Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllostery.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001812/0.001812, allocations: 85.48 kB / 19.44 MB, free: 340 kB / 13.93 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.002065/0.002065, allocations: 173.2 kB / 22.76 MB, free: 1.66 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.551/1.551, allocations: 177.1 MB / 203.1 MB, free: 5.609 MB / 186.7 MB " [Timeout remaining time 178] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo): time 0.1456/0.1456, allocations: 17.37 MB / 276.9 MB, free: 11.68 MB / 266.7 MB " [Timeout remaining time 180] Using package Chemical with version 2.0.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: translateModel(Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllostery,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllostery") translateModel(Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllostery,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllostery") [Timeout 660] "Notification: Performance of FrontEnd - loaded program: time 1.282e-06/1.282e-06, allocations: 0 / 352.7 MB, free: 10.32 MB / 282.7 MB Notification: Performance of FrontEnd - Absyn->SCode: time 2.701e-05/2.829e-05, allocations: 4.844 kB / 352.7 MB, free: 10.31 MB / 282.7 MB [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/Obsolete.mo:14337:7-14337:66:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/Obsolete.mo:14337:7-14337:66:writable] Notification: The diagnostics message for the missing inner is: Your model is using an outer \"system\" component but an inner \"system\" component is not defined. For simulation drag Modelica.Fluid.System into your model to specify system properties. Notification: Performance of NFInst.instantiate(Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllostery): time 0.06074/0.06077, allocations: 43.25 MB / 396 MB, free: 15.14 MB / 330.7 MB Notification: Performance of NFInst.instExpressions: time 0.2388/0.2996, allocations: 73.65 MB / 469.6 MB, free: 4.719 MB / 330.7 MB Notification: Performance of NFInst.updateImplicitVariability: time 0.004318/0.3039, allocations: 81.97 kB / 469.7 MB, free: 4.641 MB / 330.7 MB Notification: Performance of NFTyping.typeComponents: time 0.00453/0.3084, allocations: 1.505 MB / 471.2 MB, free: 3.129 MB / 330.7 MB Notification: Performance of NFTyping.typeBindings: time 0.01861/0.327, allocations: 6.216 MB / 477.4 MB, free: 12.95 MB / 346.7 MB Notification: Performance of NFTyping.typeClassSections: time 0.03223/0.3593, allocations: 10.67 MB / 488.1 MB, free: 2.312 MB / 346.7 MB Notification: Performance of NFFlatten.flatten: time 0.03423/0.3935, allocations: 27.43 MB / 0.5035 GB, free: 6.781 MB / 378.7 MB Notification: Performance of NFFlatten.resolveConnections: time 0.02604/0.4195, allocations: 17.1 MB / 0.5202 GB, free: 5.582 MB / 394.7 MB Notification: Performance of NFEvalConstants.evaluate: time 0.04564/0.4652, allocations: 23.17 MB / 0.5428 GB, free: 14.38 MB / 426.7 MB Notification: Performance of NFSimplifyModel.simplify: time 0.3642/0.8294, allocations: 16.55 MB / 0.5589 GB, free: 32 MB / 426.8 MB Notification: Performance of NFPackage.collectConstants: time 0.01515/0.8445, allocations: 3.129 MB / 0.562 GB, free: 32 MB / 426.8 MB Notification: Performance of NFFlatten.collectFunctions: time 0.03914/0.8837, allocations: 10.38 MB / 0.5721 GB, free: 32 MB / 426.8 MB Notification: Performance of NFScalarize.scalarize: time 0.01409/0.8978, allocations: 7.161 MB / 0.5791 GB, free: 32 MB / 426.8 MB