Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_master_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.002368/0.002368, allocations: 85.48 kB / 19.44 MB, free: 344 kB / 13.93 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.002751/0.002751, allocations: 173.2 kB / 22.76 MB, free: 1.664 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.608/1.608, allocations: 177.1 MB / 203.1 MB, free: 5.285 MB / 186.7 MB
"
[Timeout remaining time 178]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo): time 0.1538/0.1538, allocations: 17.44 MB / 277 MB, free: 11.51 MB / 266.7 MB
"
[Timeout remaining time 180]
Using package Chemical with version 2.0.1 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG")
translateModel(Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.342e-06/1.342e-06, allocations: 0 / 352.8 MB, free: 10.23 MB / 282.7 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 3.025e-05/3.159e-05, allocations: 6.312 kB / 352.8 MB, free: 10.22 MB / 282.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Obsolete.mo:12638:6-12638:65:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Obsolete.mo:12638:6-12638:65:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"system\" component but
an inner \"system\" component is not defined.
For simulation drag Modelica.Fluid.System into your model
to specify system properties.
Notification: Performance of NFInst.instantiate(Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG): time 0.03896/0.03899, allocations: 24.58 MB / 377.4 MB, free: 1.773 MB / 298.7 MB
Notification: Performance of NFInst.instExpressions: time 0.009925/0.04892, allocations: 6.309 MB / 383.7 MB, free: 11.44 MB / 314.7 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.0004122/0.04933, allocations: 11.88 kB / 383.7 MB, free: 11.43 MB / 314.7 MB
Notification: Performance of NFTyping.typeComponents: time 0.0005857/0.04992, allocations: 146.8 kB / 383.9 MB, free: 11.28 MB / 314.7 MB
Notification: Performance of NFTyping.typeBindings: time 0.0007991/0.05071, allocations: 273.8 kB / 384.1 MB, free: 11.01 MB / 314.7 MB
Notification: Performance of NFTyping.typeClassSections: time 0.002749/0.05346, allocations: 1.009 MB / 385.2 MB, free: 9.996 MB / 314.7 MB
Notification: Performance of NFFlatten.flatten: time 0.0008279/0.05429, allocations: 0.5252 MB / 385.7 MB, free: 9.469 MB / 314.7 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.0003621/0.05465, allocations: 169.1 kB / 385.8 MB, free: 9.301 MB / 314.7 MB
Notification: Performance of NFEvalConstants.evaluate: time 0.0004763/0.05513, allocations: 323.3 kB / 386.2 MB, free: 8.984 MB / 314.7 MB
Notification: Performance of NFSimplifyModel.simplify: time 0.0004492/0.05558, allocations: 231.5 kB / 386.4 MB, free: 8.758 MB / 314.7 MB
Notification: Performance of NFPackage.collectConstants: time 8.634e-05/0.05567, allocations: 32 kB / 386.4 MB, free: 8.727 MB / 314.7 MB
Notification: Performance of NFFlatten.collectFunctions: time 0.001446/0.05711, allocations: 0.5224 MB / 386.9 MB, free: 8.203 MB / 314.7 MB
Notification: Performance of NFScalarize.scalarize: time 0.0001514/0.05726, allocations: 95.66 kB / 387 MB, free: 8.109 MB / 314.7 MB
Notification: Performance of NFVerifyModel.verify: time 0.0002106/0.05747, allocations: 143.6 kB / 387.2 MB, free: 7.969 MB / 314.7 MB
Notification: Performance of NFConvertDAE.convert: time 0.001911/0.05938, allocations: 1.148 MB / 388.3 MB, free: 6.816 MB / 314.7 MB
Notification: Performance of FrontEnd - DAE generated: time 4.889e-06/0.05939, allocations: 0 / 388.3 MB, free: 6.816 MB / 314.7 MB
Notification: Performance of FrontEnd: time 1.383e-06/0.05939, allocations: 0 / 388.3 MB, free: 6.816 MB / 314.7 MB
Notification: Performance of Transformations before backend: time 9.197e-06/0.0594, allocations: 0 / 388.3 MB, free: 6.816 MB / 314.7 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 65
 * Number of variables: 65
Notification: Performance of Generate backend data structure: time 0.0014/0.0608, allocations: 0.8569 MB / 389.2 MB, free: 5.918 MB / 314.7 MB
Notification: Performance of prepare preOptimizeDAE: time 3.962e-05/0.06084, allocations: 8.031 kB / 389.2 MB, free: 5.91 MB / 314.7 MB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.000674/0.06151, allocations: 183.7 kB / 389.4 MB, free: 5.73 MB / 314.7 MB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.0006604/0.06217, allocations: 352.2 kB / 389.7 MB, free: 5.359 MB / 314.7 MB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 2.727e-05/0.0622, allocations: 21.03 kB / 389.7 MB, free: 5.34 MB / 314.7 MB
Notification: Performance of preOpt expandDerOperator (simulation): time 6.445e-05/0.06227, allocations: 24.38 kB / 389.8 MB, free: 5.316 MB / 314.7 MB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.0008036/0.06307, allocations: 472.3 kB / 390.2 MB, free: 4.809 MB / 314.7 MB
