.00196, allocations: 85.48 kB / 19.44 MB, free: 340 kB / 13.93 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.002072/0.002072, allocations: 177.2 kB / 22.76 MB, free: 1.656 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.534/1.534, allocations: 177.1 MB / 203.1 MB, free: 5.613 MB / 186.7 MB " [Timeout remaining time 178] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180] "[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory. Missing names are: Paracetamol_Experiment Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 3.385/3.385, allocations: 274.5 MB / 0.5215 GB, free: 14.16 MB / 458.7 MB " [Timeout remaining time 176] Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: translateModel(Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI,tolerance=1e-09,outputFormat="empty",numberOfIntervals=86400,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI") translateModel(Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI,tolerance=1e-09,outputFormat="empty",numberOfIntervals=86400,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI") [Timeout 660] "Notification: Performance of FrontEnd - loaded program: time 1.984e-06/1.984e-06, allocations: 0 / 0.6472 GB, free: 39.11 MB / 0.5262 GB Notification: Performance of FrontEnd - Absyn->SCode: time 2.069e-05/2.267e-05, allocations: 2.312 kB / 0.6472 GB, free: 39.1 MB / 0.5262 GB Notification: Performance of NFInst.instantiate(Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI): time 0.006023/0.006046, allocations: 6.81 MB / 0.6539 GB, free: 34.59 MB / 0.5262 GB Notification: Performance of NFInst.instExpressions: time 0.00198/0.008025, allocations: 1.292 MB / 0.6551 GB, free: 33.69 MB / 0.5262 GB Notification: Performance of NFInst.updateImplicitVariability: time 0.0002605/0.008286, allocations: 11.94 kB / 0.6551 GB, free: 33.68 MB / 0.5262 GB Notification: Performance of NFTyping.typeComponents: time 0.0002287/0.008514, allocations: 113.3 kB / 0.6552 GB, free: 33.62 MB / 0.5262 GB Notification: Performance of NFTyping.typeBindings: time 0.0005254/0.00904, allocations: 340.2 kB / 0.6556 GB, free: 33.37 MB / 0.5262 GB Notification: Performance of NFTyping.typeClassSections: time 0.0004686/0.009508, allocations: 291.4 kB / 0.6558 GB, free: 33.18 MB / 0.5262 GB Notification: Performance of NFFlatten.flatten: time 0.001101/0.01061, allocations: 1.22 MB / 0.657 GB, free: 32.48 MB / 0.5262 GB Notification: Performance of NFFlatten.resolveConnections: time 0.0002996/0.01091, allocations: 174.8 kB / 0.6572 GB, free: 32.38 MB / 0.5262 GB Notification: Performance of NFEvalConstants.evaluate: time 0.0006105/0.01152, allocations: 0.6239 MB / 0.6578 GB, free: 32.09 MB / 0.5262 GB Notification: Performance of NFSimplifyModel.simplify: time 0.0004937/0.01201, allocations: 366.1 kB / 0.6582 GB, free: 31.96 MB / 0.5262 GB Notification: Performance of NFPackage.collectConstants: time 0.0001305/0.01214, allocations: 108.8 kB / 0.6583 GB, free: 31.96 MB / 0.5262 GB Notification: Performance of NFFlatten.collectFunctions: time 0.0001719/0.01232, allocations: 111.4 kB / 0.6584 GB, free: 31.96 MB / 0.5262 GB Notification: Performance of NFScalarize.scalarize: time 0.000131/0.01245, allocations: 200.6 kB / 0.6586 GB, free: 31.81 MB / 0.5262 GB Notification: Performance of NFVerifyModel.verify: time 0.0003635/0.01281, allocations: 359.3 kB / 0.6589 GB, free: 31.64 MB / 0.5262 GB Notification: Performance of NFConvertDAE.convert: time 0.0009567/0.01377, allocations: 1.181 MB / 0.6601 GB, free: 31.13 MB / 0.5262 GB Notification: Performance of FrontEnd - DAE generated: time 