Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_master_Chemical.Obsolete.Examples.AcidBase.WaterSelfIonization.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001848/0.001848, allocations: 85.48 kB / 19.44 MB, free: 344 kB / 13.93 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001932/0.001932, allocations: 173.2 kB / 22.76 MB, free: 1.664 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.556/1.556, allocations: 177.1 MB / 203.1 MB, free: 5.641 MB / 186.7 MB
"
[Timeout remaining time 178]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo): time 0.1445/0.1445, allocations: 17.44 MB / 277 MB, free: 11.62 MB / 266.7 MB
"
[Timeout remaining time 180]
Using package Chemical with version 2.0.1 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Chemical.Obsolete.Examples.AcidBase.WaterSelfIonization,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Obsolete.Examples.AcidBase.WaterSelfIonization")
translateModel(Chemical.Obsolete.Examples.AcidBase.WaterSelfIonization,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Obsolete.Examples.AcidBase.WaterSelfIonization") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.272e-06/1.272e-06, allocations: 0 / 352.8 MB, free: 10.21 MB / 282.7 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 2.724e-05/2.851e-05, allocations: 2.312 kB / 352.8 MB, free: 10.21 MB / 282.7 MB
Notification: Performance of NFInst.instantiate(Chemical.Obsolete.Examples.AcidBase.WaterSelfIonization): time 0.01157/0.0116, allocations: 8.314 MB / 361.1 MB, free: 1.855 MB / 282.7 MB
Notification: Performance of NFInst.instExpressions: time 0.03679/0.04839, allocations: 24.33 MB / 385.5 MB, free: 9.434 MB / 314.7 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.001598/0.04999, allocations: 27.75 kB / 385.5 MB, free: 9.406 MB / 314.7 MB
Notification: Performance of NFTyping.typeComponents: time 0.001698/0.05169, allocations: 476.1 kB / 386 MB, free: 8.938 MB / 314.7 MB
Notification: Performance of NFTyping.typeBindings: time 0.00739/0.05908, allocations: 2.234 MB / 388.2 MB, free: 6.688 MB / 314.7 MB
Notification: Performance of NFTyping.typeClassSections: time 0.009445/0.06852, allocations: 3.152 MB / 391.3 MB, free: 3.516 MB / 314.7 MB
Notification: Performance of NFFlatten.flatten: time 0.004291/0.07281, allocations: 2.526 MB / 393.9 MB, free: 0.9805 MB / 314.7 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.001801/0.07462, allocations: 1.174 MB / 395 MB, free: 15.76 MB / 330.7 MB
Notification: Performance of NFEvalConstants.evaluate: time 0.002553/0.07717, allocations: 1.697 MB / 396.7 MB, free: 14.06 MB / 330.7 MB
Notification: Performance of NFSimplifyModel.simplify: time 0.001976/0.07914, allocations: 1.138 MB / 397.9 MB, free: 12.92 MB / 330.7 MB
Notification: Performance of NFPackage.collectConstants: time 0.0004072/0.07955, allocations: 212 kB / 398.1 MB, free: 12.71 MB / 330.7 MB
Notification: Performance of NFFlatten.collectFunctions: time 0.008448/0.088, allocations: 2.546 MB / 400.6 MB, free: 10.16 MB / 330.7 MB
Notification: Performance of NFScalarize.scalarize: time 0.0007676/0.08877, allocations: 0.5218 MB / 401.2 MB, free: 9.641 MB / 330.7 MB
Notification: Performance of NFVerifyModel.verify: time 0.001431/0.0902, allocations: 0.7952 MB / 402 MB, free: 8.844 MB / 330.7 MB
Notification: Performance of NFConvertDAE.convert: time 0.01441/0.1046, allocations: 5.569 MB / 407.5 MB, free: 3.254 MB / 330.7 MB
Notification: Performance of FrontEnd - DAE generated: time 5.19e-06/0.1046, allocations: 4 kB / 407.5 MB, free: 3.25 MB / 330.7 MB
Notification: Performance of FrontEnd: time 1.423e-06/0.1046, allocations: 0 / 407.5 MB, free: 3.25 MB / 330.7 MB
Notification: Performance of Transformations before backend: time 5.53e-05/0.1047, allocations: 0 / 407.5 MB, free: 3.25 MB / 330.7 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 446
