Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_master_Chemical.Examples.debug.EnzymeKinetics2.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001944/0.001944, allocations: 85.48 kB / 19.44 MB, free: 344 kB / 13.93 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.002023/0.002023, allocations: 173.2 kB / 22.76 MB, free: 1.664 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.658/1.658, allocations: 177.1 MB / 203.1 MB, free: 5.605 MB / 186.7 MB
"
[Timeout remaining time 178]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo): time 0.1593/0.1593, allocations: 17.46 MB / 277 MB, free: 11.59 MB / 266.7 MB
"
[Timeout remaining time 180]
Using package Chemical with version 2.0.1 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Chemical.Examples.debug.EnzymeKinetics2,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Examples.debug.EnzymeKinetics2")
translateModel(Chemical.Examples.debug.EnzymeKinetics2,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Examples.debug.EnzymeKinetics2") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.512e-06/1.512e-06, allocations: 0 / 352.8 MB, free: 10.2 MB / 282.7 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 3.093e-05/3.244e-05, allocations: 8.781 kB / 352.8 MB, free: 10.19 MB / 282.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1586:5-1586:64:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1586:5-1586:64:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"system\" component but
an inner \"system\" component is not defined.
For simulation drag Modelica.Fluid.System into your model
to specify system properties.
Notification: Performance of NFInst.instantiate(Chemical.Examples.debug.EnzymeKinetics2): time 0.05696/0.05699, allocations: 37.2 MB / 390 MB, free: 5.082 MB / 314.7 MB
Notification: Performance of NFInst.instExpressions: time 0.0236/0.08059, allocations: 11.73 MB / 401.8 MB, free: 9.309 MB / 330.7 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.003556/0.08414, allocations: 107.1 kB / 401.9 MB, free: 9.203 MB / 330.7 MB
Notification: Performance of NFTyping.typeComponents: time 0.006706/0.09085, allocations: 2.144 MB / 404 MB, free: 7.047 MB / 330.7 MB
Notification: Performance of NFTyping.typeBindings: time 0.00703/0.09788, allocations: 1.959 MB / 406 MB, free: 5.074 MB / 330.7 MB
Notification: Performance of NFTyping.typeClassSections: time 0.01045/0.1083, allocations: 4.528 MB / 410.5 MB, free: 0.5273 MB / 330.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1332:3-1332:55:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.MM has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1333:3-1333:87:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.Hf has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1334:3-1334:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.H0 has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.blow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.bhigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1341:3-1342:83:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.z has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1344:3-1344:89:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.phase has no value, and is fixed during initialization (fixed=true), using available start value (start=Chemical.Interfaces.Phase.Gas) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1347:3-1347:140:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.VmBase has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1348:3-1348:137:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.VmExcess has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
Notification: Performance of NFFlatten.flatten: time 0.1902/0.2985, allocations: 4.773 MB / 415.3 MB, free: 33.81 MB / 330.7 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.002368/0.3009, allocations: 0.8204 MB / 416.1 MB, free: 33.58 MB / 330.7 MB
Notification: Performance of NFEvalConstants.evaluate: time 0.006853/0.3078, allocations: 2.638 MB / 418.7 MB, free: 33.36 MB / 330.7 MB
Notification: Performance of NFSimplifyModel.simplify: time 0.004431/0.3122, allocations: 2.106 MB / 420.8 MB, free: 33.19 MB / 330.7 MB
Notification: Performance of NFPackage.collectConstants: time 0.000876/0.3131, allocations: 405.3 kB / 421.2 MB, free: 33.19 MB / 330.7 MB
Notification: Performance of NFFlatten.collectFunctions: time 0.005747/0.3188, allocations: 2.141 MB / 423.4 MB, free: 33.12 MB / 330.7 MB
Notification: Performance of NFScalarize.scalarize: time 0.001054/0.3199, allocations: 1.383 MB / 424.8 MB, free: 32.9 MB / 330.7 MB
Notification: Performance of NFVerifyModel.verify: time 0.002299/0.3222, allocations: 1.503 MB / 426.3 MB, free: 32.52 MB / 330.7 MB
Notification: Performance of NFConvertDAE.convert: time 0.01174/0.3339, allocations: 7.487 MB / 433.7 MB, free: 29.55 MB / 330.7 MB
Notification: Performance of FrontEnd - DAE generated: time 6.863e-06/0.3339, allocations: 2.031 kB / 433.7 MB, free: 29.55 MB / 330.7 MB
Notification: Performance of FrontEnd: time 2.415e-06/0.3339, allocations: 0 / 433.7 MB, free: 29.55 MB / 330.7 MB
Notification: Performance of Transformations before backend: time 0.0002064/0.3341, allocations: 2.438 kB / 433.7 MB, free: 29.55 MB / 330.7 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 1270
 * Number of variables: 1270
Notification: Performance of Generate backend data structure: time 0.01231/0.3464, allocations: 6.166 MB / 439.9 MB, free: 25.42 MB / 330.7 MB
Notification: Performance of prepare preOptimizeDAE: time 4.829e-05/0.3465, allocations: 11.34 kB / 439.9 MB, free: 25.42 MB / 330.7 MB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.004029/0.3505, allocations: 2.168 MB / 442.1 MB, free: 23.77 MB / 330.7 MB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.004047/0.3546, allocations: 2.548 MB / 444.6 MB, free: 21.3 MB / 330.7 MB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.0003499/0.3549, allocations: 0.6318 MB / 445.3 MB, free: 20.61 MB / 330.7 MB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.0004552/0.3554, allocations: 406.2 kB / 445.7 MB, free: 20.23 MB / 330.7 MB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.009292/0.3646, allocations: 6.545 MB / 452.2 MB, free: 13.68 MB / 330.7 MB