4.478e-06/0.01377, allocations: 0 / 0.6601 GB, free: 31.13 MB / 0.5262 GB Notification: Performance of FrontEnd: time 1.363e-06/0.01377, allocations: 1.281 kB / 0.6601 GB, free: 31.13 MB / 0.5262 GB Notification: Performance of Transformations before backend: time 1.377e-05/0.01379, allocations: 0 / 0.6601 GB, free: 31.13 MB / 0.5262 GB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 144 * Number of variables: 144 Notification: Performance of Generate backend data structure: time 0.001949/0.01574, allocations: 1.496 MB / 0.6615 GB, free: 29.98 MB / 0.5262 GB Notification: Performance of prepare preOptimizeDAE: time 3.74e-05/0.01577, allocations: 8.344 kB / 0.6615 GB, free: 29.98 MB / 0.5262 GB Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0002151/0.01599, allocations: 145.2 kB / 0.6617 GB, free: 29.91 MB / 0.5262 GB Notification: Performance of preOpt evaluateParameters (simulation): time 0.0005637/0.01655, allocations: 466.6 kB / 0.6621 GB, free: 29.56 MB / 0.5262 GB Notification: Performance of preOpt simplifyIfEquations (simulation): time 3.886e-05/0.01659, allocations: 42.53 kB / 0.6622 GB, free: 29.54 MB / 0.5262 GB Notification: Performance of preOpt expandDerOperator (simulation): time 0.0001093/0.0167, allocations: 72 kB / 0.6622 GB, free: 29.52 MB / 0.5262 GB Notification: Performance of preOpt clockPartitioning (simulation): time 0.001164/0.01786, allocations: 0.8959 MB / 0.6631 GB, free: 28.98 MB / 0.5262 GB Notification: Performance of preOpt findStateOrder (simulation): time 3.941e-05/0.0179, allocations: 14.94 kB / 0.6631 GB, free: 28.98 MB / 0.5262 GB Notification: Performance of preOpt replaceEdgeChange (simulation): time 5.59e-05/0.01796, allocations: 23.06 kB / 0.6631 GB, free: 28.96 MB / 0.5262 GB Notification: Performance of preOpt inlineArrayEqn (simulation): time 1.42e-05/0.01797, allocations: 18.06 kB / 0.6632 GB, free: 28.96 MB / 0.5262 GB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.001087/0.01906, allocations: 0.7042 MB / 0.6638 GB, free: 28.6 MB / 0.5262 GB Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.002388/0.02145, allocations: 2.287 MB / 0.6661 GB, free: 26.99 MB / 0.5262 GB Notification: Performance of preOpt comSubExp (simulation): time 0.001334/0.02278, allocations: 0.8329 MB / 0.6669 GB, free: 26.49 MB / 0.5262 GB Notification: Performance of preOpt resolveLoops (simulation): time 0.0005756/0.02336, allocations: 485.9 kB / 0.6674 GB, free: 26.17 MB / 0.5262 GB Notification: Performance of preOpt evalFunc (simulation): time 6.176e-05/0.02342, allocations: 15.34 kB / 0.6674 GB, free: 26.17 MB / 0.5262 GB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.001051/0.02447, allocations: 1.165 MB / 0.6685 GB, free: 25.31 MB / 0.5262 GB Notification: Performance of pre-optimization done (n=99): time 2.485e-06/0.02447, allocations: 3.938 kB / 0.6685 GB, free: 25.3 MB / 0.5262 GB Notification: Performance of matching and sorting (n=105): time 0.004858/0.02933, allocations: 3.573 MB / 0.672 GB, free: 22.95 MB / 0.5262 GB Notification: Performance of inlineWhenForInitialization (initialization): time 0.0001367/0.02947, allocations: 0.5928 MB / 0.6726 GB, free: 22.25 MB / 0.5262 GB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0006444/0.03011, allocations: 0.7103 MB / 0.6733 GB, free: 21.88 MB / 0.5262 GB Notification: Performance of collectPreVariables (initialization): time 6.508e-05/0.03018, allocations: 58.92 kB / 0.6733 GB, free: 21.82 MB / 0.5262 GB Notification: Performance of collectInitialEqns (initialization): time 0.0001982/0.03038, allocations: 386.2 kB / 