 * Number of variables: 446
Notification: Performance of Generate backend data structure: time 0.006419/0.1111, allocations: 2.85 MB / 410.4 MB, free: 356 kB / 330.7 MB
Notification: Performance of prepare preOptimizeDAE: time 4.443e-05/0.1111, allocations: 16.03 kB / 410.4 MB, free: 340 kB / 330.7 MB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.1635/0.2746, allocations: 0.6781 MB / 411.1 MB, free: 65.11 MB / 330.7 MB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.002277/0.2769, allocations: 0.9181 MB / 412 MB, free: 64.87 MB / 330.7 MB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.0002136/0.2771, allocations: 243.5 kB / 412.2 MB, free: 64.74 MB / 330.7 MB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.0004/0.2775, allocations: 186.3 kB / 412.4 MB, free: 64.74 MB / 330.7 MB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.004032/0.2815, allocations: 2.138 MB / 414.5 MB, free: 64.03 MB / 330.7 MB
Notification: Performance of preOpt findStateOrder (simulation): time 4.194e-05/0.2816, allocations: 0.8438 kB / 414.5 MB, free: 64.03 MB / 330.7 MB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.0001725/0.2818, allocations: 71.5 kB / 414.6 MB, free: 63.97 MB / 330.7 MB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 4.003e-05/0.2818, allocations: 46.56 kB / 414.7 MB, free: 63.97 MB / 330.7 MB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.004782/0.2866, allocations: 2.515 MB / 417.2 MB, free: 63.4 MB / 330.7 MB
Warning: The model contains alias variables with redundant start and/or conflicting nominal values. It is recommended to resolve the conflicts, because otherwise the system could be hard to solve. To print the conflicting alias sets and the chosen candidates please use -d=aliasConflicts.
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.0106/0.2972, allocations: 6.119 MB / 423.3 MB, free: 60.17 MB / 330.7 MB
Notification: Performance of preOpt comSubExp (simulation): time 0.00401/0.3012, allocations: 2.48 MB / 425.8 MB, free: 58.8 MB / 330.7 MB
Notification: Performance of preOpt resolveLoops (simulation): time 0.001001/0.3022, allocations: 0.7978 MB / 426.6 MB, free: 58 MB / 330.7 MB
Notification: Performance of preOpt evalFunc (simulation): time 0.008772/0.311, allocations: 4.623 MB / 431.2 MB, free: 53.5 MB / 330.7 MB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 4.108e-05/0.311, allocations: 46.7 kB / 431.2 MB, free: 53.45 MB / 330.7 MB
Notification: Performance of pre-optimization done (n=144): time 4.759e-06/0.311, allocations: 0 / 431.2 MB, free: 53.45 MB / 330.7 MB
Notification: Performance of matching and sorting (n=180): time 0.02764/0.3387, allocations: 6.871 MB / 438.1 MB, free: 46.66 MB / 330.7 MB
Notification: Performance of inlineWhenForInitialization (initialization): time 4.002e-05/0.3387, allocations: 99.11 kB / 438.2 MB, free: 46.54 MB / 330.7 MB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0008134/0.3395, allocations: 0.952 MB / 439.2 MB, free: 45.59 MB / 330.7 MB
Notification: Performance of collectPreVariables (initialization): time 0.0001316/0.3396, allocations: 57.7 kB / 439.2 MB, free: 45.53 MB / 330.7 MB
Notification: Performance of collectInitialEqns (initialization): time 0.0003211/0.34, allocations: 0.8517 MB / 440.1 MB, free: 44.77 MB / 330.7 MB
Notification: Performance of collectInitialBindings (initialization): time 0.0003676/0.3403, allocations: 0.6686 MB / 440.7 MB, free: 44.12 MB / 330.7 MB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.0004661/0.3408, allocations: 417.1 kB / 441.1 MB, free: 43.7 MB / 330.7 MB
Notification: Performance of setup shared object (initialization): time 0.0001124/0.3409, allocations: 0.5589 MB / 441.7 MB, free: 43.14 MB / 330.7 MB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.0009023/0.3418, allocations: 0.6126 MB / 442.3 MB, free: 42.53 MB / 330.7 MB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.001155/0.343, allocations: 1.366 MB / 443.7 MB, free: 40.86 MB / 330.7 MB
