Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_master_Chemical.Examples.debug.EnzymeKinetics3.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001895/0.001895, allocations: 85.48 kB / 19.44 MB, free: 344 kB / 13.93 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.002007/0.002007, allocations: 177.2 kB / 22.76 MB, free: 1.66 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.587/1.587, allocations: 177.1 MB / 203.1 MB, free: 5.609 MB / 186.7 MB
"
[Timeout remaining time 178]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo): time 0.1529/0.1529, allocations: 17.45 MB / 277 MB, free: 11.59 MB / 266.7 MB
"
[Timeout remaining time 180]
Using package Chemical with version 2.0.1 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Chemical.Examples.debug.EnzymeKinetics3,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Examples.debug.EnzymeKinetics3")
translateModel(Chemical.Examples.debug.EnzymeKinetics3,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Examples.debug.EnzymeKinetics3") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.372e-06/1.372e-06, allocations: 0 / 352.8 MB, free: 10.19 MB / 282.7 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 2.616e-05/2.753e-05, allocations: 2.312 kB / 352.8 MB, free: 10.19 MB / 282.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1586:5-1586:64:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1586:5-1586:64:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"system\" component but
an inner \"system\" component is not defined.
For simulation drag Modelica.Fluid.System into your model
to specify system properties.
Notification: Performance of NFInst.instantiate(Chemical.Examples.debug.EnzymeKinetics3): time 0.05421/0.05424, allocations: 37.21 MB / 390 MB, free: 5.078 MB / 314.7 MB
Notification: Performance of NFInst.instExpressions: time 0.02603/0.08027, allocations: 11.72 MB / 401.7 MB, free: 9.312 MB / 330.7 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.003339/0.08361, allocations: 111.1 kB / 401.9 MB, free: 9.203 MB / 330.7 MB
Notification: Performance of NFTyping.typeComponents: time 0.006357/0.08997, allocations: 2.14 MB / 404 MB, free: 7.051 MB / 330.7 MB
Notification: Performance of NFTyping.typeBindings: time 0.006831/0.0968, allocations: 1.959 MB / 406 MB, free: 5.078 MB / 330.7 MB
Notification: Performance of NFTyping.typeClassSections: time 0.01044/0.1072, allocations: 4.528 MB / 410.5 MB, free: 0.5312 MB / 330.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1332:3-1332:55:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.MM has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1333:3-1333:87:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.Hf has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1334:3-1334:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.H0 has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.blow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.bhigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1341:3-1342:83:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.z has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1344:3-1344:89:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.phase has no value, and is fixed during initialization (fixed=true), using available start value (start=Chemical.Interfaces.Phase.Gas) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1347:3-1347:140:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.VmBase has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1348:3-1348:137:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.VmExcess has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
Notification: Performance of NFFlatten.flatten: time 0.1808/0.2881, allocations: 4.78 MB / 415.3 MB, free: 33.77 MB / 330.7 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.002253/0.2903, allocations: 0.8173 MB / 416.1 MB, free: 33.54 MB / 330.7 MB
Notification: Performance of NFEvalConstants.evaluate: time 0.007658/0.298, allocations: 2.643 MB / 418.7 MB, free: 33.32 MB / 330.7 MB
Notification: Performance of NFSimplifyModel.simplify: time 0.006598/0.3046, allocations: 2.104 MB / 420.8 MB, free: 33.15 MB / 330.7 MB
Notification: Performance of NFPackage.collectConstants: time 0.001466/0.3061, allocations: 406.1 kB / 421.2 MB, free: 33.15 MB / 330.7 MB
Notification: Performance of NFFlatten.collectFunctions: time 0.006749/0.3128, allocations: 2.14 MB / 423.4 MB, free: 33.09 MB / 330.7 MB
Notification: Performance of NFScalarize.scalarize: time 0.001349/0.3142, allocations: 1.378 MB / 424.7 MB, free: 32.86 MB / 330.7 MB
Notification: Performance of NFVerifyModel.verify: time 0.002827/0.317, allocations: 1.502 MB / 426.2 MB, free: 32.5 MB / 330.7 MB
Notification: Performance of NFConvertDAE.convert: time 0.01124/0.3282, allocations: 7.499 MB / 433.7 MB, free: 29.57 MB / 330.7 MB
Notification: Performance of FrontEnd - DAE generated: time 6.702e-06/0.3282, allocations: 0 / 433.7 MB, free: 29.57 MB / 330.7 MB
Notification: Performance of FrontEnd: time 2.314e-06/0.3282, allocations: 0 / 433.7 MB, free: 29.57 MB / 330.7 MB
Notification: Performance of Transformations before backend: time 0.0002738/0.3285, allocations: 0 / 433.7 MB, free: 29.57 MB / 330.7 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 1270
 * Number of variables: 1270
Notification: Performance of Generate backend data structure: time 0.01305/0.3416, allocations: 6.168 MB / 439.9 MB, free: 25.43 MB / 330.7 MB
Notification: Performance of prepare preOptimizeDAE: time 5.11e-05/0.3416, allocations: 12.22 kB / 439.9 MB, free: 25.43 MB / 330.7 MB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.004016/0.3456, allocations: 2.171 MB / 442.1 MB, free: 23.79 MB / 330.7 MB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.003873/0.3495, allocations: 2.538 MB / 444.6 MB, free: 21.33 MB / 330.7 MB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.0003558/0.3498, allocations: 0.6382 MB / 445.3 MB, free: 20.63 MB / 330.7 MB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.0004516/0.3503, allocations: 406.4 kB / 445.7 MB, free: 20.25 MB / 330.7 MB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.008656/0.359, allocations: 6.531 MB / 452.2 MB, free: 13.71 MB / 330.7 MB