0.6737 GB, free: 21.52 MB / 0.5262 GB Notification: Performance of collectInitialBindings (initialization): time 0.000225/0.0306, allocations: 409.1 kB / 0.6741 GB, free: 21.21 MB / 0.5262 GB Notification: Performance of simplifyInitialFunctions (initialization): time 0.000306/0.03091, allocations: 257.5 kB / 0.6743 GB, free: 21.08 MB / 0.5262 GB Notification: Performance of setup shared object (initialization): time 0.0001906/0.0311, allocations: 0.6464 MB / 0.675 GB, free: 20.51 MB / 0.5262 GB Notification: Performance of preBalanceInitialSystem (initialization): time 0.0007999/0.0319, allocations: 0.6805 MB / 0.6756 GB, free: 20.05 MB / 0.5262 GB Notification: Performance of partitionIndependentBlocks (initialization): time 0.0008969/0.03279, allocations: 1.109 MB / 0.6767 GB, free: 19.02 MB / 0.5262 GB Notification: Performance of analyzeInitialSystem (initialization): time 0.002051/0.03484, allocations: 2.088 MB / 0.6787 GB, free: 17.3 MB / 0.5262 GB Notification: Performance of solveInitialSystemEqSystem (initialization): time 8.656e-06/0.03485, allocations: 3.094 kB / 0.6788 GB, free: 17.3 MB / 0.5262 GB Notification: Performance of matching and sorting (n=159) (initialization): time 0.002192/0.03705, allocations: 1.769 MB / 0.6805 GB, free: 16.21 MB / 0.5262 GB Notification: Performance of prepare postOptimizeDAE: time 8.447e-05/0.03713, allocations: 262.5 kB / 0.6807 GB, free: 15.92 MB / 0.5262 GB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 1.406e-05/0.03714, allocations: 12.34 kB / 0.6807 GB, free: 15.92 MB / 0.5262 GB Notification: Performance of postOpt tearingSystem (initialization): time 3.048e-05/0.03717, allocations: 15.67 kB / 0.6808 GB, free: 15.92 MB / 0.5262 GB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0008492/0.03802, allocations: 257.4 kB / 0.681 GB, free: 15.89 MB / 0.5262 GB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 2.266e-05/0.03805, allocations: 20.56 kB / 0.681 GB, free: 15.89 MB / 0.5262 GB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0006452/0.03869, allocations: 53.06 kB / 0.6811 GB, free: 15.87 MB / 0.5262 GB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 7.56e-05/0.03877, allocations: 52.25 kB / 0.6811 GB, free: 15.86 MB / 0.5262 GB Warning: Assuming fixed start value for the following 30 variables: pK_lower.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real pK_lower.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real pK_lower.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real pK_lower.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real pK_1C_Lithium_upper.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real pK_1C_Lithium_upper.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real pK_1C_Lithium_upper.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real pK_1C_Lithium_upper.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real pK_1C_Lithium.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real pK_1C_Lithium.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real pK_1C_Lithium.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real pK_1C_Lithium.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real pK_1C_Lithium.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium_upper.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium_upper.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_lower.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_lower.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_lower.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_lower.