Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001823/0.001823, allocations: 85.48 kB / 19.44 MB, free: 348 kB / 13.93 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001982/0.001982, allocations: 173.2 kB / 22.76 MB, free: 1.664 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.552/1.552, allocations: 177.1 MB / 203.1 MB, free: 5.574 MB / 186.7 MB
"
[Timeout remaining time 178]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180]
"[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory.
Missing names are:
	Paracetamol_Experiment
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 3.433/3.433, allocations: 274.5 MB / 0.5215 GB, free: 14.1 MB / 458.7 MB
"
[Timeout remaining time 176]
Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK,tolerance=1e-06,outputFormat="empty",numberOfIntervals=50000,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK")
translateModel(Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK,tolerance=1e-06,outputFormat="empty",numberOfIntervals=50000,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.313e-06/1.313e-06, allocations: 0 / 0.6472 GB, free: 39.16 MB / 0.5262 GB
Notification: Performance of FrontEnd - Absyn->SCode: time 2.66e-05/2.791e-05, allocations: 6.25 kB / 0.6472 GB, free: 39.15 MB / 0.5262 GB
Notification: Performance of NFInst.instantiate(Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK): time 0.001991/0.002019, allocations: 1.27 MB / 0.6485 GB, free: 38.3 MB / 0.5262 GB
Notification: Performance of NFInst.instExpressions: time 0.0002171/0.002236, allocations: 58.36 kB / 0.6485 GB, free: 38.26 MB / 0.5262 GB
Notification: Performance of NFInst.updateImplicitVariability: time 3.482e-05/0.002271, allocations: 0 / 0.6485 GB, free: 38.26 MB / 0.5262 GB
Notification: Performance of NFTyping.typeComponents: time 9.103e-05/0.002362, allocations: 5.375 kB / 0.6485 GB, free: 38.26 MB / 0.5262 GB
Notification: Performance of NFTyping.typeBindings: time 4.483e-05/0.002407, allocations: 6.406 kB / 0.6485 GB, free: 38.26 MB / 0.5262 GB
Notification: Performance of NFTyping.typeClassSections: time 0.0001633/0.00257, allocations: 12.84 kB / 0.6485 GB, free: 38.25 MB / 0.5262 GB
Notification: Performance of NFFlatten.flatten: time 0.0001658/0.002736, allocations: 153.4 kB / 0.6487 GB, free: 38.21 MB / 0.5262 GB
Notification: Performance of NFFlatten.resolveConnections: time 3.777e-05/0.002774, allocations: 2 kB / 0.6487 GB, free: 38.21 MB / 0.5262 GB
Notification: Performance of NFEvalConstants.evaluate: time 0.0001367/0.00291, allocations: 73.72 kB / 0.6488 GB, free: 38.2 MB / 0.5262 GB
Notification: Performance of NFSimplifyModel.simplify: time 0.0001602/0.003071, allocations: 82.69 kB / 0.6488 GB, free: 38.18 MB / 0.5262 GB
Notification: Performance of NFPackage.collectConstants: time 3.357e-05/0.003104, allocations: 7.5 kB / 0.6488 GB, free: 38.18 MB / 0.5262 GB
Notification: Performance of NFFlatten.collectFunctions: time 2.326e-05/0.003127, allocations: 10.28 kB / 0.6489 GB, free: 38.18 MB / 0.5262 GB
Notification: Performance of NFScalarize.scalarize: time 4.203e-05/0.003169, allocations: 32.28 kB / 0.6489 GB, free: 38.17 MB / 0.5262 GB
Notification: Performance of NFVerifyModel.verify: time 4.805e-05/0.003217, allocations: 29.7 kB / 0.6489 GB, free: 38.16 MB / 0.5262 GB
Notification: Performance of NFConvertDAE.convert: time 0.0001462/0.003364, allocations: 95.7 kB / 0.649 GB, free: 38.13 MB / 0.5262 GB
Notification: Performance of FrontEnd - DAE generated: time 1.924e-06/0.003366, allocations: 1.422 kB / 0.649 GB, free: 38.13 MB / 0.5262 GB
