Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.002151/0.002151, allocations: 81.5 kB / 19.44 MB, free: 344 kB / 13.93 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.002362/0.002362, allocations: 173.2 kB / 22.76 MB, free: 1.664 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.538/1.538, allocations: 177.1 MB / 203.1 MB, free: 5.621 MB / 186.7 MB " [Timeout remaining time 178] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180] "[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory. Missing names are: Paracetamol_Experiment Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 3.438/3.438, allocations: 274.5 MB / 0.5215 GB, free: 14.15 MB / 458.7 MB " [Timeout remaining time 176] Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: translateModel(Pharmacolibrary.Examples.PK_Lithium.PGx_experiment,tolerance=1e-06,outputFormat="empty",numberOfIntervals=500,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment") translateModel(Pharmacolibrary.Examples.PK_Lithium.PGx_experiment,tolerance=1e-06,outputFormat="empty",numberOfIntervals=500,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment") [Timeout 660] "Notification: Performance of FrontEnd - loaded program: time 1.853e-06/1.853e-06, allocations: 3.938 kB / 0.6472 GB, free: 39.05 MB / 0.5262 GB Notification: Performance of FrontEnd - Absyn->SCode: time 2.409e-05/2.594e-05, allocations: 7.531 kB / 0.6472 GB, free: 39.04 MB / 0.5262 GB Notification: Performance of NFInst.instantiate(Pharmacolibrary.Examples.PK_Lithium.PGx_experiment): time 0.01011/0.01014, allocations: 11.08 MB / 0.658 GB, free: 31.73 MB / 0.5262 GB Notification: Performance of NFInst.instExpressions: time 0.004628/0.01476, allocations: 2.249 MB / 0.6602 GB, free: 30.12 MB / 0.5262 GB Notification: Performance of NFInst.updateImplicitVariability: time 0.001072/0.01584, allocations: 17.94 kB / 0.6603 GB, free: 30.12 MB / 0.5262 GB Notification: Performance of NFTyping.typeComponents: time 0.0004659/0.0163, allocations: 232.8 kB / 0.6605 GB, free: 29.98 MB / 0.5262 GB Notification: Performance of NFTyping.typeBindings: time 0.00125/0.01755, allocations: 0.6821 MB / 0.6611 GB, free: 29.47 MB / 0.5262 GB Notification: Performance of NFTyping.typeClassSections: time 0.0009383/0.01849, allocations: 0.6372 MB / 0.6618 GB, free: 29.01 MB / 0.5262 GB Notification: Performance of NFFlatten.flatten: time 0.002237/0.02073, allocations: 2.67 MB / 0.6644 GB, free: 27.45 MB / 0.5262 GB Notification: Performance of NFFlatten.resolveConnections: time 0.0005706/0.0213, allocations: 369.4 kB / 0.6647 GB, free: 27.21 MB / 0.5262 GB Notification: Performance of NFEvalConstants.evaluate: time 0.001549/0.02285, allocations: 1.361 MB / 0.6661 GB, free: 26.52 MB / 0.5262 GB Notification: Performance of NFSimplifyModel.simplify: time 0.000992/0.02384, allocations: 0.7403 MB / 0.6668 GB, free: 26.23 MB / 0.5262 GB Notification: Performance of NFPackage.collectConstants: time 0.0003572/0.0242, allocations: 279.5 kB / 0.667 GB, free: 26.23 MB / 0.5262 GB Notification: Performance of NFFlatten.collectFunctions: time 0.0004026/0.0246, allocations: 282.2 kB / 0.6673 GB, free: 26.23 MB / 0.5262 GB Notification: Performance of NFScalarize.scalarize: time 0.0002281/0.02483, allocations: 444.2 kB / 0.6677 GB, free: 25.89 MB / 0.5262 GB Notification: Performance of NFVerifyModel.verify: time 0.000738/0.02556, allocations: 0.7655 MB / 0.6685 GB, free: 25.5 MB / 0.5262 GB Notification: Performance of NFConvertDAE.convert: time 0.002349/0.02791, allocations: 2.924 MB / 0.6713 GB, free: 24.22 MB / 0.5262 GB Notification: Performance of FrontEnd - DAE generated: time 8.897e-06/0.02792, allocations: 4.922 kB / 0.6713 GB, free: 24.21 MB / 0.5262 GB Notification: Performance