Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.002264/0.002264, allocations: 93.47 kB / 19.44 MB, free: 336 kB / 13.93 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.002781/0.002781, allocations: 169.2 kB / 22.76 MB, free: 1.664 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.625/1.625, allocations: 177.1 MB / 203.1 MB, free: 5.258 MB / 186.7 MB
"
[Timeout remaining time 178]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180]
"[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory.
Missing names are:
	Paracetamol_Experiment
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 3.406/3.406, allocations: 274.5 MB / 0.5215 GB, free: 14.28 MB / 458.7 MB
"
[Timeout remaining time 176]
Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1,tolerance=1e-06,outputFormat="empty",numberOfIntervals=500,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1")
translateModel(Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1,tolerance=1e-06,outputFormat="empty",numberOfIntervals=500,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.543e-06/1.543e-06, allocations: 0 / 0.6472 GB, free: 39.24 MB / 0.5262 GB
Notification: Performance of FrontEnd - Absyn->SCode: time 1.981e-05/2.135e-05, allocations: 2.312 kB / 0.6472 GB, free: 39.23 MB / 0.5262 GB
Notification: Performance of NFInst.instantiate(Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1): time 0.00125/0.001271, allocations: 0.5218 MB / 0.6477 GB, free: 38.95 MB / 0.5262 GB
Notification: Performance of NFInst.instExpressions: time 0.0001296/0.001401, allocations: 19.69 kB / 0.6477 GB, free: 38.94 MB / 0.5262 GB
Notification: Performance of NFInst.updateImplicitVariability: time 2.554e-05/0.001426, allocations: 1.156 kB / 0.6477 GB, free: 38.94 MB / 0.5262 GB
Notification: Performance of NFTyping.typeComponents: time 1.13e-05/0.001438, allocations: 5.219 kB / 0.6477 GB, free: 38.94 MB / 0.5262 GB
Notification: Performance of NFTyping.typeBindings: time 4.294e-05/0.001481, allocations: 1.422 kB / 0.6477 GB, free: 38.94 MB / 0.5262 GB
Notification: Performance of NFTyping.typeClassSections: time 8.622e-05/0.001567, allocations: 10.98 kB / 0.6478 GB, free: 38.93 MB / 0.5262 GB
Notification: Performance of NFFlatten.flatten: time 4.603e-05/0.001613, allocations: 19.39 kB / 0.6478 GB, free: 38.93 MB / 0.5262 GB
Notification: Performance of NFFlatten.resolveConnections: time 3.603e-05/0.001649, allocations: 2.469 kB / 0.6478 GB, free: 38.93 MB / 0.5262 GB
Notification: Performance of NFEvalConstants.evaluate: time 3.519e-05/0.001684, allocations: 9.562 kB / 0.6478 GB, free: 38.93 MB / 0.5262 GB
Notification: Performance of NFSimplifyModel.simplify: time 7.582e-05/0.00176, allocations: 15.77 kB / 0.6478 GB, free: 38.92 MB / 0.5262 GB
Notification: Performance of NFPackage.collectConstants: time 1.532e-05/0.001775, allocations: 4.281 kB / 0.6478 GB, free: 38.92 MB / 0.5262 GB
Notification: Performance of NFFlatten.collectFunctions: time 8.035e-06/0.001783, allocations: 0 / 0.6478 GB, free: 38.92 MB / 0.5262 GB
Notification: Performance of NFScalarize.scalarize: time 1.282e-05/0.001796, allocations: 1.312 kB / 0.6478 GB, free: 38.92 MB / 0.5262 GB
Notification: Performance of NFVerifyModel.verify: time 1.694e-05/0.001813, allocations: 6.625 kB / 0.6478 GB, free: 38.92 MB / 0.5262 GB
Notification: Performance of NFConvertDAE.convert: time 5.379e-05/0.001867, allocations: 20.78 kB / 0.6478 GB, free: 38.91 MB / 0.5262 GB
Notification: Performance of FrontEnd - DAE generated: time 1.773e-06/0.001869, allocations: 1.281 kB / 0.6478 GB, free: 38.91 MB / 0.5262 GB
Notification: Performance of FrontEnd: time 5.51e-07/0.001869, allocations: 0 / 0.6478 GB, free: 38.91 MB / 0.5262 GB