Notification: Performance of FrontEnd: time 4.61e-07/0.003366, allocations: 1.094 kB / 0.649 GB, free: 38.13 MB / 0.5262 GB
Notification: Performance of Transformations before backend: time 4.369e-06/0.00337, allocations: 0 / 0.649 GB, free: 38.13 MB / 0.5262 GB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 12
 * Number of variables: 12
Notification: Performance of Generate backend data structure: time 0.001693/0.005063, allocations: 0.593 MB / 0.6496 GB, free: 37.75 MB / 0.5262 GB
Notification: Performance of prepare preOptimizeDAE: time 3.396e-05/0.005097, allocations: 9.406 kB / 0.6496 GB, free: 37.75 MB / 0.5262 GB
Notification: Performance of preOpt normalInlineFunction (simulation): time 6.176e-05/0.005159, allocations: 10.64 kB / 0.6496 GB, free: 37.75 MB / 0.5262 GB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.0001577/0.005317, allocations: 131.3 kB / 0.6497 GB, free: 37.61 MB / 0.5262 GB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 1.64e-05/0.005333, allocations: 10.41 kB / 0.6497 GB, free: 37.6 MB / 0.5262 GB
Notification: Performance of preOpt expandDerOperator (simulation): time 2.071e-05/0.005354, allocations: 5.281 kB / 0.6497 GB, free: 37.6 MB / 0.5262 GB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.0004279/0.005782, allocations: 146 kB / 0.6499 GB, free: 37.54 MB / 0.5262 GB
Notification: Performance of preOpt findStateOrder (simulation): time 1.015e-05/0.005792, allocations: 3.625 kB / 0.6499 GB, free: 37.54 MB / 0.5262 GB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 1.772e-05/0.00581, allocations: 4.375 kB / 0.6499 GB, free: 37.54 MB / 0.5262 GB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 4.779e-06/0.005814, allocations: 6.344 kB / 0.6499 GB, free: 37.53 MB / 0.5262 GB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0005995/0.006414, allocations: 130.2 kB / 0.65 GB, free: 37.53 MB / 0.5262 GB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.0002619/0.006676, allocations: 280.2 kB / 0.6503 GB, free: 37.24 MB / 0.5262 GB
Notification: Performance of preOpt comSubExp (simulation): time 0.0003312/0.007007, allocations: 92.48 kB / 0.6504 GB, free: 37.2 MB / 0.5262 GB
Notification: Performance of preOpt resolveLoops (simulation): time 0.000327/0.007334, allocations: 92.98 kB / 0.6505 GB, free: 37.18 MB / 0.5262 GB
Notification: Performance of preOpt evalFunc (simulation): time 2.156e-05/0.007356, allocations: 5.562 kB / 0.6505 GB, free: 37.18 MB / 0.5262 GB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 1.61e-05/0.007372, allocations: 41.12 kB / 0.6505 GB, free: 37.13 MB / 0.5262 GB
Notification: Performance of pre-optimization done (n=11): time 1.012e-06/0.007373, allocations: 2.844 kB / 0.6505 GB, free: 37.13 MB / 0.5262 GB
Notification: Performance of matching and sorting (n=11): time 0.001051/0.008424, allocations: 260.6 kB / 0.6508 GB, free: 37.08 MB / 0.5262 GB
Notification: Performance of inlineWhenForInitialization (initialization): time 2.471e-05/0.008449, allocations: 51.41 kB / 0.6508 GB, free: 37.02 MB / 0.5262 GB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 8.147e-05/0.00853, allocations: 175 kB / 0.651 GB, free: 36.85 MB / 0.5262 GB
Notification: Performance of collectPreVariables (initialization): time 1.645e-05/0.008547, allocations: 31.02 kB / 0.651 GB, free: 36.82 MB / 0.5262 GB
Notification: Performance of collectInitialEqns (initialization): time 4.97e-05/0.008596, allocations: 132.6 kB / 0.6511 GB, free: 36.68 MB / 0.5262 GB
Notification: Performance of collectInitialBindings (initialization): time 2.863e-05/0.008625, allocations: 39.3 kB / 0.6512 GB, free: 36.65 MB / 0.5262 GB