of FrontEnd: time 2.194e-06/0.02792, allocations: 0 / 0.6713 GB, free: 24.21 MB / 0.5262 GB Notification: Performance of Transformations before backend: time 6.301e-05/0.02799, allocations: 0 / 0.6713 GB, free: 24.21 MB / 0.5262 GB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 288 * Number of variables: 288 Notification: Performance of Generate backend data structure: time 0.004796/0.03278, allocations: 2.776 MB / 0.6741 GB, free: 22.18 MB / 0.5262 GB Notification: Performance of prepare preOptimizeDAE: time 4.4e-05/0.03283, allocations: 9.938 kB / 0.6741 GB, free: 22.18 MB / 0.5262 GB Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0004938/0.03332, allocations: 283.4 kB / 0.6743 GB, free: 22.05 MB / 0.5262 GB Notification: Performance of preOpt evaluateParameters (simulation): time 0.001248/0.03457, allocations: 0.8851 MB / 0.6752 GB, free: 21.41 MB / 0.5262 GB Notification: Performance of preOpt simplifyIfEquations (simulation): time 6.614e-05/0.03464, allocations: 89.25 kB / 0.6753 GB, free: 21.37 MB / 0.5262 GB Notification: Performance of preOpt expandDerOperator (simulation): time 0.0002258/0.03486, allocations: 148.8 kB / 0.6754 GB, free: 21.32 MB / 0.5262 GB Notification: Performance of preOpt clockPartitioning (simulation): time 0.002634/0.0375, allocations: 1.887 MB / 0.6773 GB, free: 20.17 MB / 0.5262 GB Notification: Performance of preOpt findStateOrder (simulation): time 6.96e-05/0.03757, allocations: 24.36 kB / 0.6773 GB, free: 20.16 MB / 0.5262 GB Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.000108/0.03767, allocations: 47.84 kB / 0.6773 GB, free: 20.13 MB / 0.5262 GB Notification: Performance of preOpt inlineArrayEqn (simulation): time 2.147e-05/0.0377, allocations: 28.12 kB / 0.6774 GB, free: 20.13 MB / 0.5262 GB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.002445/0.04014, allocations: 1.513 MB / 0.6788 GB, free: 19.34 MB / 0.5262 GB Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.006435/0.04657, allocations: 5.242 MB / 0.684 GB, free: 15.75 MB / 0.5262 GB Notification: Performance of preOpt comSubExp (simulation): time 0.003172/0.04975, allocations: 1.822 MB / 0.6857 GB, free: 14.65 MB / 0.5262 GB Notification: Performance of preOpt resolveLoops (simulation): time 0.001363/0.05111, allocations: 1.01 MB / 0.6867 GB, free: 13.96 MB / 0.5262 GB Notification: Performance of preOpt evalFunc (simulation): time 8.411e-05/0.05119, allocations: 35.42 kB / 0.6868 GB, free: 13.95 MB / 0.5262 GB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.002538/0.05373, allocations: 2.411 MB / 0.6891 GB, free: 12.21 MB / 0.5262 GB Notification: Performance of pre-optimization done (n=198): time 3.908e-06/0.05374, allocations: 0 / 0.6891 GB, free: 12.21 MB / 0.5262 GB Notification: Performance of matching and sorting (n=210): time 0.01101/0.06474, allocations: 7.932 MB / 0.6969 GB, free: 5.484 MB / 0.5262 GB Notification: Performance of inlineWhenForInitialization (initialization): time 0.0002536/0.065, allocations: 1.177 MB / 0.698 GB, free: 4.043 MB / 0.5262 GB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.001432/0.06643, allocations: 1.421 MB / 0.6994 GB, free: 2.602 MB / 0.5262 GB Notification: Performance of collectPreVariables (initialization): time 0.0001837/0.06661, allocations: 101.7 kB / 0.6995 GB, free: 2.496 MB / 0.5262 GB Notification: Performance of collectInitialEqns (initialization): time 0.0004075/0.06702, allocations: 0.6852 MB / 0.7002 GB, free: 1.801 MB / 0.5262 GB Notification: Performance of collectInitialBindings (initialization): time 0.0005037/0.06753, allocations: 0.8147 MB / 0.701 GB, free: 0.9805 MB / 0.5262 GB Notification: Performance of simplifyInitialFunctions (initialization): time 0.0006178/0.06814, allocations: 