Notification: Performance of Transformations before backend: time 2.876e-06/0.001872, allocations: 0 / 0.6478 GB, free: 38.91 MB / 0.5262 GB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 3
 * Number of variables: 3
Notification: Performance of Generate backend data structure: time 0.000308/0.00218, allocations: 361.6 kB / 0.6482 GB, free: 38.54 MB / 0.5262 GB
Notification: Performance of prepare preOptimizeDAE: time 2.906e-05/0.002209, allocations: 9.156 kB / 0.6482 GB, free: 38.54 MB / 0.5262 GB
Notification: Performance of preOpt normalInlineFunction (simulation): time 3.722e-05/0.002246, allocations: 10.25 kB / 0.6482 GB, free: 38.54 MB / 0.5262 GB
Notification: Performance of preOpt evaluateParameters (simulation): time 5.888e-05/0.002305, allocations: 116.3 kB / 0.6483 GB, free: 38.4 MB / 0.5262 GB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 1.049e-05/0.002316, allocations: 2.844 kB / 0.6483 GB, free: 38.4 MB / 0.5262 GB
Notification: Performance of preOpt expandDerOperator (simulation): time 1.731e-05/0.002333, allocations: 4.328 kB / 0.6483 GB, free: 38.4 MB / 0.5262 GB
Notification: Performance of preOpt clockPartitioning (simulation): time 7.55e-05/0.002408, allocations: 41.3 kB / 0.6484 GB, free: 38.36 MB / 0.5262 GB
Notification: Performance of preOpt findStateOrder (simulation): time 7.604e-06/0.002416, allocations: 192 / 0.6484 GB, free: 38.36 MB / 0.5262 GB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 7.104e-06/0.002423, allocations: 2.469 kB / 0.6484 GB, free: 38.36 MB / 0.5262 GB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 3.497e-06/0.002427, allocations: 1.5 kB / 0.6484 GB, free: 38.36 MB / 0.5262 GB
Notification: Performance of preOpt removeEqualRHS (simulation): time 2.253e-05/0.002449, allocations: 16.5 kB / 0.6484 GB, free: 38.36 MB / 0.5262 GB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.0001079/0.002557, allocations: 113.4 kB / 0.6485 GB, free: 38.21 MB / 0.5262 GB
Notification: Performance of preOpt comSubExp (simulation): time 0.000315/0.002872, allocations: 68.75 kB / 0.6485 GB, free: 38.18 MB / 0.5262 GB
Notification: Performance of preOpt resolveLoops (simulation): time 2.327e-05/0.002895, allocations: 20.33 kB / 0.6486 GB, free: 38.16 MB / 0.5262 GB
Notification: Performance of preOpt evalFunc (simulation): time 8.295e-06/0.002904, allocations: 1.031 kB / 0.6486 GB, free: 38.16 MB / 0.5262 GB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 1.296e-05/0.002917, allocations: 35.3 kB / 0.6486 GB, free: 38.12 MB / 0.5262 GB
Notification: Performance of pre-optimization done (n=3): time 1.001e-06/0.002918, allocations: 1.344 kB / 0.6486 GB, free: 38.12 MB / 0.5262 GB
Notification: Performance of matching and sorting (n=3): time 0.0001501/0.003068, allocations: 57.06 kB / 0.6487 GB, free: 38.08 MB / 0.5262 GB
Notification: Performance of inlineWhenForInitialization (initialization): time 2.264e-05/0.00309, allocations: 51.41 kB / 0.6487 GB, free: 38.02 MB / 0.5262 GB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 5.031e-05/0.003141, allocations: 167.5 kB / 0.6489 GB, free: 37.84 MB / 0.5262 GB
Notification: Performance of collectPreVariables (initialization): time 6.312e-06/0.003147, allocations: 28.52 kB / 0.6489 GB, free: 37.81 MB / 0.5262 GB
Notification: Performance of collectInitialEqns (initialization): time 2.222e-05/0.003169, allocations: 135 kB / 0.649 GB, free: 37.68 MB / 0.5262 GB
Notification: Performance of collectInitialBindings (initialization): time 2.17e-05/0.003191, allocations: 9.938 kB / 0.649 GB, free: 37.67 MB / 0.5262 GB
Notification: Performance of simplifyInitialFunctions (initialization): time 3.19e-05/0.003223, allocations: 23.78 kB / 0.6491 GB, free: 37.64 MB / 0.5262 GB
Notification: Performance of setup shared object (initialization): time 5.697e-05/0.00328, allocations: 0.4928 MB / 0.6495 GB, free: 37.15 MB / 0.5262 GB
Notification: Performance of preBalanceInitialSystem (initialization): time 1.963e-05/0.003299, allocations: 4.75 kB / 0.6495 GB, free: 37.15 MB / 0.5262 GB
Notification: Performance of partitionIndependentBlocks (initialization): time 1.5e-05/0.003314, allocations: 4.75 kB / 0.6495 GB, free: 37.15 MB / 0.5262 GB
Notification: Performance of analyzeInitialSystem (initialization): time 6.968e-05/0.003384, allocations: 48.02 kB / 0.6496 GB, free: 37.12 MB / 0.5262 GB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 1.202e-06/0.003385, allocations: 0 / 0.6496 GB, free: 37.12 MB / 0.5262 GB
Notification: Performance of matching and sorting (n=6) (initialization): time 8.021e-05/0.003466, allocations: 72.31 kB / 0.6497 GB, free: 37.07 MB / 0.5262 GB
Notification: Performance of prepare postOptimizeDAE: time 1.37e-05/0.003479, allocations: 6.312 kB / 0.6497 GB, free: 37.07 MB / 0.5262 GB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 5.791e-06/0.003485, allocations: 3.188 kB / 0.6497 GB, free: 37.07 MB / 0.5262 GB
Notification: Performance of postOpt tearingSystem (initialization): time 1.236e-05/0.003497, allocations: 0.75 kB / 0.6497 GB, free: 37.07 MB / 0.5262 GB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 7.193e-05/0.003569, allocations: 8.5 kB / 0.6497 GB, free: 37.07 MB / 0.5262 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 4.358e-06/0.003574, allocations: 1.25 kB / 0.6497 GB, free: 37.07 MB / 0.5262 GB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 2.327e-05/0.003597, allocations: 5.094 kB / 0.6497 GB, free: 37.07 MB / 0.5262 GB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 6.292e-06/0.003603, allocations: 2.406 kB / 0.6497 GB, free: 37.07 MB / 0.5262 GB
Warning: Assuming fixed start value for the following 3 variables:
         V:VARIABLE(start = 10.0 fixed = true )  \"count of viral particles\" type: Real
         I:VARIABLE(start = 0.0 fixed = true )  \"count of infectious cells\" type: Real
         T:VARIABLE(start = 1e6 fixed = true )  \"count of target(susceptible) cells\" type: Real
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 1
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (6):
 * Single equations (assignments): 6
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of prepare postOptimizeDAE: time 8.38e-05/0.003687, allocations: 175.6 kB / 0.6499 GB, free: 36.9 MB / 0.5262 GB
Notification: Performance of postOpt lateInlineFunction (simulation): time 1.027e-05/0.003697, allocations: 1.469 kB / 0.6499 GB, free: 36.9 MB / 0.5262 GB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 2.252e-05/0.00372, allocations: 3.688 kB / 0.6499 GB, free: 36.89 MB / 0.5262 GB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 1.142e-06/0.003721, allocations: 1.938 kB / 0.6499 GB, free: 36.89 MB / 0.5262 GB
Notification: Performance of postOpt constantLinearSystem (simulation): time 2.625e-06/0.003724, allocations: 1.25 kB / 0.6499 GB, free: 36.89 MB / 0.5262 GB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 3.116e-06/0.003727, allocations: 3.938 kB / 0.6499 GB, free: 36.89 MB / 0.5262 GB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 5.314e-05/0.00378, allocations: 117.7 kB / 0.65 GB, free: 36.75 MB / 0.5262 GB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 8.21e-07/0.003781, allocations: 1.656 kB / 0.65 GB, free: 36.75 MB / 0.5262 GB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 6.028e-05/0.003841, allocations: 8.797 kB / 0.65 GB, free: 36.75 MB / 0.5262 GB