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean pK_1C_Lithium.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean pK_1C_Lithium_upper.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean pK_lower.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean pK_lower.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 36 * Number of states: 0 () * Number of discrete variables: 63 ($PRE.pK_1C_Lithium.central.Cmin,pK_1C_Lithium.central.Cmin,$PRE.pK_1C_Lithium.central.Cmax,pK_1C_Lithium.central.Cmax,$PRE.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,$PRE.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,$PRE.pK_1C_Lithium_upper.central.Cmin,pK_1C_Lithium_upper.central.Cmin,$PRE.pK_1C_Lithium_upper.central.Cmax,pK_1C_Lithium_upper.central.Cmax,$PRE.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,$PRE.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,$PRE.pK_lower.central.Cmin,pK_lower.central.Cmin,$PRE.pK_lower.central.Cmax,pK_lower.central.Cmax,$PRE.pK_lower.periodicDose.absorptionLumen.Cmin,pK_lower.periodicDose.absorptionLumen.Cmin,$PRE.pK_lower.periodicDose.absorptionLumen.Cmax,pK_lower.periodicDose.absorptionLumen.Cmax,$PRE.pK_1C_Lithium.periodicDose.pulse.count,$PRE.pK_1C_Lithium.periodicDose.pulse.T_start,$PRE.pK_1C_Lithium.periodicDose.absorptionLumen.rising,$PRE.pK_1C_Lithium.central.rising,pK_1C_Lithium.periodicDose.pulse.count,pK_1C_Lithium.periodicDose.pulse.T_start,pK_1C_Lithium.periodicDose.absorptionLumen.rising,pK_1C_Lithium.central.rising,$whenCondition15,$whenCondition14,$whenCondition13,$whenCondition12,$whenCondition11,$PRE.pK_1C_Lithium_upper.periodicDose.pulse.count,$PRE.pK_1C_Lithium_upper.periodicDose.pulse.T_start,$PRE.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,$PRE.pK_1C_Lithium_upper.central.rising,pK_1C_Lithium_upper.periodicDose.pulse.count,pK_1C_Lithium_upper.periodicDose.pulse.T_start,pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,pK_1C_Lithium_upper.central.rising,$whenCondition10,$whenCondition9,$whenCondition8,$whenCondition7,$whenCondition6,$PRE.pK_lower.periodicDose.pulse.count,$PRE.pK_lower.periodicDose.pulse.T_start,$PRE.pK_lower.periodicDose.absorptionLumen.rising,$PRE.pK_lower.central.rising,pK_lower.periodicDose.pulse.count,pK_lower.periodicDose.pulse.T_start,pK_lower.periodicDose.absorptionLumen.rising,pK_lower.central.rising,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1) * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (150): * Single equations (assignments): 141 * Array equations: 0 * Algorithm blocks: 9 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of prepare postOptimizeDAE: time 0.0006201/0.03939, allocations: 0.6322 MB / 0.6817 GB, free: 15.34 MB / 0.5262 GB Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0001755/0.03956, allocations: 129.3 kB / 0.6819 GB, free: 15.29 MB / 0.5262 GB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.000174/0.03974, allocations: 84.69 kB / 0.6819 GB, free: 15.22 MB / 0.5262 GB Notification: Performance of postOpt inlineArrayEqn (simulation): time 7.614e-06/0.03974, allocations: 9.844 kB / 0.682 GB, free: 15.22 MB / 0.5262 GB Notification: Performance of postOpt constantLinearSystem (simulation): time 1.549e-05/0.03976, allocations: 1.594 kB / 0.682 GB, free: 15.22 MB / 0.5262 GB Notification: Performance of postOpt simplifysemiLinear (simulation): time 1.16e-05/0.03977, allocations: 3.797 kB / 0.682 GB, free: 15.22 MB / 0.5262 GB Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.003257/0.04303, allocations: 2.603 MB / 0.6845 GB, free: 13.6 MB / 0.5262 GB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 