0.5459 MB / 0.7015 GB, free: 440 kB / 0.5262 GB Notification: Performance of setup shared object (initialization): time 0.0001042/0.06825, allocations: 484.7 kB / 0.702 GB, free: 15.95 MB / 0.5418 GB Notification: Performance of preBalanceInitialSystem (initialization): time 0.002314/0.07056, allocations: 1.476 MB / 0.7034 GB, free: 14.36 MB / 0.5418 GB Notification: Performance of partitionIndependentBlocks (initialization): time 0.003354/0.07392, allocations: 2.326 MB / 0.7057 GB, free: 11.55 MB / 0.5418 GB Notification: Performance of analyzeInitialSystem (initialization): time 0.00671/0.08062, allocations: 4.394 MB / 0.71 GB, free: 6.555 MB / 0.5418 GB Notification: Performance of solveInitialSystemEqSystem (initialization): time 3.335e-05/0.08066, allocations: 11.94 kB / 0.71 GB, free: 6.543 MB / 0.5418 GB Notification: Performance of matching and sorting (n=318) (initialization): time 0.006635/0.08729, allocations: 3.699 MB / 0.7136 GB, free: 2.613 MB / 0.5418 GB Notification: Performance of prepare postOptimizeDAE: time 0.0003831/0.08768, allocations: 0.5103 MB / 0.7141 GB, free: 1.992 MB / 0.5418 GB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 2.776e-05/0.0877, allocations: 16 kB / 0.7141 GB, free: 1.977 MB / 0.5418 GB Notification: Performance of postOpt tearingSystem (initialization): time 4.789e-05/0.08775, allocations: 28 kB / 0.7141 GB, free: 1.949 MB / 0.5418 GB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.001811/0.08956, allocations: 0.5 MB / 0.7146 GB, free: 1.449 MB / 0.5418 GB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 5.06e-05/0.08961, allocations: 39.86 kB / 0.7146 GB, free: 1.41 MB / 0.5418 GB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.001372/0.09099, allocations: 108 kB / 0.7147 GB, free: 1.305 MB / 0.5418 GB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.0001697/0.09116, allocations: 96 kB / 0.7148 GB, free: 1.211 MB / 0.5418 GB Warning: Assuming fixed start value for the following 60 variables: low_clearance.pK_lower.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real low_clearance.pK_lower.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real low_clearance.pK_lower.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real low_clearance.pK_lower.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real low_clearance.pK_1C_Lithium_upper.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real low_clearance.pK_1C_Lithium_upper.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real low_clearance.pK_1C_Lithium_upper.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real low_clearance.pK_1C_Lithium.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real low_clearance.pK_1C_Lithium.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real low_clearance.pK_1C_Lithium.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real normal.pK_lower.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real normal.pK_lower.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real normal.pK_lower.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real normal.pK_lower.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real normal.pK_1C_Lithium_upper.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real normal.pK_1C_Lithium_upper.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real normal.pK_1C_Lithium_upper.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real normal.pK_1C_Lithium.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real normal.pK_1C_Lithium.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real normal.pK_1C_Lithium.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real normal.pK_1C_Lithium.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real normal.pK_1C_Lithium.