Notification: Performance of simplifyInitialFunctions (initialization): time 6.939e-05/0.008694, allocations: 35.92 kB / 0.6512 GB, free: 36.62 MB / 0.5262 GB
Notification: Performance of setup shared object (initialization): time 8.612e-05/0.008781, allocations: 498.3 kB / 0.6517 GB, free: 36.12 MB / 0.5262 GB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.000308/0.009089, allocations: 67.94 kB / 0.6517 GB, free: 36.12 MB / 0.5262 GB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.0003161/0.009405, allocations: 96.06 kB / 0.6518 GB, free: 36.09 MB / 0.5262 GB
Notification: Performance of analyzeInitialSystem (initialization): time 0.0005956/0.01, allocations: 162.9 kB / 0.652 GB, free: 36.05 MB / 0.5262 GB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 1.974e-06/0.01, allocations: 1.688 kB / 0.652 GB, free: 36.05 MB / 0.5262 GB
Notification: Performance of matching and sorting (n=12) (initialization): time 0.0006981/0.0107, allocations: 198.9 kB / 0.6522 GB, free: 36 MB / 0.5262 GB
Notification: Performance of prepare postOptimizeDAE: time 1.682e-05/0.01072, allocations: 9.812 kB / 0.6522 GB, free: 36 MB / 0.5262 GB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 5.59e-06/0.01072, allocations: 0 / 0.6522 GB, free: 36 MB / 0.5262 GB
Notification: Performance of postOpt tearingSystem (initialization): time 1.806e-05/0.01074, allocations: 3.156 kB / 0.6522 GB, free: 36 MB / 0.5262 GB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0004373/0.01118, allocations: 75.19 kB / 0.6523 GB, free: 35.99 MB / 0.5262 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 6.582e-06/0.01118, allocations: 0 / 0.6523 GB, free: 35.99 MB / 0.5262 GB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0003241/0.01151, allocations: 63.48 kB / 0.6523 GB, free: 35.98 MB / 0.5262 GB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 1.835e-05/0.01153, allocations: 1.812 kB / 0.6523 GB, free: 35.98 MB / 0.5262 GB
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 2
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (12):
 * Single equations (assignments): 12
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of prepare postOptimizeDAE: time 7.384e-05/0.0116, allocations: 164.5 kB / 0.6525 GB, free: 35.81 MB / 0.5262 GB
Notification: Performance of postOpt lateInlineFunction (simulation): time 3.113e-05/0.01163, allocations: 13.7 kB / 0.6525 GB, free: 35.8 MB / 0.5262 GB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.000879/0.01251, allocations: 277.7 kB / 0.6528 GB, free: 35.71 MB / 0.5262 GB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 7.364e-06/0.01252, allocations: 6.719 kB / 0.6528 GB, free: 35.71 MB / 0.5262 GB
Notification: Performance of postOpt constantLinearSystem (simulation): time 3.597e-06/0.01252, allocations: 0 / 0.6528 GB, free: 35.71 MB / 0.5262 GB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 5.129e-06/0.01253, allocations: 3.984 kB / 0.6528 GB, free: 35.71 MB / 0.5262 GB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.0001607/0.01269, allocations: 164.2 kB / 0.6529 GB, free: 35.54 MB / 0.5262 GB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 1.523e-06/0.01269, allocations: 0.5 kB / 0.6529 GB, free: 35.54 MB / 0.5262 GB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0004542/0.01314, allocations: 90.97 kB / 0.653 GB, free: 35.53 MB / 0.5262 GB
Notification: Performance of postOpt tearingSystem (simulation): time 2.424e-06/0.01315, allocations: 0 / 0.653 GB, free: 35.53 MB / 0.5262 GB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 1.782e-05/0.01316, allocations: 1.625 kB / 0.653 GB, free: 35.53 MB / 0.5262 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 3.085e-06/0.01317, allocations: 6.156 kB / 0.653 GB, free: 35.53 MB / 0.5262 GB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 1.002e-06/0.01317, allocations: 0 / 0.653 GB, free: 35.53 MB / 0.5262 GB