4.158e-06/0.04303, allocations: 0 / 0.6845 GB, free: 13.6 MB / 0.5262 GB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0007719/0.0438, allocations: 168 kB / 0.6847 GB, free: 13.58 MB / 0.5262 GB Notification: Performance of postOpt tearingSystem (simulation): time 7.174e-06/0.04381, allocations: 4.562 kB / 0.6847 GB, free: 13.58 MB / 0.5262 GB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 7.426e-05/0.04389, allocations: 31.91 kB / 0.6847 GB, free: 13.57 MB / 0.5262 GB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 5.19e-06/0.04389, allocations: 3.688 kB / 0.6847 GB, free: 13.57 MB / 0.5262 GB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 3.306e-06/0.04389, allocations: 9.125 kB / 0.6847 GB, free: 13.56 MB / 0.5262 GB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.002855/0.04675, allocations: 2.446 MB / 0.6871 GB, free: 12.02 MB / 0.5262 GB Notification: Performance of postOpt removeConstants (simulation): time 0.0003736/0.04712, allocations: 165.6 kB / 0.6873 GB, free: 11.92 MB / 0.5262 GB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0001737/0.0473, allocations: 49.17 kB / 0.6873 GB, free: 11.89 MB / 0.5262 GB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0005076/0.0478, allocations: 39.34 kB / 0.6873 GB, free: 11.88 MB / 0.5262 GB Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0002333/0.04804, allocations: 112.5 kB / 0.6874 GB, free: 11.85 MB / 0.5262 GB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 6.798e-05/0.0481, allocations: 37.33 kB / 0.6875 GB, free: 11.84 MB / 0.5262 GB Notification: Performance of sorting global known variables: time 0.0005066/0.04861, allocations: 450.4 kB / 0.6879 GB, free: 11.61 MB / 0.5262 GB Notification: Performance of sort global known variables: time 9e-08/0.04861, allocations: 0 / 0.6879 GB, free: 11.61 MB / 0.5262 GB Notification: Performance of remove unused functions: time 0.0009473/0.04956, allocations: 246.4 kB / 0.6881 GB, free: 11.59 MB / 0.5262 GB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 3 * Number of states: 21 (pK_lower.central.C,pK_lower.central.AUC,pK_lower.elim.MExc,pK_lower.periodicDose.TotalCumulativeMass,pK_lower.periodicDose.absorptionLumen.C,pK_lower.periodicDose.absorptionLumen.AUC,pK_lower.periodicDose.variableDose.TotalCumulativeMass,pK_1C_Lithium_upper.central.C,pK_1C_Lithium_upper.central.AUC,pK_1C_Lithium_upper.elim.MExc,pK_1C_Lithium_upper.periodicDose.TotalCumulativeMass,pK_1C_Lithium_upper.periodicDose.absorptionLumen.C,pK_1C_Lithium_upper.periodicDose.absorptionLumen.AUC,pK_1C_Lithium_upper.periodicDose.variableDose.TotalCumulativeMass,pK_1C_Lithium.central.C,pK_1C_Lithium.central.AUC,pK_1C_Lithium.elim.MExc,pK_1C_Lithium.periodicDose.TotalCumulativeMass,pK_1C_Lithium.periodicDose.absorptionLumen.C,pK_1C_Lithium.periodicDose.absorptionLumen.AUC,pK_1C_Lithium.periodicDose.variableDose.TotalCumulativeMass) * Number of discrete variables: 39 ($whenCondition1,$whenCondition2,$whenCondition3,$whenCondition4,$whenCondition5,pK_lower.central.Cmax,pK_lower.central.Cmin,pK_lower.central.rising,pK_lower.periodicDose.absorptionLumen.Cmax,pK_lower.periodicDose.absorptionLumen.Cmin,pK_lower.periodicDose.absorptionLumen.rising,pK_lower.periodicDose.pulse.T_start,pK_lower.periodicDose.pulse.count,$whenCondition6,$whenCondition7,$whenCondition8,$whenCondition9,$whenCondition10,pK_1C_Lithium_upper.central.Cmax,pK_1C_Lithium_upper.central.Cmin,pK_1C_Lithium_upper.central.rising,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,pK_1C_Lithium_upper.periodicDose.pulse.T_start,pK_1C_Lithium_upper.periodicDose.pulse.count,$whenCondition11,$whenCondition12,$whenCondition13,$whenCondition14,$whenCondition15,pK_1C_Lithium.central.Cmax,pK_1C_Lithium.central.Cmin,pK_1C_Lithium.central.rising,pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,pK_1C_Lithium.periodicDose.absorptionLumen.rising,pK_1C_Lithium.periodicDose.pulse.T_start,pK_1C_Lithium.periodicDose.pulse.count) * Number