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium_upper.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium_upper.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_lower.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_lower.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_lower.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_lower.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium_upper.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium_upper.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_lower.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_lower.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_lower.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_lower.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean normal.pK_1C_Lithium.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean normal.pK_1C_Lithium_upper.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean normal.pK_lower.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean normal.pK_lower.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean low_clearance.pK_1C_Lithium.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean low_clearance.pK_1C_Lithium_upper.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean low_clearance.pK_lower.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean low_clearance.pK_lower.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 72 * Number of states: 0 () * Number of discrete variables: 126 ($PRE.normal.pK_1C_Lithium.central.Cmin,normal.pK_1C_Lithium.central.Cmin,$PRE.normal.pK_1C_Lithium.central.Cmax,normal.pK_1C_Lithium.central.Cmax,$PRE.normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,$PRE.normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,$PRE.normal.pK_1C_Lithium_upper.central.Cmin,normal.pK_1C_Lithium_upper.central.Cmin,$PRE.normal.pK_1C_Lithium_upper.central.Cmax,normal.pK_1C_Lithium_upper.central.Cmax,$PRE.normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,$PRE.normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,$PRE.normal.pK_lower.central.Cmin,normal.pK_lower.central.Cmin,$PRE.normal.pK_lower.central.Cmax,normal.pK_lower.central.Cmax,$PRE.normal.pK_lower.periodicDose.absorptionLumen.Cmin,normal.pK_lower.periodicDose.absorptionLumen.Cmin,$PRE.normal.pK_lower.periodicDose.absorptionLumen.Cmax,normal.pK_lower.periodicDose.absorptionLumen.Cmax,$PRE.low_clearance.pK_1C_Lithium.central.Cmin,low_clearance.pK_1C_Lithium.central.Cmin,$PRE.low_clearance.pK_1C_Lithium.central.Cmax,low_clearance.pK_1C_Lithium.central.Cmax,$PRE.low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,$PRE.low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,$PRE.low_clearance.pK_1C_Lithium_upper.central.Cmin,low_clearance.pK_1C_Lithium_upper.central.Cmin,$PRE.low_clearance.pK_1C_Lithium_upper.central.Cmax,low_clearance.pK_1C_Lithium_upper.central.Cmax,$PRE.low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,$PRE.low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,$PRE.low_clearance.pK_lower.central.Cmin,low_clearance.pK_lower.central.Cmin,$PRE.low_clearance.pK_lower.central.Cmax,low_clearance.pK_lower.central.Cmax,$PRE.low_clearance.pK_lower.periodicDose.absorptionLumen.Cmin,low_clearance.pK_lower.periodicDose.absorptionLumen.Cmin,$PRE.low_clearance.pK_lower.periodicDose.absorptionLumen.Cmax,low_clearance.pK_lower.periodicDose.absorptionLumen.Cmax,$PRE.normal.pK_1C_Lithium.periodicDose.pulse.count,$PRE.normal.pK_1C_Lithium.periodicDose.pulse.T_start,$PRE.normal.pK_1C_Lithium.periodicDose.absorptionLumen.rising,$PRE.normal.pK_1C_Lithium.central.rising,normal.pK_1C_Lithium.periodicDose.pulse.count,normal.pK_1C_Lithium.periodicDose.pulse.T_start,normal.pK_1C_Lithium.periodicDose.absorptionLumen.rising,normal.pK_1C_Lithium.central.rising,$whenCondition30,$whenCondition29,$whenCondition28,$whenCondition27,$whenCondition26,$PRE.normal.pK_1C_Lithium_upper.periodicDose.pulse.count,$PRE.normal.pK_1C_Lithium_upper.periodicDose.pulse.T_start,$PRE.normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,$PRE.normal.pK_1C_Lithium_upper.central.rising,normal.pK_1C_Lithium_upper.periodicDose.pulse.count,normal.pK_1C_Lithium_upper.periodicDose.pulse.T_start,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,normal.pK_1C_Lithium_upper.central.rising,$whenCondition25,$whenCondition24,$whenCondition23,$whenCondition22,$whenCondition21,$PRE.normal.pK_lower.periodicDose.pulse.count,$PRE.normal.pK_lower.periodicDose.pulse.T_start,$PRE.normal.pK_lower.periodicDose.absorptionLumen.rising,$PRE.normal.pK_lower.central.rising,normal.pK_lower.periodicDose.pulse.count,normal.pK_lower.periodicDose.pulse.T_start,normal.pK_lower.periodicDose.absorptionLumen.rising,normal.pK_lower.central.rising,$whenCondition20,$whenCondition19,$whenCondition18,$whenCondition17,$whenCondition16,$PRE.low_clearance.pK_1C_Lithium.periodicDose.pulse.count,$PRE.low_clearance.pK_1C_Lithium.periodicDose.pulse.T_start,$PRE.low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.rising,$PRE.low_clearance.pK_1C_Lithium.central.rising,low_clearance.pK_1C_Lithium.periodicDose.pulse.count,low_clearance.pK_1C_Lithium.periodicDose.pulse.T_start,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.rising,low_clearance.pK_1C_Lithium.central.rising,$whenCondition15,$whenCondition14,$whenCondition13,$whenCondition12,$whenCondition11,$PRE.low_clearance.pK_1C_Lithium_upper.periodicDose.pulse.count,$PRE.low_clearance.pK_1C_Lithium_upper.periodicDose.pulse.T_start,$PRE.low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,$PRE.low_clearance.pK_1C_Lithium_upper.central.rising,low_clearance.pK_1C_Lithium_upper.periodicDose.pulse.count,low_clearance.pK_1C_Lithium_upper.periodicDose.pulse.T_start,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,low_clearance.pK_1C_Lithium_upper.central.rising,$whenCondition10,$whenCondition9,$whenCondition8,$whenCondition7,$whenCondition6,$PRE.low_clearance.pK_lower.periodicDose.pulse.count,$PRE.low_clearance.pK_lower.periodicDose.pulse.T_start,$PRE.low_clearance.pK_lower.periodicDose.absorptionLumen.rising,$PRE.low_clearance.pK_lower.central.rising,low_clearance.pK_lower.periodicDose.pulse.count,low_clearance.pK_lower.periodicDose.pulse.T_start,low_clearance.pK_lower.periodicDose.absorptionLumen.rising,low_clearance.pK_lower.central.rising,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1) * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (300): * Single equations (assignments): 282 * Array equations: 0 * Algorithm blocks: 18 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of prepare postOptimizeDAE: time 0.001739/0.09289, allocations: 1.223 MB / 0.716 GB, free: 15.95 MB / 0.5574 GB Notification: Performance of postOpt lateInlineFunction (simulation): time 0.000463/0.09336, allocations: 255 kB / 0.7163 GB, free: 15.7 MB / 0.5574 GB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0003862/0.09374, allocations: 157.6 kB / 0.7164 GB, free: 15.55 MB / 0.5574 GB Notification: Performance of postOpt inlineArrayEqn (simulation): time 1.884e-05/0.09376, allocations: 16 kB / 0.7164 GB, free: 15.53 MB / 0.5574 GB Notification: Performance of postOpt constantLinearSystem (simulation): time 1.978e-05/0.09378, allocations: 11.55 kB / 0.7165 GB, free: 15.52 MB / 0.5574 GB Notification: Performance of postOpt simplifysemiLinear (simulation): time 1.995e-05/0.0938, allocations: 11.91 kB / 0.7165 GB, free: 15.51 MB / 0.5574 GB Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.00916/0.103, allocations: 