Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_master_Chemical.Examples.SimpleReactionsWithJunction2.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.00194/0.00194, allocations: 89.48 kB / 19.44 MB, free: 336 kB / 13.93 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.002078/0.002078, allocations: 169.2 kB / 22.76 MB, free: 1.664 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.594/1.594, allocations: 177.1 MB / 203.1 MB, free: 5.621 MB / 186.7 MB
"
[Timeout remaining time 178]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo): time 0.1625/0.1625, allocations: 17.45 MB / 277 MB, free: 11.61 MB / 266.7 MB
"
[Timeout remaining time 180]
Using package Chemical with version 2.0.1 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Chemical.Examples.SimpleReactionsWithJunction2,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Examples.SimpleReactionsWithJunction2")
translateModel(Chemical.Examples.SimpleReactionsWithJunction2,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Examples.SimpleReactionsWithJunction2") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 2.274e-06/2.274e-06, allocations: 0 / 352.8 MB, free: 10.22 MB / 282.7 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 4.165e-05/4.392e-05, allocations: 4.984 kB / 352.8 MB, free: 10.22 MB / 282.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Processes.mo:1084:7-1084:40:writable] Warning: An inner declaration for outer component dropOfCommons could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Processes.mo:1084:7-1084:40:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"dropOfCommons\" component but
an inner \"dropOfCommons\" component is not defined.
Use Chemical.DropOfCommons in your model
to specify system properties.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1731:7-1731:66:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1731:7-1731:66:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"system\" component but
an inner \"system\" component is not defined.
For simulation drag Modelica.Fluid.System into your model
to specify system properties.
Notification: Performance of NFInst.instantiate(Chemical.Examples.SimpleReactionsWithJunction2): time 0.07143/0.07147, allocations: 37.58 MB / 390.4 MB, free: 4.742 MB / 314.7 MB
Notification: Performance of NFInst.instExpressions: time 0.02527/0.09674, allocations: 11.98 MB / 402.4 MB, free: 8.711 MB / 330.7 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.003786/0.1005, allocations: 99.25 kB / 402.5 MB, free: 8.613 MB / 330.7 MB
Notification: Performance of NFTyping.typeComponents: time 0.007149/0.1077, allocations: 2.253 MB / 404.7 MB, free: 6.348 MB / 330.7 MB
Notification: Performance of NFTyping.typeBindings: time 0.007059/0.1147, allocations: 2.013 MB / 406.7 MB, free: 4.32 MB / 330.7 MB
Notification: Performance of NFTyping.typeClassSections: time 0.1847/0.2994, allocations: 4.581 MB / 411.3 MB, free: 34.19 MB / 330.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1332:3-1332:55:writable] Warning: Parameter r.nextProducts[1].data.MM has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1333:3-1333:87:writable] Warning: Parameter r.nextProducts[1].data.Hf has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1334:3-1334:81:writable] Warning: Parameter r.nextProducts[1].data.H0 has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter r.nextProducts[1].data.alow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter r.nextProducts[1].data.blow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter r.nextProducts[1].data.ahigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter r.nextProducts[1].data.bhigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1341:3-1342:83:writable] Warning: Parameter r.nextProducts[1].data.z has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1344:3-1344:89:writable] Warning: Parameter r.nextProducts[1].data.phase has no value, and is fixed during initialization (fixed=true), using available start value (start=Chemical.Interfaces.Phase.Gas) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1347:3-1347:140:writable] Warning: Parameter r.nextProducts[1].data.VmBase has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1348:3-1348:137:writable] Warning: Parameter r.nextProducts[1].data.VmExcess has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1332:3-1332:55:writable] Warning: Parameter r1.nextProducts[1].data.MM has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1333:3-1333:87:writable] Warning: Parameter r1.nextProducts[1].data.Hf has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1334:3-1334:81:writable] Warning: Parameter r1.nextProducts[1].data.H0 has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter r1.nextProducts[1].data.alow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter r1.nextProducts[1].data.blow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter r1.nextProducts[1].data.ahigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter r1.nextProducts[1].data.bhigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1341:3-1342:83:writable] Warning: Parameter r1.nextProducts[1].data.z has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1344:3-1344:89:writable] Warning: Parameter r1.nextProducts[1].data.phase has no value, and is fixed during initialization (fixed=true), using available start value (start=Chemical.Interfaces.Phase.Gas) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1347:3-1347:140:writable] Warning: Parameter r1.nextProducts[1].data.VmBase has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1348:3-1348:137:writable] Warning: Parameter r1.nextProducts[1].data.VmExcess has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