Notification: Performance of preOpt findStateOrder (simulation): time 8.052e-05/0.3647, allocations: 192 / 452.2 MB, free: 13.68 MB / 330.7 MB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.0002765/0.365, allocations: 157.5 kB / 452.4 MB, free: 13.53 MB / 330.7 MB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 0.0004797/0.3655, allocations: 0.5939 MB / 453 MB, free: 12.94 MB / 330.7 MB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.01312/0.3786, allocations: 12.07 MB / 465 MB, free: 0.8594 MB / 330.7 MB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.05967/0.4383, allocations: 26.45 MB / 491.5 MB, free: 6.234 MB / 362.7 MB
Notification: Performance of preOpt comSubExp (simulation): time 0.005923/0.4442, allocations: 2.326 MB / 493.8 MB, free: 3.93 MB / 362.7 MB
Notification: Performance of preOpt resolveLoops (simulation): time 0.004129/0.4483, allocations: 1.813 MB / 495.6 MB, free: 2.105 MB / 362.7 MB
Notification: Performance of preOpt evalFunc (simulation): time 0.03538/0.4837, allocations: 13.72 MB / 0.4974 GB, free: 4.469 MB / 378.7 MB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 7.18e-05/0.4838, allocations: 61.98 kB / 0.4975 GB, free: 4.402 MB / 378.7 MB
Notification: Performance of pre-optimization done (n=227): time 4.759e-06/0.4838, allocations: 0 / 0.4975 GB, free: 4.402 MB / 378.7 MB
Notification: Performance of matching and sorting (n=324): time 0.094/0.5778, allocations: 24.09 MB / 0.521 GB, free: 12.38 MB / 410.7 MB
Notification: Performance of inlineWhenForInitialization (initialization): time 8.702e-05/0.5779, allocations: 77.41 kB / 0.5211 GB, free: 12.29 MB / 410.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1348:3-1348:137:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.VmExcess has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1347:3-1347:140:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.VmBase has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1344:3-1344:89:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.phase has no value, and is fixed during initialization (fixed=true), using available start value (start=Chemical.Interfaces.Phase.Gas) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1341:3-1342:83:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.z has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.bhigh[3] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.bhigh[2] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.bhigh[1] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[7] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[6] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[5] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[4] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[3] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[2] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[1] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.blow[3] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.blow[2] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.blow[1] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[7] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[6] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[5] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[4] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[3] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[2] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[1] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1334:3-1334:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.H0 has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1333:3-1333:87:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.Hf has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1332:3-1332:55:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.MM has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.005873/0.5837, allocations: 2.874 MB / 0.5239 GB, free: 9.395 MB / 410.7 MB
Notification: Performance of collectPreVariables (initialization): time 0.00123/0.585, allocations: 69.7 kB / 0.5239 GB, free: 9.32 MB / 410.7 MB
Notification: Performance of collectInitialEqns (initialization): time 0.002837/0.5878, allocations: 2.577 MB / 0.5265 GB, free: 6.734 MB / 410.7 MB
Notification: Performance of collectInitialBindings (initialization): time 0.002576/0.5904, allocations: 1.222 MB / 0.5276 GB, free: 5.527 MB / 410.7 MB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.00407/0.5945, allocations: 1.143 MB / 0.5288 GB, free: 4.379 MB / 410.7 MB
Notification: Performance of setup shared object (initialization): time 0.0002508/0.5947, allocations: 476.8 kB / 0.5292 GB, free: 3.91 MB / 410.7 MB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.006497/0.6012, allocations: 2.787 MB / 0.5319 GB, free: 1.121 MB / 410.7 MB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.008435/0.6096, allocations: 4.576 MB / 0.5364 GB, free: 11.86 MB / 426.7 MB
Notification: It was not possible to check the given initialization system for consistency symbolically, because the relevant equations are part of an algebraic loop. This is not supported yet.
Notification: Performance of analyzeInitialSystem (initialization): time 0.5872/1.197, allocations: 67.89 MB / 0.6027 GB, free: 133 MB / 442.7 MB
Warning: It was not possible to solve the under-determined initial system (301 equations and 329 variables)
Error: No system for the symbolic initialization was generated
"
[Timeout remaining time 659]
[Calling sys.exit(0), Time elapsed: 3.737424963968806]