5.64 MB / 0.722 GB, free: 9.676 MB / 0.5574 GB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 1.096e-05/0.103, allocations: 3.938 kB / 0.722 GB, free: 9.672 MB / 0.5574 GB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.00157/0.1045, allocations: 323.6 kB / 0.7223 GB, free: 9.355 MB / 0.5574 GB Notification: Performance of postOpt tearingSystem (simulation): time 1.366e-05/0.1046, allocations: 8 kB / 0.7223 GB, free: 9.348 MB / 0.5574 GB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 0.0001759/0.1047, allocations: 79.95 kB / 0.7224 GB, free: 9.27 MB / 0.5574 GB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 9.908e-06/0.1047, allocations: 4 kB / 0.7224 GB, free: 9.266 MB / 0.5574 GB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 4.468e-06/0.1047, allocations: 4 kB / 0.7224 GB, free: 9.262 MB / 0.5574 GB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.007696/0.1124, allocations: 5.082 MB / 0.7273 GB, free: 3.938 MB / 0.5574 GB Notification: Performance of postOpt removeConstants (simulation): time 0.001169/0.1136, allocations: 394.7 kB / 0.7277 GB, free: 3.551 MB / 0.5574 GB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0003786/0.114, allocations: 100 kB / 0.7278 GB, free: 3.453 MB / 0.5574 GB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0009927/0.115, allocations: 83.94 kB / 0.7279 GB, free: 3.371 MB / 0.5574 GB Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0004868/0.1155, allocations: 235.7 kB / 0.7281 GB, free: 3.141 MB / 0.5574 GB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 0.0001488/0.1156, allocations: 75.95 kB / 0.7282 GB, free: 3.066 MB / 0.5574 GB Notification: Performance of sorting global known variables: time 0.001244/0.1169, allocations: 0.8342 MB / 0.729 GB, free: 2.223 MB / 0.5574 GB Notification: Performance of sort global known variables: time 8e-08/0.1169, allocations: 0 / 0.729 GB, free: 2.223 MB / 0.5574 GB Notification: Performance of remove unused functions: time 0.001765/0.1186, allocations: 492 kB / 0.7295 GB, free: 1.742 MB / 0.5574 GB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 6 * Number of states: 42 (low_clearance.pK_lower.central.C,low_clearance.pK_lower.central.AUC,low_clearance.pK_lower.elim.MExc,low_clearance.pK_lower.periodicDose.TotalCumulativeMass,low_clearance.pK_lower.periodicDose.absorptionLumen.C,low_clearance.pK_lower.periodicDose.absorptionLumen.AUC,low_clearance.pK_lower.periodicDose.variableDose.TotalCumulativeMass,low_clearance.pK_1C_Lithium_upper.central.C,low_clearance.pK_1C_Lithium_upper.central.AUC,low_clearance.pK_1C_Lithium_upper.elim.MExc,low_clearance.pK_1C_Lithium_upper.periodicDose.TotalCumulativeMass,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.C,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.AUC,low_clearance.pK_1C_Lithium_upper.periodicDose.variableDose.TotalCumulativeMass,low_clearance.pK_1C_Lithium.central.C,low_clearance.pK_1C_Lithium.central.AUC,low_clearance.pK_1C_Lithium.elim.MExc,low_clearance.pK_1C_Lithium.periodicDose.TotalCumulativeMass,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.C,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.AUC,low_clearance.pK_1C_Lithium.periodicDose.variableDose.TotalCumulativeMass,normal.pK_lower.central.C,normal.pK_lower.central.AUC,normal.pK_lower.elim.MExc,normal.pK_lower.periodicDose.TotalCumulativeMass,normal.pK_lower.periodicDose.absorptionLumen.C,normal.pK_lower.periodicDose.absorptionLumen.AUC,normal.pK_lower.periodicDose.variableDose.TotalCumulativeMass,normal.pK_1C_Lithium_upper.central.C,normal.pK_1C_Lithium_upper.central.AUC,normal.pK_1C_Lithium_upper.elim.MExc,normal.pK_1C_Lithium_upper.periodicDose.TotalCumulativeMass,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.C,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.AUC,normal.pK_1C_Lithium_upper.periodicDose.variableDose.TotalCumulativeMass,normal.pK_1C_Lithium.central.C,normal.pK_1C_Lithium.central.AUC,normal.pK_1C_Lithium.elim.MExc,normal.pK_1C_Lithium.periodicDose.TotalCumulativeMass,normal.pK_1C_Lithium.periodicDose.absorptionLumen.C,normal.pK_1C_Lithium.periodicDose.absorptionLumen.AUC,normal.pK_1C_Lithium.periodicDose.variableDose.TotalCumulativeMass) * Number