Notification: Performance of postOpt tearingSystem (simulation): time 1.483e-06/0.003842, allocations: 0 / 0.65 GB, free: 36.75 MB / 0.5262 GB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 7.584e-06/0.00385, allocations: 4 kB / 0.65 GB, free: 36.74 MB / 0.5262 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 1.082e-06/0.003851, allocations: 3.891 kB / 0.65 GB, free: 36.74 MB / 0.5262 GB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 7.01e-07/0.003852, allocations: 2.25 kB / 0.65 GB, free: 36.74 MB / 0.5262 GB
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.0001091/0.003961, allocations: 107.4 kB / 0.6501 GB, free: 36.65 MB / 0.5262 GB
Notification: Performance of postOpt removeConstants (simulation): time 6.532e-06/0.003967, allocations: 5.406 kB / 0.6501 GB, free: 36.64 MB / 0.5262 GB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 1.136e-05/0.003979, allocations: 2.188 kB / 0.6501 GB, free: 36.64 MB / 0.5262 GB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 2.535e-05/0.004004, allocations: 0 / 0.6501 GB, free: 36.64 MB / 0.5262 GB
Notification: Performance of postOpt findZeroCrossings (simulation): time 1.829e-05/0.004022, allocations: 3.469 kB / 0.6501 GB, free: 36.64 MB / 0.5262 GB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 3.847e-06/0.004026, allocations: 3.188 kB / 0.6501 GB, free: 36.64 MB / 0.5262 GB
Notification: Performance of sorting global known variables: time 2.251e-05/0.004049, allocations: 122.8 kB / 0.6502 GB, free: 36.53 MB / 0.5262 GB
Notification: Performance of sort global known variables: time 6e-08/0.004049, allocations: 0 / 0.6502 GB, free: 36.53 MB / 0.5262 GB
Notification: Performance of remove unused functions: time 0.000174/0.004223, allocations: 15.22 kB / 0.6502 GB, free: 36.52 MB / 0.5262 GB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 1
 * Number of states: 3 (V,I,T)
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (3):
 * Single equations (assignments): 3
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of Backend phase and start with SimCode phase: time 6.231e-05/0.004285, allocations: 93.12 kB / 0.6503 GB, free: 36.43 MB / 0.5262 GB
Notification: Performance of simCode: created initialization part: time 9.328e-05/0.004378, allocations: 34.05 kB / 0.6504 GB, free: 36.42 MB / 0.5262 GB
Notification: Performance of simCode: created event and clocks part: time 2.695e-06/0.004381, allocations: 3.594 kB / 0.6504 GB, free: 36.42 MB / 0.5262 GB
Notification: Performance of simCode: created simulation system equations: time 2.049e-05/0.004402, allocations: 22.28 kB / 0.6504 GB, free: 36.4 MB / 0.5262 GB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0001438/0.004545, allocations: 6.656 kB / 0.6504 GB, free: 36.4 MB / 0.5262 GB
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.0002038/0.004749, allocations: 153.4 kB / 0.6505 GB, free: 36.25 MB / 0.5262 GB
Notification: Performance of simCode: some other stuff during SimCode phase: time 3.147e-05/0.004781, allocations: 69.61 kB / 0.6506 GB, free: 36.18 MB / 0.5262 GB
Notification: Performance of simCode: alias equations: time 1.494e-05/0.004796, allocations: 7.469 kB / 0.6506 GB, free: 36.18 MB / 0.5262 GB
Notification: Performance of simCode: all other stuff during SimCode phase: time 2.12e-05/0.004817, allocations: 10.5 kB / 0.6506 GB, free: 36.17 MB / 0.5262 GB
Notification: Performance of SimCode: time 4e-07/0.004817, allocations: 1.125 kB / 0.6506 GB, free: 36.17 MB / 0.5262 GB
Notification: Performance of Templates: time 0.002588/0.007405, allocations: 361.6 kB / 0.651 GB, free: 36.12 MB / 0.5262 GB
"
[Timeout remaining time 660]
make -j1 -f Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1.makefile [Timeout 660]
(rm -f Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1.sim & ./Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1 -abortSlowSimulation -alarm=240  -lv LOG_STATS > Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 8.238128941040486]