Notification: Performance of preOpt findStateOrder (simulation): time 1.618e-05/0.06309, allocations: 3.938 kB / 390.2 MB, free: 4.805 MB / 314.7 MB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 4.318e-05/0.06313, allocations: 12 kB / 390.2 MB, free: 4.793 MB / 314.7 MB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 8.516e-06/0.06314, allocations: 4 kB / 390.2 MB, free: 4.789 MB / 314.7 MB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0009795/0.06412, allocations: 0.5522 MB / 390.8 MB, free: 4.23 MB / 314.7 MB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.002961/0.06708, allocations: 2.125 MB / 392.9 MB, free: 2.023 MB / 314.7 MB
Notification: Performance of preOpt comSubExp (simulation): time 0.0003363/0.06741, allocations: 139 kB / 393 MB, free: 1.875 MB / 314.7 MB
Notification: Performance of preOpt resolveLoops (simulation): time 0.0001655/0.06758, allocations: 75.66 kB / 393.1 MB, free: 1.797 MB / 314.7 MB
Notification: Performance of preOpt evalFunc (simulation): time 0.0021/0.06968, allocations: 1.03 MB / 394.2 MB, free: 0.7461 MB / 314.7 MB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 3.682e-05/0.06972, allocations: 41.39 kB / 394.2 MB, free: 0.6953 MB / 314.7 MB
Notification: Performance of pre-optimization done (n=9): time 1.022e-06/0.06972, allocations: 0 / 394.2 MB, free: 0.6953 MB / 314.7 MB
Notification: Performance of matching and sorting (n=9): time 0.0004525/0.07017, allocations: 165.4 kB / 394.4 MB, free: 0.5273 MB / 314.7 MB
Notification: Performance of inlineWhenForInitialization (initialization): time 5.433e-05/0.07022, allocations: 59.39 kB / 394.4 MB, free: 468 kB / 314.7 MB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0006135/0.07084, allocations: 0.4986 MB / 394.9 MB, free: 15.94 MB / 330.7 MB
Notification: Performance of collectPreVariables (initialization): time 2.676e-05/0.07086, allocations: 25.7 kB / 394.9 MB, free: 15.91 MB / 330.7 MB
Notification: Performance of collectInitialEqns (initialization): time 0.0002981/0.07116, allocations: 342.2 kB / 395.3 MB, free: 15.57 MB / 330.7 MB
Notification: Performance of collectInitialBindings (initialization): time 4.255e-05/0.0712, allocations: 35.73 kB / 395.3 MB, free: 15.54 MB / 330.7 MB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.0001459/0.07135, allocations: 91.27 kB / 395.4 MB, free: 15.44 MB / 330.7 MB
Notification: Performance of setup shared object (initialization): time 0.000471/0.07182, allocations: 0.5432 MB / 395.9 MB, free: 14.88 MB / 330.7 MB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.0001304/0.07195, allocations: 55.97 kB / 396 MB, free: 14.83 MB / 330.7 MB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.0004603/0.07241, allocations: 384.9 kB / 396.4 MB, free: 14.3 MB / 330.7 MB
Notification: Performance of analyzeInitialSystem (initialization): time 0.0006527/0.07307, allocations: 480.5 kB / 396.8 MB, free: 13.69 MB / 330.7 MB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 6.472e-06/0.07307, allocations: 4 kB / 396.8 MB, free: 13.68 MB / 330.7 MB
Notification: Performance of matching and sorting (n=38) (initialization): time 0.0006821/0.07375, allocations: 373 kB / 397.2 MB, free: 13.31 MB / 330.7 MB
Notification: Performance of prepare postOptimizeDAE: time 2.126e-05/0.07377, allocations: 8 kB / 397.2 MB, free: 13.3 MB / 330.7 MB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 1.437e-05/0.07379, allocations: 8 kB / 397.2 MB, free: 13.3 MB / 330.7 MB
Notification: Performance of postOpt tearingSystem (initialization): time 2.601e-05/0.07382, allocations: 11.98 kB / 397.2 MB, free: 13.29 MB / 330.7 MB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0002937/0.07411, allocations: 92.56 kB / 397.3 MB, free: 13.2 MB / 330.7 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 2.742e-05/0.07414, allocations: 27.86 kB / 397.4 MB, free: 13.17 MB / 330.7 MB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0002382/0.07437, allocations: 35.72 kB / 397.4 MB, free: 13.13 MB / 330.7 MB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 5.045e-05/0.07442, allocations: 28 kB / 397.4 MB, free: 13.11 MB / 330.7 MB
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 35
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (38):
 * Single equations (assignments): 38
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of prepare postOptimizeDAE: time 0.0002157/0.07464, allocations: 212.3 kB / 397.6 MB, free: 12.89 MB / 330.7 MB
Notification: Performance of postOpt lateInlineFunction (simulation): time 8.355e-05/0.07472, allocations: 39.77 kB / 397.7 MB, free: 12.85 MB / 330.7 MB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0005263/0.07525, allocations: 268.7 kB / 397.9 MB, free: 12.55 MB / 330.7 MB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 2.514e-06/0.07525, allocations: 0 / 397.9 MB, free: 12.55 MB / 330.7 MB