Notification: Performance of analyzeInitialSystem (initialization): time 0.00223/0.3452, allocations: 2.187 MB / 445.9 MB, free: 38.39 MB / 330.7 MB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 8.887e-06/0.3452, allocations: 8 kB / 445.9 MB, free: 38.38 MB / 330.7 MB
Notification: Performance of matching and sorting (n=258) (initialization): time 0.006801/0.352, allocations: 2.561 MB / 448.4 MB, free: 35.8 MB / 330.7 MB
Notification: Performance of prepare postOptimizeDAE: time 2.79e-05/0.352, allocations: 15.12 kB / 448.5 MB, free: 35.79 MB / 330.7 MB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 1.738e-05/0.352, allocations: 16 kB / 448.5 MB, free: 35.77 MB / 330.7 MB
Notification: Performance of postOpt tearingSystem (initialization): time 0.006089/0.3581, allocations: 0.7524 MB / 449.2 MB, free: 35 MB / 330.7 MB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.002307/0.3604, allocations: 0.5149 MB / 449.7 MB, free: 34.49 MB / 330.7 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 0.009157/0.3696, allocations: 9.585 MB / 459.3 MB, free: 24.43 MB / 330.7 MB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.001489/0.3711, allocations: 66.92 kB / 459.4 MB, free: 24.37 MB / 330.7 MB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.0001525/0.3712, allocations: 95.98 kB / 459.5 MB, free: 24.28 MB / 330.7 MB
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 70
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (246):
 * Single equations (assignments): 242
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 4
 * Mixed (continuous/discrete) equation systems: 0
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 2 systems
   {(1,3,100.0%), (1,3,100.0%)}
 * Non-linear torn systems (#iteration vars, #inner vars): 2 systems
   {(1,3), (1,3)}
Notification: Performance of prepare postOptimizeDAE: time 0.0006382/0.3719, allocations: 411.9 kB / 459.9 MB, free: 23.86 MB / 330.7 MB
Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0003538/0.3722, allocations: 195.1 kB / 460.1 MB, free: 23.67 MB / 330.7 MB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.007046/0.3793, allocations: 2.447 MB / 462.5 MB, free: 21.2 MB / 330.7 MB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 1.102e-05/0.3793, allocations: 16 kB / 462.5 MB, free: 21.18 MB / 330.7 MB
Notification: Performance of postOpt constantLinearSystem (simulation): time 6.462e-06/0.3793, allocations: 4 kB / 462.5 MB, free: 21.18 MB / 330.7 MB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 1.753e-05/0.3793, allocations: 11.91 kB / 462.5 MB, free: 21.17 MB / 330.7 MB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.008569/0.3879, allocations: 3.961 MB / 466.5 MB, free: 17.2 MB / 330.7 MB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 6.933e-06/0.3879, allocations: 0 / 466.5 MB, free: 17.2 MB / 330.7 MB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.001928/0.3898, allocations: 389.8 kB / 466.9 MB, free: 16.82 MB / 330.7 MB
Notification: Performance of postOpt tearingSystem (simulation): time 0.005989/0.3958, allocations: 0.7206 MB / 467.6 MB, free: 16.09 MB / 330.7 MB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 0.0002118/0.396, allocations: 59.97 kB / 467.7 MB, free: 16.03 MB / 330.7 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 0.008352/0.4044, allocations: 9.402 MB / 477.1 MB, free: 6.156 MB / 330.7 MB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 1.593e-06/0.4044, allocations: 0 / 477.1 MB, free: 6.156 MB / 330.7 MB
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.007545/0.4119, allocations: 3.284 MB / 480.4 MB, free: 2.844 MB / 330.7 MB
