Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_master_Chemical.Examples.SimpleReactionsWithJunction.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.002742/0.002742, allocations: 81.5 kB / 19.44 MB, free: 344 kB / 13.93 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.003121/0.003121, allocations: 169.6 kB / 22.76 MB, free: 1.664 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.598/1.598, allocations: 177.1 MB / 203.1 MB, free: 5.637 MB / 186.7 MB
"
[Timeout remaining time 178]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo): time 0.145/0.145, allocations: 17.46 MB / 277 MB, free: 11.62 MB / 266.7 MB
"
[Timeout remaining time 180]
Using package Chemical with version 2.0.1 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Chemical.Examples.SimpleReactionsWithJunction,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Examples.SimpleReactionsWithJunction")
translateModel(Chemical.Examples.SimpleReactionsWithJunction,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Examples.SimpleReactionsWithJunction") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.893e-06/1.893e-06, allocations: 0 / 352.8 MB, free: 10.23 MB / 282.7 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 3.598e-05/3.787e-05, allocations: 8.984 kB / 352.8 MB, free: 10.23 MB / 282.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Processes.mo:1084:7-1084:40:writable] Warning: An inner declaration for outer component dropOfCommons could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Processes.mo:1084:7-1084:40:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"dropOfCommons\" component but
an inner \"dropOfCommons\" component is not defined.
Use Chemical.DropOfCommons in your model
to specify system properties.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1731:7-1731:66:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1731:7-1731:66:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"system\" component but
an inner \"system\" component is not defined.
For simulation drag Modelica.Fluid.System into your model
to specify system properties.
Notification: Performance of NFInst.instantiate(Chemical.Examples.SimpleReactionsWithJunction): time 0.0719/0.07194, allocations: 44.9 MB / 397.7 MB, free: 13.4 MB / 330.7 MB
Notification: Performance of NFInst.instExpressions: time 0.1994/0.2713, allocations: 13.85 MB / 411.6 MB, free: 31.98 MB / 330.7 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.00574/0.2771, allocations: 150.3 kB / 411.7 MB, free: 31.98 MB / 330.7 MB
Notification: Performance of NFTyping.typeComponents: time 0.008031/0.2851, allocations: 2.646 MB / 414.3 MB, free: 31.94 MB / 330.7 MB
Notification: Performance of NFTyping.typeBindings: time 0.01207/0.2972, allocations: 2.845 MB / 417.2 MB, free: 31.29 MB / 330.7 MB
Notification: Performance of NFTyping.typeClassSections: time 0.01098/0.3082, allocations: 5.106 MB / 422.3 MB, free: 30.95 MB / 330.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1332:3-1332:55:writable] Warning: Parameter r.nextProducts[1].data.MM has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1333:3-1333:87:writable] Warning: Parameter r.nextProducts[1].data.Hf has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1334:3-1334:81:writable] Warning: Parameter r.nextProducts[1].data.H0 has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter r.nextProducts[1].data.alow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter r.nextProducts[1].data.blow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter r.nextProducts[1].data.ahigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter r.nextProducts[1].data.bhigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1341:3-1342:83:writable] Warning: Parameter r.nextProducts[1].data.z has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1344:3-1344:89:writable] Warning: Parameter r.nextProducts[1].data.phase has no value, and is fixed during initialization (fixed=true), using available start value (start=Chemical.Interfaces.Phase.Gas) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1347:3-1347:140:writable] Warning: Parameter r.nextProducts[1].data.VmBase has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1348:3-1348:137:writable] Warning: Parameter r.nextProducts[1].data.VmExcess has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1332:3-1332:55:writable] Warning: Parameter r1.nextProducts[1].data.MM has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1333:3-1333:87:writable] Warning: Parameter r1.nextProducts[1].data.Hf has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1334:3-1334:81:writable] Warning: Parameter r1.nextProducts[1].data.H0 has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter r1.nextProducts[1].data.alow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter r1.nextProducts[1].data.blow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter r1.nextProducts[1].data.ahigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter r1.nextProducts[1].data.bhigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1341:3-1342:83:writable] Warning: Parameter r1.nextProducts[1].data.z has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1344:3-1344:89:writable] Warning: Parameter r1.nextProducts[1].data.phase has no value, and is fixed during initialization (fixed=true), using available start value (start=Chemical.Interfaces.Phase.Gas) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1347:3-1347:140:writable] Warning: Parameter r1.nextProducts[1].data.VmBase has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1348:3-1348:137:writable] Warning: Parameter r1.nextProducts[1].data.VmExcess has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1332:3-1332:55:writable] Warning: Parameter r_ref.nextProducts[1].data.MM has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1333:3-1333:87:writable] Warning: Parameter r_ref.nextProducts[1].data.Hf has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1334:3-1334:81:writable] Warning: Parameter r_ref.nextProducts[1].data.H0 has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter r_ref.nextProducts[1].data.alow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter r_ref.nextProducts[1].data.blow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter r_ref.nextProducts[1].data.ahigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter r_ref.nextProducts[1].data.bhigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1341:3-1342:83:writable] Warning: Parameter r_ref.nextProducts[1].data.z has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1344:3-1344:89:writable] Warning: Parameter r_ref.nextProducts[1].data.phase has no value, and is fixed during initialization (fixed=true), using available start value (start=Chemical.Interfaces.Phase.Gas) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1347:3-1347:140:writable] Warning: Parameter r_ref.nextProducts[1].data.VmBase has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1348:3-1348:137:writable] Warning: Parameter r_ref.nextProducts[1].data.VmExcess has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
Notification: Performance of NFFlatten.flatten: time 0.01335/0.3215, allocations: 7.496 MB / 429.8 MB, free: 28.92 MB / 330.7 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.002682/0.3242, allocations: 1.677 MB / 431.5 MB, free: 28.21 MB / 330.7 MB
Notification: Performance of NFEvalConstants.evaluate: time 0.009532/0.3337, allocations: 4.554 MB / 436 MB, free: 25.66 MB / 330.7 MB
Notification: Performance of NFSimplifyModel.simplify: time 0.007956/0.3417, allocations: 3.533 MB / 439.6 MB, free: 23.89 MB / 330.7 MB
Notification: Performance of NFPackage.collectConstants: time 0.002219/0.3439, allocations: 0.7409 MB / 440.3 MB, free: 23.89 MB / 330.7 MB
Notification: Performance of NFFlatten.collectFunctions: time 0.01047/0.3544, allocations: 2.56 MB / 442.9 MB, free: 22.79 MB / 330.7 MB
Notification: Performance of NFScalarize.scalarize: time 0.002805/0.3572, allocations: 2.475 MB / 445.3 MB, free: 20.42 MB / 330.7 MB
Notification: Performance of NFVerifyModel.verify: time 0.006059/0.3632, allocations: 2.571 MB / 447.9 MB, free: 17.95 MB / 330.7 MB
Notification: Performance of NFConvertDAE.convert: time 0.01734/0.3806, allocations: 12.23 MB / 460.1 MB, free: 6.516 MB / 330.7 MB
Notification: Performance of FrontEnd - DAE generated: time 1.059e-05/0.3806, allocations: 2.656 kB / 460.1 MB, free: 6.516 MB / 330.7 MB
Notification: Performance of FrontEnd: time 3.125e-06/0.3806, allocations: 0 / 460.1 MB, free: 6.516 MB / 330.7 MB
Notification: Performance of Transformations before backend: time 0.0005278/0.3811, allocations: 2.625 kB / 460.1 MB, free: 6.516 MB / 330.7 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 2093
 * Number of variables: 2093
Notification: Performance of Generate backend data structure: time 0.02645/0.4076, allocations: 10.03 MB / 470.2 MB, free: 12.55 MB / 346.7 MB
Notification: Performance of prepare preOptimizeDAE: time 7.378e-05/0.4076, allocations: 8.031 kB / 470.2 MB, free: 12.54 MB / 346.7 MB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.01028/0.4179, allocations: 3.512 MB / 473.7 MB, free: 9.07 MB / 346.7 MB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.01/0.4279, allocations: 3.871 MB / 477.6 MB, free: 5.391 MB / 346.7 MB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.001204/0.4291, allocations: 1.1 MB / 478.7 MB, free: 4.168 MB / 346.7 MB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.001901/0.431, allocations: 0.6468 MB / 479.3 MB, free: 3.535 MB / 346.7 MB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.02526/0.4563, allocations: 10.25 MB / 489.6 MB, free: 9.25 MB / 362.7 MB
Notification: Performance of preOpt findStateOrder (simulation): time 0.0001133/0.4564, allocations: 192 / 489.6 MB, free: 9.25 MB / 362.7 MB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.0006786/0.4571, allocations: 260.3 kB / 489.8 MB, free: 9.008 MB / 362.7 MB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 0.001125/0.4582, allocations: 0.8456 MB / 490.7 MB, free: 8.164 MB / 362.7 MB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0304/0.4886, allocations: 16.43 MB / 0.4952 GB, free: 7.723 MB / 378.7 MB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.09855/0.5871, allocations: 45.17 MB / 0.5393 GB, free: 10.32 MB / 426.7 MB
Notification: Performance of preOpt comSubExp (simulation): time 0.01054/0.5977, allocations: 4.375 MB / 0.5436 GB, free: 5.926 MB / 426.7 MB
Notification: Performance of preOpt resolveLoops (simulation): time 0.007862/0.6055, allocations: 3.377 MB / 0.5469 GB, free: 2.543 MB / 426.7 MB
Notification: Performance of preOpt evalFunc (simulation): time 0.2052/0.8107, allocations: 24.28 MB / 0.5706 GB, free: 144.3 MB / 442.7 MB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 4.426e-05/0.8107, allocations: 66.19 kB / 0.5707 GB, free: 144.3 MB / 442.7 MB
Notification: Performance of pre-optimization done (n=440): time 5.73e-06/0.8107, allocations: 1.875 kB / 0.5707 GB, free: 144.3 MB / 442.7 MB
Error: Internal error IndexReduction.pantelidesIndexReduction failed! System is structurally singular and cannot be handled because the number of unassigned equations is larger than the number of states. Use -d=bltdump to get more information.
Error: Internal error Transformation Module PFPlusExt index Reduction Method Pantelides failed!
"
[Timeout remaining time 659]
[Calling sys.exit(0), Time elapsed: 3.3390817410545424]