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.0007107/0.01388, allocations: 280.8 kB / 0.6533 GB, free: 35.41 MB / 0.5262 GB
Notification: Performance of postOpt removeConstants (simulation): time 1.663e-05/0.0139, allocations: 15.25 kB / 0.6533 GB, free: 35.39 MB / 0.5262 GB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 3.258e-05/0.01393, allocations: 13.14 kB / 0.6533 GB, free: 35.39 MB / 0.5262 GB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0003159/0.01424, allocations: 58.06 kB / 0.6534 GB, free: 35.38 MB / 0.5262 GB
Notification: Performance of postOpt findZeroCrossings (simulation): time 8.666e-05/0.01433, allocations: 27.72 kB / 0.6534 GB, free: 35.37 MB / 0.5262 GB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 1.672e-05/0.01435, allocations: 7.844 kB / 0.6534 GB, free: 35.37 MB / 0.5262 GB
Notification: Performance of sorting global known variables: time 3.375e-05/0.01438, allocations: 132.2 kB / 0.6535 GB, free: 35.25 MB / 0.5262 GB
Notification: Performance of sort global known variables: time 6e-08/0.01438, allocations: 0 / 0.6535 GB, free: 35.25 MB / 0.5262 GB
Notification: Performance of remove unused functions: time 0.000205/0.01459, allocations: 30.56 kB / 0.6536 GB, free: 35.25 MB / 0.5262 GB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 1
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (21):
 * Single equations (assignments): 21
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of Backend phase and start with SimCode phase: time 7.681e-05/0.01466, allocations: 97 kB / 0.6537 GB, free: 35.16 MB / 0.5262 GB
Notification: Performance of simCode: created initialization part: time 0.0007953/0.01546, allocations: 186.2 kB / 0.6538 GB, free: 35.12 MB / 0.5262 GB
Notification: Performance of simCode: created event and clocks part: time 1.553e-06/0.01546, allocations: 0 / 0.6538 GB, free: 35.12 MB / 0.5262 GB
Notification: Performance of simCode: created simulation system equations: time 0.0004337/0.01589, allocations: 118.2 kB / 0.6539 GB, free: 35.09 MB / 0.5262 GB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.000223/0.01612, allocations: 19.89 kB / 0.654 GB, free: 35.09 MB / 0.5262 GB
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.0005826/0.0167, allocations: 239.9 kB / 0.6542 GB, free: 34.92 MB / 0.5262 GB
Notification: Performance of simCode: some other stuff during SimCode phase: time 8.187e-05/0.01678, allocations: 88.38 kB / 0.6543 GB, free: 34.85 MB / 0.5262 GB
Notification: Performance of simCode: alias equations: time 0.0001274/0.01691, allocations: 35.09 kB / 0.6543 GB, free: 34.84 MB / 0.5262 GB
Notification: Performance of simCode: all other stuff during SimCode phase: time 0.00014/0.01705, allocations: 22.44 kB / 0.6543 GB, free: 34.82 MB / 0.5262 GB
Notification: Performance of SimCode: time 6.31e-07/0.01705, allocations: 0 / 0.6543 GB, free: 34.82 MB / 0.5262 GB
Notification: Performance of Templates: time 0.005785/0.02283, allocations: 2.882 MB / 0.6571 GB, free: 34.59 MB / 0.5262 GB
"
[Timeout remaining time 660]
make -j1 -f Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.makefile [Timeout 660]
(rm -f Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.sim & ./Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK -abortSlowSimulation -alarm=240  -lv LOG_STATS > Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 8.445072873029858]