Notification: Performance of postOpt removeConstants (simulation): time 0.0002943/0.4122, allocations: 115.1 kB / 480.5 MB, free: 2.73 MB / 330.7 MB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0001789/0.4124, allocations: 36 kB / 480.5 MB, free: 2.695 MB / 330.7 MB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0008328/0.4132, allocations: 32 kB / 480.5 MB, free: 2.664 MB / 330.7 MB
Notification: Performance of postOpt findZeroCrossings (simulation): time 0.000311/0.4135, allocations: 161.6 kB / 480.7 MB, free: 2.504 MB / 330.7 MB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 0.0001134/0.4136, allocations: 63.97 kB / 480.8 MB, free: 2.441 MB / 330.7 MB
Notification: Performance of sorting global known variables: time 0.000488/0.4141, allocations: 0.5341 MB / 481.3 MB, free: 1.902 MB / 330.7 MB
Notification: Performance of sort global known variables: time 7e-08/0.4141, allocations: 0 / 481.3 MB, free: 1.902 MB / 330.7 MB
Notification: Performance of remove unused functions: time 0.002614/0.4167, allocations: 1.075 MB / 482.4 MB, free: 0.8242 MB / 330.7 MB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 2
 * Number of states: 8 (solution.temperature,H3O.logn,OH.logn,H2O.logn,solution1.temperature,H_.logn,OH_.logn,H2O_.logn)
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (178):
 * Single equations (assignments): 174
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 4
 * Mixed (continuous/discrete) equation systems: 0
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 2 systems
   {(1,3,100.0%), (1,3,100.0%)}
 * Non-linear torn systems (#iteration vars, #inner vars): 2 systems
   {(1,3), (1,3)}
Notification: Performance of Backend phase and start with SimCode phase: time 0.001765/0.4185, allocations: 1.208 MB / 483.6 MB, free: 15.74 MB / 346.7 MB
Notification: Performance of simCode: created initialization part: time 0.004389/0.4229, allocations: 2.484 MB / 486.1 MB, free: 13.19 MB / 346.7 MB
Notification: Performance of simCode: created event and clocks part: time 2.695e-06/0.4229, allocations: 0 / 486.1 MB, free: 13.19 MB / 346.7 MB
Notification: Performance of simCode: created simulation system equations: time 0.002485/0.4254, allocations: 1.619 MB / 487.7 MB, free: 11.51 MB / 346.7 MB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.001592/0.427, allocations: 356.8 kB / 488 MB, free: 11.18 MB / 346.7 MB
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.005853/0.4328, allocations: 3.14 MB / 491.2 MB, free: 7.98 MB / 346.7 MB
Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0008115/0.4336, allocations: 0.689 MB / 491.9 MB, free: 7.254 MB / 346.7 MB
Notification: Performance of simCode: alias equations: time 0.00126/0.4349, allocations: 340.8 kB / 492.2 MB, free: 6.926 MB / 346.7 MB
Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0006058/0.4355, allocations: 244.3 kB / 492.4 MB, free: 6.684 MB / 346.7 MB
Notification: Performance of SimCode: time 9.92e-07/0.4355, allocations: 0 / 492.4 MB, free: 6.684 MB / 346.7 MB
Notification: Performance of Templates: time 0.06683/0.5023, allocations: 38.86 MB / 0.5188 GB, free: 124 kB / 378.7 MB
"
[Timeout remaining time 659]
make -j1 -f Chemical_master_Chemical.Obsolete.Examples.AcidBase.WaterSelfIonization.makefile [Timeout 660]
(rm -f Chemical_master_Chemical.Obsolete.Examples.AcidBase.WaterSelfIonization.pipe ; mkfifo Chemical_master_Chemical.Obsolete.Examples.AcidBase.WaterSelfIonization.pipe ; head -c 1048576 < Chemical_master_Chemical.Obsolete.Examples.AcidBase.WaterSelfIonization.pipe >> ../files/Chemical_master_Chemical.Obsolete.Examples.AcidBase.WaterSelfIonization.sim & ./Chemical_master_Chemical.Obsolete.Examples.AcidBase.WaterSelfIonization -abortSlowSimulation -alarm=240  -lv LOG_STATS > Chemical_master_Chemical.Obsolete.Examples.AcidBase.WaterSelfIonization.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 6.723763640969992]