of discrete states: 33 (pK_1C_Lithium.periodicDose.pulse.count,pK_1C_Lithium.central.Cmin,$whenCondition15,pK_1C_Lithium.central.Cmax,$whenCondition14,pK_1C_Lithium.central.rising,pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,$whenCondition13,pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,$whenCondition12,pK_1C_Lithium.periodicDose.absorptionLumen.rising,pK_1C_Lithium_upper.periodicDose.pulse.count,pK_1C_Lithium_upper.central.Cmin,$whenCondition10,pK_1C_Lithium_upper.central.Cmax,$whenCondition9,pK_1C_Lithium_upper.central.rising,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,$whenCondition8,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,$whenCondition7,pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,pK_lower.periodicDose.pulse.count,pK_lower.central.Cmin,$whenCondition5,pK_lower.central.Cmax,$whenCondition4,pK_lower.central.rising,pK_lower.periodicDose.absorptionLumen.Cmin,$whenCondition3,pK_lower.periodicDose.absorptionLumen.Cmax,$whenCondition2,pK_lower.periodicDose.absorptionLumen.rising) * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (87): * Single equations (assignments): 75 * Array equations: 0 * Algorithm blocks: 6 * Record equations: 0 * When equations: 6 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of Backend phase and start with SimCode phase: time 0.0002003/0.04976, allocations: 192.9 kB / 0.6883 GB, free: 11.45 MB / 0.5262 GB Notification: Performance of simCode: created initialization part: time 0.002121/0.05188, allocations: 1.925 MB / 0.6902 GB, free: 10.05 MB / 0.5262 GB Notification: Performance of simCode: created event and clocks part: time 3.196e-06/0.05188, allocations: 1.031 kB / 0.6902 GB, free: 10.05 MB / 0.5262 GB Notification: Performance of simCode: created simulation system equations: time 0.001046/0.05293, allocations: 1.011 MB / 0.6912 GB, free: 9.309 MB / 0.5262 GB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.001468/0.0544, allocations: 285.5 kB / 0.6915 GB, free: 9.23 MB / 0.5262 GB Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.003198/0.0576, allocations: 2.394 MB / 0.6938 GB, free: 7.129 MB / 0.5262 GB Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0003289/0.05792, allocations: 365.9 kB / 0.6942 GB, free: 6.836 MB / 0.5262 GB Notification: Performance of simCode: alias equations: time 0.0004378/0.05836, allocations: 86.42 kB / 0.6942 GB, free: 6.773 MB / 0.5262 GB Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0001781/0.05854, allocations: 74.75 kB / 0.6943 GB, free: 6.703 MB / 0.5262 GB Notification: Performance of SimCode: time 1.292e-06/0.05854, allocations: 4 kB / 0.6943 GB, free: 6.699 MB / 0.5262 GB Notification: Performance of Templates: time 0.02476/0.0833, allocations: 14.08 MB / 0.7081 GB, free: 10.06 MB / 0.5418 GB " [Timeout remaining time 660] make -j1 -f Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.makefile [Timeout 660] (rm -f Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.sim & ./Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI -abortSlowSimulation -alarm=240 -lv LOG_STATS > Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.pipe 2>&1) [Timeout 240] [Calling sys.exit(0), Time elapsed: 9.00067277008202]