Notification: Performance of preOpt findStateOrder (simulation): time 7.905e-05/0.359, allocations: 192 / 452.2 MB, free: 13.71 MB / 330.7 MB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.0002867/0.3593, allocations: 166.1 kB / 452.4 MB, free: 13.56 MB / 330.7 MB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 0.0004935/0.3598, allocations: 0.5977 MB / 453 MB, free: 12.96 MB / 330.7 MB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.01181/0.3716, allocations: 12.07 MB / 465 MB, free: 0.8828 MB / 330.7 MB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.05336/0.425, allocations: 26.39 MB / 491.4 MB, free: 6.316 MB / 362.7 MB
Notification: Performance of preOpt comSubExp (simulation): time 0.005057/0.43, allocations: 2.316 MB / 493.7 MB, free: 4.023 MB / 362.7 MB
Notification: Performance of preOpt resolveLoops (simulation): time 0.003519/0.4336, allocations: 1.815 MB / 495.5 MB, free: 2.199 MB / 362.7 MB
Notification: Performance of preOpt evalFunc (simulation): time 0.03009/0.4636, allocations: 13.72 MB / 0.4973 GB, free: 4.555 MB / 378.7 MB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 6.343e-05/0.4637, allocations: 55.33 kB / 0.4974 GB, free: 4.492 MB / 378.7 MB
Notification: Performance of pre-optimization done (n=227): time 4.278e-06/0.4637, allocations: 0 / 0.4974 GB, free: 4.492 MB / 378.7 MB
Notification: Performance of matching and sorting (n=324): time 0.1008/0.5645, allocations: 24.09 MB / 0.5209 GB, free: 12.46 MB / 410.7 MB
Notification: Performance of inlineWhenForInitialization (initialization): time 0.0001003/0.5646, allocations: 77.41 kB / 0.521 GB, free: 12.38 MB / 410.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1348:3-1348:137:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.VmExcess has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1347:3-1347:140:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.VmBase has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1344:3-1344:89:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.phase has no value, and is fixed during initialization (fixed=true), using available start value (start=Chemical.Interfaces.Phase.Gas) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1341:3-1342:83:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.z has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.bhigh[3] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.bhigh[2] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.bhigh[1] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[7] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[6] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[5] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[4] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[3] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[2] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[1] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.blow[3] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.blow[2] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.blow[1] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[7] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[6] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[5] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[4] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[3] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[2] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[1] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1334:3-1334:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.H0 has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1333:3-1333:87:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.Hf has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1332:3-1332:55:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.MM has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.007085/0.5717, allocations: 2.88 MB / 0.5238 GB, free: 9.48 MB / 410.7 MB
Notification: Performance of collectPreVariables (initialization): time 0.001548/0.5733, allocations: 65.7 kB / 0.5239 GB, free: 9.41 MB / 410.7 MB
Notification: Performance of collectInitialEqns (initialization): time 0.003827/0.5771, allocations: 2.578 MB / 0.5264 GB, free: 6.824 MB / 410.7 MB
Notification: Performance of collectInitialBindings (initialization): time 0.003273/0.5804, allocations: 1.227 MB / 0.5276 GB, free: 5.613 MB / 410.7 MB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.00361/0.584, allocations: 1.126 MB / 0.5287 GB, free: 4.477 MB / 410.7 MB
Notification: Performance of setup shared object (initialization): time 0.0003157/0.5843, allocations: 480.7 kB / 0.5291 GB, free: 4.004 MB / 410.7 MB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.008353/0.5926, allocations: 2.79 MB / 0.5319 GB, free: 1.215 MB / 410.7 MB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.01186/0.6045, allocations: 4.582 MB / 0.5363 GB, free: 11.95 MB / 426.7 MB
Notification: It was not possible to check the given initialization system for consistency symbolically, because the relevant equations are part of an algebraic loop. This is not supported yet.
Notification: Performance of analyzeInitialSystem (initialization): time 0.5965/1.201, allocations: 67.88 MB / 0.6026 GB, free: 133.1 MB / 442.7 MB
Warning: It was not possible to solve the under-determined initial system (301 equations and 329 variables)
Error: No system for the symbolic initialization was generated
"
[Timeout remaining time 659]
[Calling sys.exit(0), Time elapsed: 3.648722467944026]