Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001887/0.001887, allocations: 93.47 kB / 19.44 MB, free: 336 kB / 13.93 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.002006/0.002006, allocations: 169.2 kB / 22.76 MB, free: 1.664 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.556/1.556, allocations: 177.1 MB / 203.1 MB, free: 5.566 MB / 186.7 MB
"
[Timeout remaining time 178]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180]
"[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory.
Missing names are:
	Paracetamol_Experiment
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 3.403/3.403, allocations: 274.5 MB / 0.5215 GB, free: 14.15 MB / 458.7 MB
"
[Timeout remaining time 176]
Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites,tolerance=1e-09,outputFormat="empty",numberOfIntervals=864000,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites")
translateModel(Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites,tolerance=1e-09,outputFormat="empty",numberOfIntervals=864000,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.884e-06/1.884e-06, allocations: 0 / 0.6474 GB, free: 38.94 MB / 0.5262 GB
Notification: Performance of FrontEnd - Absyn->SCode: time 2.222e-05/2.411e-05, allocations: 5.172 kB / 0.6474 GB, free: 38.94 MB / 0.5262 GB
Notification: Performance of NFInst.instantiate(Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites): time 0.005078/0.005102, allocations: 5.693 MB / 0.653 GB, free: 35.22 MB / 0.5262 GB
Notification: Performance of NFInst.instExpressions: time 0.001814/0.006916, allocations: 1.297 MB / 0.6542 GB, free: 34.32 MB / 0.5262 GB
Notification: Performance of NFInst.updateImplicitVariability: time 0.0002675/0.007183, allocations: 7.375 kB / 0.6542 GB, free: 34.32 MB / 0.5262 GB
Notification: Performance of NFTyping.typeComponents: time 0.0002448/0.007428, allocations: 129.7 kB / 0.6544 GB, free: 34.24 MB / 0.5262 GB
Notification: Performance of NFTyping.typeBindings: time 0.0005741/0.008002, allocations: 370 kB / 0.6547 GB, free: 33.98 MB / 0.5262 GB
Notification: Performance of NFTyping.typeClassSections: time 0.0003993/0.008402, allocations: 258.6 kB / 0.655 GB, free: 33.81 MB / 0.5262 GB
Notification: Performance of NFFlatten.flatten: time 0.0009663/0.009368, allocations: 1.277 MB / 0.6562 GB, free: 33.09 MB / 0.5262 GB
Notification: Performance of NFFlatten.resolveConnections: time 0.0003622/0.00973, allocations: 213.7 kB / 0.6564 GB, free: 32.96 MB / 0.5262 GB
Notification: Performance of NFEvalConstants.evaluate: time 0.000721/0.01045, allocations: 0.6594 MB / 0.6571 GB, free: 32.68 MB / 0.5262 GB
Notification: Performance of NFSimplifyModel.simplify: time 0.0005743/0.01103, allocations: 393.1 kB / 0.6574 GB, free: 32.55 MB / 0.5262 GB
Notification: Performance of NFPackage.collectConstants: time 0.0001372/0.01116, allocations: 110.6 kB / 0.6575 GB, free: 32.55 MB / 0.5262 GB
Notification: Performance of NFFlatten.collectFunctions: time 0.0001919/0.01135, allocations: 108.8 kB / 0.6577 GB, free: 32.55 MB / 0.5262 GB
Notification: Performance of NFScalarize.scalarize: time 0.0001456/0.0115, allocations: 210.2 kB / 0.6579 GB, free: 32.39 MB / 0.5262 GB
Notification: Performance of NFVerifyModel.verify: time 0.0003623/0.01186, allocations: 383 kB / 0.6582 GB, free: 32.23 MB / 0.5262 GB
Notification: Performance of NFConvertDAE.convert: time 0.0009328/0.0128, allocations: 1.175 MB / 0.6594 GB, free: 31.73 MB / 0.5262 GB
Notification: Performance of FrontEnd - DAE generated: time 3.387e-06/0.0128, allocations: 5.312 kB / 0.6594 GB, free: 31.73 MB / 0.5262 GB
Notification: Performance of FrontEnd: time 1.132e-06/0.0128, allocations: 0 / 0.6594 GB, free: 31.73 MB / 0.5262 GB
Notification: Performance of Transformations before backend: time 1.157e-05/0.01281, allocations: 0 / 0.6594 GB, free: 31.73 MB / 0.5262 GB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 165
 * Number of variables: 165
Notification: Performance of Generate backend data structure: time 0.002013/0.01482, allocations: 1.544 MB / 0.6609 GB, free: 30.55 MB / 0.5262 GB