of discrete variables: 78 ($whenCondition1,$whenCondition2,$whenCondition3,$whenCondition4,$whenCondition5,low_clearance.pK_lower.central.Cmax,low_clearance.pK_lower.central.Cmin,low_clearance.pK_lower.central.rising,low_clearance.pK_lower.periodicDose.absorptionLumen.Cmax,low_clearance.pK_lower.periodicDose.absorptionLumen.Cmin,low_clearance.pK_lower.periodicDose.absorptionLumen.rising,low_clearance.pK_lower.periodicDose.pulse.T_start,low_clearance.pK_lower.periodicDose.pulse.count,$whenCondition6,$whenCondition7,$whenCondition8,$whenCondition9,$whenCondition10,low_clearance.pK_1C_Lithium_upper.central.Cmax,low_clearance.pK_1C_Lithium_upper.central.Cmin,low_clearance.pK_1C_Lithium_upper.central.rising,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,low_clearance.pK_1C_Lithium_upper.periodicDose.pulse.T_start,low_clearance.pK_1C_Lithium_upper.periodicDose.pulse.count,$whenCondition11,$whenCondition12,$whenCondition13,$whenCondition14,$whenCondition15,low_clearance.pK_1C_Lithium.central.Cmax,low_clearance.pK_1C_Lithium.central.Cmin,low_clearance.pK_1C_Lithium.central.rising,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.rising,low_clearance.pK_1C_Lithium.periodicDose.pulse.T_start,low_clearance.pK_1C_Lithium.periodicDose.pulse.count,$whenCondition16,$whenCondition17,$whenCondition18,$whenCondition19,$whenCondition20,normal.pK_lower.central.Cmax,normal.pK_lower.central.Cmin,normal.pK_lower.central.rising,normal.pK_lower.periodicDose.absorptionLumen.Cmax,normal.pK_lower.periodicDose.absorptionLumen.Cmin,normal.pK_lower.periodicDose.absorptionLumen.rising,normal.pK_lower.periodicDose.pulse.T_start,normal.pK_lower.periodicDose.pulse.count,$whenCondition21,$whenCondition22,$whenCondition23,$whenCondition24,$whenCondition25,normal.pK_1C_Lithium_upper.central.Cmax,normal.pK_1C_Lithium_upper.central.Cmin,normal.pK_1C_Lithium_upper.central.rising,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,normal.pK_1C_Lithium_upper.periodicDose.pulse.T_start,normal.pK_1C_Lithium_upper.periodicDose.pulse.count,$whenCondition26,$whenCondition27,$whenCondition28,$whenCondition29,$whenCondition30,normal.pK_1C_Lithium.central.Cmax,normal.pK_1C_Lithium.central.Cmin,normal.pK_1C_Lithium.central.rising,normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,normal.pK_1C_Lithium.periodicDose.absorptionLumen.rising,normal.pK_1C_Lithium.periodicDose.pulse.T_start,normal.pK_1C_Lithium.periodicDose.pulse.count) * Number of discrete states: 66 (normal.pK_1C_Lithium.periodicDose.pulse.count,normal.pK_1C_Lithium.central.Cmin,$whenCondition30,normal.pK_1C_Lithium.central.Cmax,$whenCondition29,normal.pK_1C_Lithium.central.rising,normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,$whenCondition28,normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,$whenCondition27,normal.pK_1C_Lithium.periodicDose.absorptionLumen.rising,normal.pK_1C_Lithium_upper.periodicDose.pulse.count,normal.pK_1C_Lithium_upper.central.Cmin,$whenCondition25,normal.pK_1C_Lithium_upper.central.Cmax,$whenCondition24,normal.pK_1C_Lithium_upper.central.rising,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,$whenCondition23,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,$whenCondition22,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