Notification: Performance of NFVerifyModel.verify: time 0.02807/0.9258, allocations: 9.413 MB / 0.5883 GB, free: 32 MB / 426.8 MB Notification: Performance of NFConvertDAE.convert: time 0.07079/0.9966, allocations: 47.66 MB / 0.6349 GB, free: 16 MB / 426.8 MB Notification: Performance of FrontEnd - DAE generated: time 6.703e-06/0.9966, allocations: 1.625 kB / 0.6349 GB, free: 16 MB / 426.8 MB Notification: Performance of FrontEnd: time 1.803e-06/0.9966, allocations: 0 / 0.6349 GB, free: 16 MB / 426.8 MB Notification: Performance of Transformations before backend: time 0.001318/0.998, allocations: 0 / 0.6349 GB, free: 16 MB / 426.8 MB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 3808 * Number of variables: 3808 Notification: Performance of Generate backend data structure: time 0.0906/1.089, allocations: 25.32 MB / 0.6596 GB, free: 9.172 MB / 442.8 MB Notification: Performance of prepare preOptimizeDAE: time 4.923e-05/1.089, allocations: 10.77 kB / 0.6596 GB, free: 9.164 MB / 442.8 MB Notification: Performance of preOpt normalInlineFunction (simulation): time 0.04241/1.131, allocations: 6.557 MB / 0.666 GB, free: 2.586 MB / 442.8 MB Notification: Performance of preOpt evaluateParameters (simulation): time 0.04065/1.172, allocations: 11.31 MB / 0.6771 GB, free: 7.734 MB / 458.8 MB Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.003866/1.176, allocations: 3.06 MB / 0.68 GB, free: 4.23 MB / 458.8 MB Notification: Performance of preOpt expandDerOperator (simulation): time 0.01273/1.188, allocations: 1.52 MB / 0.6815 GB, free: 2.711 MB / 458.8 MB Notification: Performance of preOpt clockPartitioning (simulation): time 0.1009/1.289, allocations: 33.64 MB / 0.7144 GB, free: 0.7656 MB / 490.8 MB Notification: Performance of preOpt findStateOrder (simulation): time 0.0006222/1.29, allocations: 10.28 kB / 0.7144 GB, free: 0.7617 MB / 490.8 MB Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.008932/1.299, allocations: 0.5863 MB / 0.715 GB, free: 180 kB / 490.8 MB Notification: Performance of preOpt inlineArrayEqn (simulation): time 0.0004147/1.299, allocations: 364 kB / 0.7153 GB, free: 15.82 MB / 0.4949 GB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.2979/1.597, allocations: 42.67 MB / 0.757 GB, free: 177.1 MB / 0.5105 GB Warning: The model contains alias variables with redundant start and/or conflicting nominal values. It is recommended to resolve the conflicts, because otherwise the system could be hard to solve. To print the conflicting alias sets and the chosen candidates please use -d=aliasConflicts. Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.3055/1.903, allocations: 183.7 MB / 0.9364 GB, free: 24.06 MB / 0.5105 GB Notification: Performance of preOpt comSubExp (simulation): time 0.8157/2.718, allocations: 215.4 MB / 1.147 GB, free: 39.79 MB / 0.5105 GB Notification: Performance of preOpt resolveLoops (simulation): time 0.2138/2.932, allocations: 16.31 MB / 1.163 GB, free: 164.5 MB / 0.5105 GB Notification: Performance of preOpt evalFunc (simulation): time 0.1724/3.105, allocations: 87.15 MB / 1.248 GB, free: 126.6 MB / 0.5105 GB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.0001168/3.105, allocations: 141.9 kB / 1.248 GB, free: 126.5 MB / 0.5105 GB Notification: Performance of preOpt simplifyInStream (simulation): time 0.03035/3.135, allocations: 6.035 MB / 1.254 GB, free: 121.9 MB / 0.5105 GB Notification: Performance of pre-optimization done (n=995): time 8.303e-05/3.135, allocations: 2.375 kB / 1.254 GB, free: 121.9 MB / 0.5105 GB Notification: Performance of matching and sorting (n=1129): time 0.857/3.992, allocations: 115.5 MB / 1.367 GB, free: 154.9 MB / 0.5105 GB Notification: Performance of inlineWhenForInitialization (initialization): time 0.0001113/3.992, allocations: 171.7 kB / 1.367 GB, free: 154.8 MB / 0.5105 GB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.01977/4.012, allocations: 11.95 MB / 1.378 GB, free: 152.1 MB / 0.5105 GB Notification: Performance of collectPreVariables (initialization): time 0.005175/4.017, allocations: 212 kB / 1.379 GB, free: 151.9 MB / 0.5105 GB Notification: Performance of collectInitialEqns (initialization): time 0.006189/4.023, allocations: 7.991 MB / 1.386 GB, free: 148 MB / 0.5105 GB Notification: Performance of collectInitialBindings (initialization): time 0.008151/4.032, allocations: 4.536 MB / 1.391 GB, free: 144.5 MB / 0.5105 GB Notification: Performance of simplifyInitialFunctions (initialization): time 0.01273/4.044, allocations: 3.807 MB / 1.395 GB, free: 142.9 MB / 0.5105 GB Notification: Performance of setup shared object (initialization): time 6.998e-05/4.044, allocations: 480.8 kB / 1.395 GB, free: 142.4 MB / 0.5105 GB Notification: Performance of preBalanceInitialSystem (initialization): time 0.01848/4.063, allocations: 10.13 MB / 1.405 GB, free: 139.3 MB / 0.5105 GB Notification: Performance of partitionIndependentBlocks (initialization): time 0.02359/4.086, allocations: 17.47 MB / 1.422 GB, free: 125.2 MB / 0.5105 GB Notification: Performance of analyzeInitialSystem (initialization): time 0.04822/4.135, allocations: 33.37 MB / 1.455 GB, free: 102.2 MB / 0.5105 GB Notification: Performance of solveInitialSystemEqSystem (initialization): time 0.0003187/4.135, allocations: 44 kB / 1.455 GB, free: 102.2 MB / 0.5105 GB Notification: Performance of matching and sorting (n=1889) (initialization): time 0.6321/4.767, allocations: 71.8 MB / 1.525 GB, free: 130.1 MB / 0.5105 GB Notification: Performance of prepare postOptimizeDAE: time 0.0001804/4.767, allocations: 67.97 kB / 1.525 GB, free: 130.1 MB / 0.5105 GB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 0.000319/4.768, allocations: 148.2 kB / 1.525 GB, free: 130.1 MB / 0.5105 GB Notification: Performance of postOpt tearingSystem (initialization): time 0.1639/4.931, allocations: 55.59 MB / 1.579 GB, free: 124.9 MB / 0.5105 GB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.01893/4.95, allocations: 3.748 MB / 1.583 GB, free: 124.1 MB / 0.5105 GB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 0.1885/5.139, allocations: 88.18 MB / 1.669 GB, free: 52.23 MB / 0.5105 GB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.01996/5.159, allocations: 0.8352 MB / 1.67 GB, free: 51.4 MB / 0.5105 GB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.006293/5.165, allocations: 0.9367 MB / 1.671 GB, free: 50.46 MB / 0.5105 GB Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 677 * Number of states: 0 () * Number of discrete variables: 0 () * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (1841): * Single equations (assignments): 1838 * Array equations: 0 * Algorithm blocks: 0 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 3 * Mixed (continuous/discrete) equation systems: 0 Notification: Torn system details for strict tearing set: * Linear torn systems (#iteration vars, #inner vars, density): 2 systems {(1,3,100.0%), (33,10,82.4%)} * Non-linear torn systems (#iteration vars, #inner vars): 1 system {(1,3)} Notification: Performance of prepare postOptimizeDAE: time 0.01921/5.184, allocations: 