Notification: Performance of prepare preOptimizeDAE: time 4.163e-05/0.01487, allocations: 13.09 kB / 0.6609 GB, free: 30.55 MB / 0.5262 GB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0002422/0.01511, allocations: 153.5 kB / 0.661 GB, free: 30.48 MB / 0.5262 GB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.0005546/0.01566, allocations: 459.2 kB / 0.6615 GB, free: 30.14 MB / 0.5262 GB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 4.52e-05/0.01571, allocations: 55.09 kB / 0.6615 GB, free: 30.12 MB / 0.5262 GB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.0001167/0.01582, allocations: 78.14 kB / 0.6616 GB, free: 30.09 MB / 0.5262 GB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.001209/0.01703, allocations: 0.9203 MB / 0.6625 GB, free: 29.57 MB / 0.5262 GB
Notification: Performance of preOpt findStateOrder (simulation): time 3.704e-05/0.01707, allocations: 14.7 kB / 0.6625 GB, free: 29.56 MB / 0.5262 GB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 5.897e-05/0.01713, allocations: 32.19 kB / 0.6625 GB, free: 29.54 MB / 0.5262 GB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 1.469e-05/0.01714, allocations: 17.47 kB / 0.6626 GB, free: 29.54 MB / 0.5262 GB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.001138/0.01828, allocations: 0.7301 MB / 0.6633 GB, free: 29.19 MB / 0.5262 GB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.002922/0.0212, allocations: 2.358 MB / 0.6656 GB, free: 27.69 MB / 0.5262 GB
Notification: Performance of preOpt comSubExp (simulation): time 0.001019/0.02222, allocations: 0.731 MB / 0.6663 GB, free: 27.28 MB / 0.5262 GB
Notification: Performance of preOpt resolveLoops (simulation): time 0.0005756/0.0228, allocations: 477.3 kB / 0.6667 GB, free: 26.98 MB / 0.5262 GB
Notification: Performance of preOpt evalFunc (simulation): time 4.365e-05/0.02284, allocations: 13.28 kB / 0.6668 GB, free: 26.98 MB / 0.5262 GB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.0009585/0.0238, allocations: 1.054 MB / 0.6678 GB, free: 26.2 MB / 0.5262 GB
Notification: Performance of pre-optimization done (n=99): time 2.255e-06/0.0238, allocations: 0 / 0.6678 GB, free: 26.2 MB / 0.5262 GB
Notification: Performance of matching and sorting (n=105): time 0.004576/0.02838, allocations: 3.225 MB / 0.6709 GB, free: 24.25 MB / 0.5262 GB
Notification: Performance of inlineWhenForInitialization (initialization): time 0.0001165/0.0285, allocations: 0.5425 MB / 0.6715 GB, free: 23.61 MB / 0.5262 GB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0005788/0.02907, allocations: 0.6738 MB / 0.6721 GB, free: 23.25 MB / 0.5262 GB
Notification: Performance of collectPreVariables (initialization): time 5.914e-05/0.02913, allocations: 62.41 kB / 0.6722 GB, free: 23.2 MB / 0.5262 GB
Notification: Performance of collectInitialEqns (initialization): time 0.000197/0.02933, allocations: 404.8 kB / 0.6726 GB, free: 22.88 MB / 0.5262 GB
Notification: Performance of collectInitialBindings (initialization): time 0.0002154/0.02955, allocations: 393.9 kB / 0.6729 GB, free: 22.58 MB / 0.5262 GB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.000299/0.02984, allocations: 252.2 kB / 0.6732 GB, free: 22.45 MB / 0.5262 GB
Notification: Performance of setup shared object (initialization): time 0.0001952/0.03004, allocations: 0.6462 MB / 0.6738 GB, free: 21.88 MB / 0.5262 GB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.0007452/0.03078, allocations: 0.656 MB / 0.6745 GB, free: 21.43 MB / 0.5262 GB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.0008403/0.03163, allocations: 1.054 MB / 0.6755 GB, free: 20.47 MB / 0.5262 GB
Notification: Performance of analyzeInitialSystem (initialization): time 0.002015/0.03364, allocations: 2.034 MB / 0.6775 GB, free: 18.84 MB / 0.5262 GB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 7.254e-06/0.03365, allocations: 3.594 kB / 0.6775 GB, free: 18.84 MB / 0.5262 GB
Notification: Performance of matching and sorting (n=157) (initialization): time 0.002065/0.03571, allocations: 1.739 MB / 0.6792 GB, free: 17.76 MB / 0.5262 GB
Notification: Performance of prepare postOptimizeDAE: time 8.356e-05/0.0358, allocations: 262.9 kB / 0.6794 GB, free: 17.47 MB / 0.5262 GB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 1.414e-05/0.03581, allocations: 8.938 kB / 0.6794 GB, free: 17.47 MB / 0.5262 GB