Notification: Performance of postOpt constantLinearSystem (simulation): time 3.587e-06/0.07526, allocations: 48 / 397.9 MB, free: 12.55 MB / 330.7 MB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 5.229e-06/0.07526, allocations: 3.984 kB / 397.9 MB, free: 12.54 MB / 330.7 MB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.0006993/0.07596, allocations: 0.59 MB / 398.5 MB, free: 11.91 MB / 330.7 MB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 1.372e-06/0.07596, allocations: 0 / 398.5 MB, free: 11.91 MB / 330.7 MB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 2.168e-05/0.07598, allocations: 0 / 398.5 MB, free: 11.91 MB / 330.7 MB
Notification: Performance of postOpt tearingSystem (simulation): time 2.615e-06/0.07599, allocations: 0 / 398.5 MB, free: 11.91 MB / 330.7 MB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 1.213e-05/0.076, allocations: 8 kB / 398.5 MB, free: 11.9 MB / 330.7 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 1.543e-06/0.076, allocations: 0 / 398.5 MB, free: 11.9 MB / 330.7 MB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 4.839e-06/0.07601, allocations: 8.047 kB / 398.5 MB, free: 11.89 MB / 330.7 MB
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.0001539/0.07616, allocations: 112.1 kB / 398.6 MB, free: 11.76 MB / 330.7 MB
Notification: Performance of postOpt removeConstants (simulation): time 6.869e-05/0.07623, allocations: 31.75 kB / 398.7 MB, free: 11.73 MB / 330.7 MB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 4.538e-05/0.07627, allocations: 0 / 398.7 MB, free: 11.73 MB / 330.7 MB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 8.181e-05/0.07636, allocations: 0 / 398.7 MB, free: 11.73 MB / 330.7 MB
Notification: Performance of postOpt findZeroCrossings (simulation): time 2.024e-05/0.07638, allocations: 0 / 398.7 MB, free: 11.73 MB / 330.7 MB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 4.499e-06/0.07638, allocations: 7.938 kB / 398.7 MB, free: 11.72 MB / 330.7 MB
Notification: Performance of sorting global known variables: time 0.000431/0.07681, allocations: 359 kB / 399 MB, free: 11.37 MB / 330.7 MB
Notification: Performance of sort global known variables: time 1.2e-07/0.07681, allocations: 4 kB / 399 MB, free: 11.36 MB / 330.7 MB
Notification: Performance of remove unused functions: time 0.0006202/0.07743, allocations: 183.3 kB / 399.2 MB, free: 11.18 MB / 330.7 MB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 1
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (1):
 * Single equations (assignments): 1
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of Backend phase and start with SimCode phase: time 0.000589/0.07802, allocations: 314.5 kB / 399.5 MB, free: 10.86 MB / 330.7 MB
Notification: Performance of simCode: created initialization part: time 0.0003452/0.07837, allocations: 165.5 kB / 399.7 MB, free: 10.7 MB / 330.7 MB
Notification: Performance of simCode: created event and clocks part: time 1.774e-06/0.07837, allocations: 0 / 399.7 MB, free: 10.7 MB / 330.7 MB
Notification: Performance of simCode: created simulation system equations: time 2.298e-05/0.07839, allocations: 12.25 kB / 399.7 MB, free: 10.68 MB / 330.7 MB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0004972/0.07889, allocations: 88.84 kB / 399.8 MB, free: 10.6 MB / 330.7 MB
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.001054/0.07994, allocations: 0.518 MB / 400.3 MB, free: 10.05 MB / 330.7 MB
Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0002195/0.08016, allocations: 193 kB / 400.5 MB, free: 9.848 MB / 330.7 MB
Notification: Performance of simCode: alias equations: time 0.0002685/0.08043, allocations: 90.17 kB / 400.6 MB, free: 9.758 MB / 330.7 MB
Notification: Performance of simCode: all other stuff during SimCode phase: time 9.661e-05/0.08053, allocations: 36.48 kB / 400.6 MB, free: 9.723 MB / 330.7 MB
Notification: Performance of SimCode: time 4.91e-07/0.08053, allocations: 0 / 400.6 MB, free: 9.723 MB / 330.7 MB
Notification: Performance of Templates: time 0.01282/0.09334, allocations: 6.17 MB / 406.8 MB, free: 3.625 MB / 330.7 MB
"
[Timeout remaining time 660]
make -j1 -f Chemical_master_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG.makefile [Timeout 660]
(rm -f Chemical_master_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG.pipe ; mkfifo Chemical_master_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG.pipe ; head -c 1048576 < Chemical_master_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG.pipe >> ../files/Chemical_master_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG.sim & ./Chemical_master_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG -abortSlowSimulation -alarm=240  -lv LOG_STATS > Chemical_master_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 5.199244466028176]