4.915 MB / 1.676 GB, free: 45.62 MB / 0.5105 GB Notification: Performance of postOpt lateInlineFunction (simulation): time 0.01157/5.196, allocations: 1.406 MB / 1.677 GB, free: 44.8 MB / 0.5105 GB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.4876/5.684, allocations: 43.14 MB / 1.719 GB, free: 132.3 MB / 0.5105 GB Notification: Performance of postOpt inlineArrayEqn (simulation): time 0.0001037/5.684, allocations: 122.3 kB / 1.719 GB, free: 132.3 MB / 0.5105 GB Notification: Performance of postOpt constantLinearSystem (simulation): time 0.0001412/5.684, allocations: 18.38 kB / 1.719 GB, free: 132.3 MB / 0.5105 GB Notification: Performance of postOpt simplifysemiLinear (simulation): time 0.0003741/5.684, allocations: 63.91 kB / 1.719 GB, free: 132.3 MB / 0.5105 GB Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.3053/5.99, allocations: 66.08 MB / 1.784 GB, free: 112.1 MB / 0.5105 GB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 0.0001129/5.99, allocations: 3.438 kB / 1.784 GB, free: 112.1 MB / 0.5105 GB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.01413/6.004, allocations: 2.44 MB / 1.786 GB, free: 111.5 MB / 0.5105 GB Notification: Performance of postOpt tearingSystem (simulation): time 0.08586/6.09, allocations: 19.07 MB / 1.805 GB, free: 100.4 MB / 0.5105 GB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 0.003866/6.093, allocations: 471.5 kB / 1.805 GB, free: 99.97 MB / 0.5105 GB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 0.1022/6.196, allocations: 44.81 MB / 1.849 GB, free: 54.91 MB / 0.5105 GB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 4.689e-06/6.196, allocations: 4 kB / 1.849 GB, free: 54.91 MB / 0.5105 GB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.5461/6.742, allocations: 56.13 MB / 1.904 GB, free: 118.4 MB / 0.5105 GB Notification: Performance of postOpt removeConstants (simulation): time 0.01203/6.754, allocations: 2.895 MB / 1.907 GB, free: 118.4 MB / 0.5105 GB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.006262/6.76, allocations: 288.3 kB / 1.907 GB, free: 118.4 MB / 0.5105 GB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.01412/6.774, allocations: 0.5224 MB / 1.907 GB, free: 118.4 MB / 0.5105 GB Notification: Performance of postOpt findZeroCrossings (simulation): time 0.006647/6.781, allocations: 1.702 MB / 1.909 GB, free: 118.4 MB / 0.5105 GB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 0.002474/6.783, allocations: 471.9 kB / 1.91 GB, free: 118.4 MB / 0.5105 GB Notification: Performance of sorting global known variables: time 0.01045/6.794, allocations: 6.56 MB / 1.916 GB, free: 118.1 MB / 0.5105 GB Notification: Performance of sort global known variables: time 1.71e-07/6.794, allocations: 0 / 1.916 GB, free: 118.1 MB / 0.5105 GB Notification: Performance of remove unused functions: time 0.02813/6.822, allocations: 6.566 MB / 1.922 GB, free: 118.1 MB / 0.5105 GB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 15 * Number of states: 60 (solution.temperature,O2_free.logn,H2O.logn,relaxed.OxyHm[1].logn,relaxed.OxyHm[2].logn,relaxed.OxyHm[3].logn,relaxed.OxyHm[4].logn,relaxed.DeoxyHm[1].logn,relaxed.DeoxyHm[2].logn,relaxed.DeoxyHm[3].logn,relaxed.DeoxyHm[4].logn,relaxed.HmAH[1].logn,relaxed.HmAH[2].logn,relaxed.HmAH[3].logn,relaxed.HmAH[4].logn,relaxed.HmA[1].logn,relaxed.HmA[2].logn,relaxed.HmA[3].logn,relaxed.HmA[4].logn,relaxed.HmNH3[1].logn,relaxed.HmNH3[2].logn,relaxed.HmNH3[3].logn,relaxed.HmNH3[4].logn,relaxed.HmNH2[1].logn,relaxed.HmNH2[2].logn,relaxed.HmNH2[3].logn,relaxed.HmNH2[4].logn,relaxed.HmNHCOO[1].logn,relaxed.HmNHCOO[2].logn,relaxed.HmNHCOO[3].logn,relaxed.HmNHCOO[4].logn,tensed.OxyHm[1].logn,tensed.OxyHm[2].logn,tensed.OxyHm[3].logn,tensed.OxyHm[4].logn,tensed.DeoxyHm[1].logn,tensed.DeoxyHm[2].logn,tensed.DeoxyHm[3].logn,tensed.DeoxyHm[4].logn,tensed.HmAH[1].logn,tensed.HmAH[2].logn,tensed.HmAH[3].logn,tensed.HmAH[4].logn,tensed.HmA[1].logn,tensed.HmA[2].logn,tensed.HmA[3].logn,tensed.HmA[4].logn,tensed.HmNH3[1].logn,tensed.HmNH3[2].logn,tensed.HmNH3[3].logn,tensed.HmNH3[4].logn,tensed.HmNH2[1].logn,tensed.HmNH2[2].logn,tensed.HmNH2[3].logn,tensed.HmNH2[4].logn,tensed.HmNHCOO[1].logn,tensed.HmNHCOO[2].logn,tensed.HmNHCOO[3].logn,tensed.HmNHCOO[4].logn,CO2_free.logn) * Number of discrete variables: 0 () * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (1234): * Single equations (assignments): 1231 * Array equations: 0 * Algorithm blocks: 0 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 3 * Mixed (continuous/discrete) equation systems: 0 Notification: Torn system details for strict tearing set: * Linear torn systems (#iteration vars, #inner vars, density): 2 systems {(1,3,100.0%), (33,10,82.4%)} * Non-linear torn systems (#iteration vars, #inner vars): 1 system {(1,3)} Notification: Performance of Backend phase and start with SimCode phase: time 0.009936/6.832, allocations: 3.767 MB / 1.926 GB, free: 117.7 MB / 0.5105 GB Notification: Performance of simCode: created initialization part: time 0.06856/6.9, allocations: 25.11 MB / 1.951 GB, free: 111.2 MB / 0.5105 GB Notification: Performance of simCode: created event and clocks part: time 1.314e-05/6.9, allocations: 4 kB / 1.951 GB, free: 111.2 MB / 0.5105 GB Notification: Performance of simCode: created simulation system equations: time 0.03764/6.938, allocations: 12.25 MB / 1.963 GB, free: 107.3 MB / 0.5105 GB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.02201/6.96, allocations: 2.736 MB / 1.965 GB, free: 106.5 MB / 0.5105 GB Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.08605/7.046, allocations: 35.93 MB / 2 GB, free: 77.44 MB / 0.5105 GB Notification: Performance of simCode: some other stuff during SimCode phase: time 0.01284/7.059, allocations: 8.686 MB / 2.009 GB, free: 71.46 MB / 0.5105 GB Notification: Performance of simCode: alias equations: time 0.01245/7.071, allocations: 4.165 MB / 2.013 GB, free: 69.18 MB / 0.5105 GB Notification: Performance of simCode: all other stuff during SimCode phase: time 0.004529/7.076, allocations: 1.3 MB / 2.014 GB, free: 68.07 MB / 0.5105 GB Notification: Performance of SimCode: time 1.673e-06/7.076, allocations: 0 / 2.014 GB, free: 68.07 MB / 0.5105 GB Notification: Performance of Templates: time 0.8652/7.941, allocations: 329.1 MB / 2.335 GB, free: 115.3 MB / 0.5262 GB " [Timeout remaining time 652] make -j1 -f Chemical_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllostery.makefile [Timeout 660] (rm -f Chemical_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllostery.pipe ; mkfifo Chemical_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllostery.pipe ; head -c 1048576 < Chemical_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllostery.pipe >> ../files/Chemical_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllostery.sim & ./Chemical_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllostery -abortSlowSimulation -alarm=240 -lv LOG_STATS > Chemical_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllostery.pipe 2>&1) [Timeout 240] [Calling sys.exit(0), Time elapsed: 24.14138055802323]