Notification: Performance of NFFlatten.flatten: time 0.009333/0.3087, allocations: 5.021 MB / 416.3 MB, free: 33.3 MB / 330.7 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.002559/0.3113, allocations: 1.323 MB / 417.6 MB, free: 32.97 MB / 330.7 MB
Notification: Performance of NFEvalConstants.evaluate: time 0.007981/0.3193, allocations: 3.145 MB / 420.8 MB, free: 32.76 MB / 330.7 MB
Notification: Performance of NFSimplifyModel.simplify: time 0.005899/0.3252, allocations: 2.417 MB / 423.2 MB, free: 32.58 MB / 330.7 MB
Notification: Performance of NFPackage.collectConstants: time 0.001585/0.3268, allocations: 0.5313 MB / 423.7 MB, free: 32.58 MB / 330.7 MB
Notification: Performance of NFFlatten.collectFunctions: time 0.007466/0.3342, allocations: 2.313 MB / 426.1 MB, free: 32.52 MB / 330.7 MB
Notification: Performance of NFScalarize.scalarize: time 0.00231/0.3365, allocations: 1.701 MB / 427.8 MB, free: 31.68 MB / 330.7 MB
Notification: Performance of NFVerifyModel.verify: time 0.004495/0.341, allocations: 1.79 MB / 429.5 MB, free: 30.91 MB / 330.7 MB
Notification: Performance of NFConvertDAE.convert: time 0.01417/0.3552, allocations: 9.015 MB / 438.6 MB, free: 26.52 MB / 330.7 MB
Notification: Performance of FrontEnd - DAE generated: time 5.63e-06/0.3552, allocations: 3.562 kB / 438.6 MB, free: 26.52 MB / 330.7 MB
Notification: Performance of FrontEnd: time 1.874e-06/0.3552, allocations: 0 / 438.6 MB, free: 26.52 MB / 330.7 MB
Notification: Performance of Transformations before backend: time 0.0003183/0.3555, allocations: 0 / 438.6 MB, free: 26.52 MB / 330.7 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 1431
 * Number of variables: 1431
Notification: Performance of Generate backend data structure: time 0.01481/0.3703, allocations: 6.988 MB / 445.6 MB, free: 20.19 MB / 330.7 MB
Notification: Performance of prepare preOptimizeDAE: time 3.961e-05/0.3704, allocations: 8.031 kB / 445.6 MB, free: 20.18 MB / 330.7 MB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.004925/0.3753, allocations: 2.284 MB / 447.8 MB, free: 17.93 MB / 330.7 MB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.00463/0.3799, allocations: 2.596 MB / 450.4 MB, free: 15.44 MB / 330.7 MB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.0003979/0.3803, allocations: 0.7307 MB / 451.2 MB, free: 14.63 MB / 330.7 MB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.0005981/0.3809, allocations: 461 kB / 451.6 MB, free: 14.19 MB / 330.7 MB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.01141/0.3923, allocations: 6.88 MB / 458.5 MB, free: 7.297 MB / 330.7 MB
Notification: Performance of preOpt findStateOrder (simulation): time 8.736e-05/0.3924, allocations: 4.172 kB / 458.5 MB, free: 7.293 MB / 330.7 MB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.0003536/0.3928, allocations: 182.3 kB / 458.7 MB, free: 7.121 MB / 330.7 MB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 0.0004466/0.3932, allocations: 0.5513 MB / 459.2 MB, free: 6.574 MB / 330.7 MB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.01538/0.4086, allocations: 10.3 MB / 469.5 MB, free: 12.27 MB / 346.7 MB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.06833/0.4769, allocations: 30.66 MB / 0.4885 GB, free: 13.47 MB / 378.7 MB
Notification: Performance of preOpt comSubExp (simulation): time 0.006726/0.4837, allocations: 2.851 MB / 0.4913 GB, free: 10.62 MB / 378.7 MB
Notification: Performance of preOpt resolveLoops (simulation): time 0.005375/0.489, allocations: 2.215 MB / 0.4934 GB, free: 8.406 MB / 378.7 MB
Notification: Performance of preOpt evalFunc (simulation): time 0.03588/0.5249, allocations: 16.41 MB / 0.5094 GB, free: 8.062 MB / 394.7 MB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 8.23e-05/0.525, allocations: 60.97 kB / 0.5095 GB, free: 8 MB / 394.7 MB
Notification: Performance of pre-optimization done (n=289): time 4.809e-06/0.525, allocations: 2.656 kB / 0.5095 GB, free: 8 MB / 394.7 MB
Error: Internal error IndexReduction.pantelidesIndexReduction failed! System is structurally singular and cannot be handled because the number of unassigned equations is larger than the number of states. Use -d=bltdump to get more information.
Error: Internal error Transformation Module PFPlusExt index Reduction Method Pantelides failed!
"
[Timeout remaining time 659]
[Calling sys.exit(0), Time elapsed: 3.032048466964625]