Notification: Performance of postOpt tearingSystem (initialization): time 2.393e-05/0.03583, allocations: 11.44 kB / 0.6794 GB, free: 17.47 MB / 0.5262 GB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0008753/0.03671, allocations: 248.6 kB / 0.6797 GB, free: 17.45 MB / 0.5262 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 2.209e-05/0.03673, allocations: 18.86 kB / 0.6797 GB, free: 17.45 MB / 0.5262 GB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0005958/0.03733, allocations: 64.47 kB / 0.6798 GB, free: 17.42 MB / 0.5262 GB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 7.323e-05/0.0374, allocations: 47.36 kB / 0.6798 GB, free: 17.41 MB / 0.5262 GB
Warning: Assuming fixed start value for the following 30 variables:
         remdesivir.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         remdesivir.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         remdesivir.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         remdesivir.peripheral.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         GS_704277.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         GS_704277.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         GS_704277.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         GS_704277.peripheral.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         GS_441524.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         GS_441524.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         GS_441524.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         GS_441524.peripheral.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         GS_441524.peripheral.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         GS_441524.peripheral.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         GS_441524.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         GS_441524.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         GS_704277.peripheral.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         GS_704277.peripheral.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         GS_704277.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         GS_704277.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         remdesivir.peripheral.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         remdesivir.peripheral.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         remdesivir.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         remdesivir.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         GS_441524.peripheral.rising:DISCRETE(fixed = true protected = true )  type: Boolean
         GS_441524.central.rising:DISCRETE(fixed = true protected = true )  type: Boolean
         GS_704277.peripheral.rising:DISCRETE(fixed = true protected = true )  type: Boolean
         GS_704277.central.rising:DISCRETE(fixed = true protected = true )  type: Boolean
         remdesivir.peripheral.rising:DISCRETE(fixed = true protected = true )  type: Boolean
         remdesivir.central.rising:DISCRETE(fixed = true protected = true )  type: Boolean
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 32
 * Number of states: 0 ()
 * Number of discrete variables: 63 ($PRE.GS_441524.peripheral.Cmin,GS_441524.peripheral.Cmin,$PRE.GS_441524.peripheral.Cmax,GS_441524.peripheral.Cmax,$PRE.GS_441524.central.Cmin,GS_441524.central.Cmin,$PRE.GS_441524.central.Cmax,GS_441524.central.Cmax,$PRE.GS_704277.peripheral.Cmin,GS_704277.peripheral.Cmin,$PRE.GS_704277.peripheral.Cmax,GS_704277.peripheral.Cmax,$PRE.GS_704277.central.Cmin,GS_704277.central.Cmin,$PRE.GS_704277.central.Cmax,GS_704277.central.Cmax,$PRE.remdesivir.peripheral.Cmin,remdesivir.peripheral.Cmin,$PRE.remdesivir.peripheral.Cmax,remdesivir.peripheral.Cmax,$PRE.remdesivir.central.Cmin,remdesivir.central.Cmin,$PRE.remdesivir.central.Cmax,remdesivir.central.Cmax,$PRE.GS_441524.peripheral.rising,$PRE.GS_441524.periodicDose.pulse.count,$PRE.GS_441524.periodicDose.pulse.T_start,$PRE.GS_441524.central.rising,$PRE.GS_704277.peripheral.rising,$PRE.GS_704277.periodicDose.pulse.count,$PRE.GS_704277.periodicDose.pulse.T_start,$PRE.GS_704277.central.rising,$PRE.remdesivir.peripheral.rising,$PRE.remdesivir.periodicDose.pulse.count,$PRE.remdesivir.periodicDose.pulse.T_start,$PRE.remdesivir.central.rising,GS_441524.peripheral.rising,GS_441524.periodicDose.pulse.count,GS_441524.periodicDose.pulse.T_start,GS_441524.central.rising,GS_704277.peripheral.rising,GS_704277.periodicDose.pulse.count,GS_704277.periodicDose.pulse.T_start,GS_704277.central.rising,remdesivir.peripheral.rising,remdesivir.periodicDose.pulse.count,remdesivir.periodicDose.pulse.T_start,remdesivir.central.rising,$whenCondition12,$whenCondition11,$whenCondition10,$whenCondition9,$whenCondition8,$whenCondition7,$whenCondition6,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1,$whenCondition13,$whenCondition14,$whenCondition15)
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (148):
 * Single equations (assignments): 139
 * Array equations: 0
 * Algorithm blocks: 9
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of prepare postOptimizeDAE: time 0.0005185/0.03792, allocations: 0.6107 MB / 0.6804 GB, free: 16.9 MB / 0.5262 GB
Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0001546/0.03807, allocations: 121.3 kB / 0.6805 GB, free: 16.86 MB / 0.5262 GB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0001833/0.03826, allocations: 88.02 kB / 0.6806 GB, free: 16.79 MB / 0.5262 GB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 7.744e-06/0.03826, allocations: 10.66 kB / 0.6806 GB, free: 16.79 MB / 0.5262 GB
Notification: Performance of postOpt constantLinearSystem (simulation): time 1.163e-05/0.03828, allocations: 0 / 0.6806 GB, free: 16.79 MB / 0.5262 GB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 1.128e-05/0.03829, allocations: 8.078 kB / 0.6806 GB, free: 16.79 MB / 0.5262 GB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.002797/0.04108, allocations: 2.313 MB / 0.6829 GB, free: 15.46 MB / 0.5262 GB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 2.976e-06/0.04109, allocations: 1.625 kB / 0.6829 GB, free: 15.46 MB / 0.5262 GB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.00077/0.04186, allocations: 158.8 kB / 0.683 GB, free: 15.45 MB / 0.5262 GB
Notification: Performance of postOpt tearingSystem (simulation): time 6.532e-06/0.04186, allocations: 7.281 kB / 0.683 GB, free: 15.44 MB / 0.5262 GB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 6.908e-05/0.04193, allocations: 35.48 kB / 0.6831 GB, free: 15.43 MB / 0.5262 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 5.25e-06/0.04194, allocations: 3.156 kB / 0.6831 GB, free: 15.43 MB / 0.5262 GB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 1.733e-06/0.04194, allocations: 8.922 kB / 0.6831 GB, free: 15.42 MB / 0.5262 GB
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.002587/0.04453, allocations: 2.187 MB / 0.6852 GB, free: 14.12 MB / 0.5262 GB
Notification: Performance of postOpt removeConstants (simulation): time 0.0001303/0.04466, allocations: 70.44 kB / 0.6853 GB, free: 14.08 MB / 0.5262 GB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0001448/0.0448, allocations: 39.75 kB / 0.6853 GB, free: 14.06 MB / 0.5262 GB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0004472/0.04525, allocations: 47.48 kB / 0.6854 GB, free: 14.04 MB / 0.5262 GB
Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0002068/0.04546, allocations: 98.81 kB / 0.6855 GB, free: 14.02 MB / 0.5262 GB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 6.221e-05/0.04552, allocations: 36.33 kB / 0.6855 GB, free: 14.01 MB / 0.5262 GB
Notification: Performance of sorting global known variables: time 0.0004226/0.04594, allocations: 433.4 kB / 0.6859 GB, free: 13.79 MB / 0.5262 GB
Notification: Performance of sort global known variables: time 7e-08/0.04594, allocations: 0 / 0.6859 GB, free: 13.79 MB / 0.5262 GB
Notification: Performance of remove unused functions: time 0.0007919/0.04673, allocations: 257.4 kB / 0.6862 GB, free: 13.76 MB / 0.5262 GB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 1