,normal.pK_lower.periodicDose.pulse.count,normal.pK_lower.central.Cmin,$whenCondition20,normal.pK_lower.central.Cmax,$whenCondition19,normal.pK_lower.central.rising,normal.pK_lower.periodicDose.absorptionLumen.Cmin,$whenCondition18,normal.pK_lower.periodicDose.absorptionLumen.Cmax,$whenCondition17,normal.pK_lower.periodicDose.absorptionLumen.rising,low_clearance.pK_1C_Lithium.periodicDose.pulse.count,low_clearance.pK_1C_Lithium.central.Cmin,$whenCondition15,low_clearance.pK_1C_Lithium.central.Cmax,$whenCondition14,low_clearance.pK_1C_Lithium.central.rising,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,$whenCondition13,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,$whenCondition12,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.rising,low_clearance.pK_1C_Lithium_upper.periodicDose.pulse.count,low_clearance.pK_1C_Lithium_upper.central.Cmin,$whenCondition10,low_clearance.pK_1C_Lithium_upper.central.Cmax,$whenCondition9,low_clearance.pK_1C_Lithium_upper.central.rising,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,$whenCondition8,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,$whenCondition7,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,low_clearance.pK_lower.periodicDose.pulse.count,low_clearance.pK_lower.central.Cmin,$whenCondition5,low_clearance.pK_lower.central.Cmax,$whenCondition4,low_clearance.pK_lower.central.rising,low_clearance.pK_lower.periodicDose.absorptionLumen.Cmin,$whenCondition3,low_clearance.pK_lower.periodicDose.absorptionLumen.Cmax,$whenCondition2,low_clearance.pK_lower.periodicDose.absorptionLumen.rising) * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (174): * Single equations (assignments): 150 * Array equations: 0 * Algorithm blocks: 12 * Record equations: 0 * When equations: 12 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of Backend phase and start with SimCode phase: time 0.000426/0.1191, allocations: 316.5 kB / 0.7298 GB, free: 1.426 MB / 0.5574 GB Notification: Performance of simCode: created initialization part: time 0.006099/0.1252, allocations: 4.07 MB / 0.7338 GB, free: 12.95 MB / 0.573 GB Notification: Performance of simCode: created event and clocks part: time 4.408e-06/0.1252, allocations: 0 / 0.7338 GB, free: 12.95 MB / 0.573 GB Notification: Performance of simCode: created simulation system equations: time 0.002937/0.1281, allocations: 2.104 MB / 0.7358 GB, free: 10.62 MB / 0.573 GB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.003075/0.1312, allocations: 0.5782 MB / 0.7364 GB, free: 10.1 MB / 0.573 GB Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.009026/0.1402, allocations: 4.871 MB / 0.7411 GB, free: 5.227 MB / 0.573 GB Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0008396/0.141, allocations: 0.6589 MB / 0.7418 GB, free: 4.531 MB / 0.573 GB Notification: Performance of simCode: alias equations: time 0.001089/0.1421, allocations: 187.9 kB / 0.742 GB, free: 4.352 MB / 0.573 GB Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0004204/0.1425, allocations: 132.5 kB / 0.7421 GB, free: 4.223 MB / 0.573 GB Notification: Performance of SimCode: time 2.274e-06/0.1425, allocations: 0 / 0.7421 GB, free: 4.223 MB / 0.573 GB Notification: Performance of Templates: time 0.05467/0.1972, allocations: 30.23 MB / 0.7716 GB, free: 7.379 MB / 0.6043 GB " [Timeout remaining time 660] make -j1 -f Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment.makefile [Timeout 660] (rm -f Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment.sim & ./Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment -abortSlowSimulation -alarm=240 -lv LOG_STATS > Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment.pipe 2>&1) [Timeout 240] [Calling sys.exit(0), Time elapsed: 9.287887096987106]