 * Number of states: 21 (remdesivir.central.C,remdesivir.central.AUC,remdesivir.elim.MExc,remdesivir.periodicDose.TotalCumulativeMass,remdesivir.periodicDose.variableDose.TotalCumulativeMass,remdesivir.peripheral.C,remdesivir.peripheral.AUC,GS_704277.central.C,GS_704277.central.AUC,GS_704277.elim.MExc,GS_704277.periodicDose.TotalCumulativeMass,GS_704277.periodicDose.variableDose.TotalCumulativeMass,GS_704277.peripheral.C,GS_704277.peripheral.AUC,GS_441524.central.C,GS_441524.central.AUC,GS_441524.elim.MExc,GS_441524.periodicDose.TotalCumulativeMass,GS_441524.periodicDose.variableDose.TotalCumulativeMass,GS_441524.peripheral.C,GS_441524.peripheral.AUC)
 * Number of discrete variables: 39 ($whenCondition15,$whenCondition14,$whenCondition13,$whenCondition1,$whenCondition2,$whenCondition3,$whenCondition4,$whenCondition5,$whenCondition6,$whenCondition7,$whenCondition8,$whenCondition9,$whenCondition10,$whenCondition11,$whenCondition12,remdesivir.central.Cmax,remdesivir.central.Cmin,remdesivir.central.rising,remdesivir.periodicDose.pulse.T_start,remdesivir.periodicDose.pulse.count,remdesivir.peripheral.Cmax,remdesivir.peripheral.Cmin,remdesivir.peripheral.rising,GS_704277.central.Cmax,GS_704277.central.Cmin,GS_704277.central.rising,GS_704277.periodicDose.pulse.T_start,GS_704277.periodicDose.pulse.count,GS_704277.peripheral.Cmax,GS_704277.peripheral.Cmin,GS_704277.peripheral.rising,GS_441524.central.Cmax,GS_441524.central.Cmin,GS_441524.central.rising,GS_441524.periodicDose.pulse.T_start,GS_441524.periodicDose.pulse.count,GS_441524.peripheral.Cmax,GS_441524.peripheral.Cmin,GS_441524.peripheral.rising)
 * Number of discrete states: 33 (remdesivir.periodicDose.pulse.count,GS_704277.periodicDose.pulse.count,GS_441524.periodicDose.pulse.count,GS_441524.peripheral.Cmin,$whenCondition12,GS_441524.peripheral.Cmax,$whenCondition11,GS_441524.peripheral.rising,GS_441524.central.Cmin,$whenCondition10,GS_441524.central.Cmax,$whenCondition9,GS_441524.central.rising,GS_704277.peripheral.Cmin,$whenCondition8,GS_704277.peripheral.Cmax,$whenCondition7,GS_704277.peripheral.rising,GS_704277.central.Cmin,$whenCondition6,GS_704277.central.Cmax,$whenCondition5,GS_704277.central.rising,remdesivir.peripheral.Cmin,$whenCondition4,remdesivir.peripheral.Cmax,$whenCondition3,remdesivir.peripheral.rising,remdesivir.central.Cmin,$whenCondition2,remdesivir.central.Cmax,$whenCondition1,remdesivir.central.rising)
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (87):
 * Single equations (assignments): 75
 * Array equations: 0
 * Algorithm blocks: 6
 * Record equations: 0
 * When equations: 6
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of Backend phase and start with SimCode phase: time 0.0001912/0.04692, allocations: 194.2 kB / 0.6863 GB, free: 13.63 MB / 0.5262 GB
Notification: Performance of simCode: created initialization part: time 0.001945/0.04887, allocations: 1.896 MB / 0.6882 GB, free: 12.25 MB / 0.5262 GB
Notification: Performance of simCode: created event and clocks part: time 2.024e-06/0.04887, allocations: 0 / 0.6882 GB, free: 12.25 MB / 0.5262 GB
Notification: Performance of simCode: created simulation system equations: time 0.0009069/0.04978, allocations: 1.003 MB / 0.6892 GB, free: 11.52 MB / 0.5262 GB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.001195/0.05097, allocations: 268.4 kB / 0.6894 GB, free: 11.44 MB / 0.5262 GB
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.003278/0.05425, allocations: 2.45 MB / 0.6918 GB, free: 9.402 MB / 0.5262 GB
Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0003085/0.05456, allocations: 376.2 kB / 0.6922 GB, free: 9.109 MB / 0.5262 GB
Notification: Performance of simCode: alias equations: time 0.0003719/0.05493, allocations: 92.62 kB / 0.6923 GB, free: 9.047 MB / 0.5262 GB
Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0001872/0.05512, allocations: 66.52 kB / 0.6923 GB, free: 8.984 MB / 0.5262 GB
Notification: Performance of SimCode: time 1.002e-06/0.05512, allocations: 0 / 0.6923 GB, free: 8.984 MB / 0.5262 GB
Notification: Performance of Templates: time 0.02004/0.07516, allocations: 13.43 MB / 0.7054 GB, free: 12.98 MB / 0.5418 GB
"
[Timeout remaining time 660]
make -j1 -f Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites.makefile [Timeout 660]
(rm -f Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites.sim & ./Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites -abortSlowSimulation -alarm=240  -lv LOG_STATS > Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 10.565123653039336]