Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001425/0.001425, allocations: 92.7 kB / 19.44 MB, free: 324 kB / 13.93 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001689/0.001689, allocations: 161.7 kB / 22.75 MB, free: 1.656 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.466/1.466, allocations: 177.1 MB / 203.1 MB, free: 5.609 MB / 186.7 MB
"
[Timeout remaining time 178]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo): time 0.1437/0.1437, allocations: 17.46 MB / 277 MB, free: 11.59 MB / 266.7 MB
"
[Timeout remaining time 180]
Using package Chemical with version 2.0.1 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Chemical.Obsolete.Examples.Hemoglobin.Joels57,tolerance=1e-05,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57")
translateModel(Chemical.Obsolete.Examples.Hemoglobin.Joels57,tolerance=1e-05,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.983e-06/1.983e-06, allocations: 0 / 352.8 MB, free: 10.21 MB / 282.7 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 2.998e-05/3.196e-05, allocations: 10.25 kB / 352.8 MB, free: 10.2 MB / 282.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Obsolete.mo:14335:7-14335:66:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Obsolete.mo:14335:7-14335:66:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"system\" component but
an inner \"system\" component is not defined.
For simulation drag Modelica.Fluid.System into your model
to specify system properties.
Notification: Performance of NFInst.instantiate(Chemical.Obsolete.Examples.Hemoglobin.Joels57): time 0.346/0.346, allocations: 74.57 MB / 427.4 MB, free: 13.66 MB / 330.8 MB
Notification: Performance of NFInst.instExpressions: time 0.4458/0.7918, allocations: 192.1 MB / 0.6049 GB, free: 2.02 MB / 442.8 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.01256/0.8043, allocations: 227.4 kB / 0.6052 GB, free: 2.02 MB / 442.8 MB
Notification: Performance of NFTyping.typeComponents: time 0.01381/0.8181, allocations: 4.513 MB / 0.6096 GB, free: 2.02 MB / 442.8 MB
Notification: Performance of NFTyping.typeBindings: time 0.05718/0.8753, allocations: 18.52 MB / 0.6277 GB, free: 12.79 MB / 458.8 MB
Notification: Performance of NFTyping.typeClassSections: time 0.08671/0.962, allocations: 33.51 MB / 0.6604 GB, free: 14.22 MB / 474.8 MB
Notification: Performance of NFFlatten.flatten: time 0.1056/1.068, allocations: 91.37 MB / 0.7496 GB, free: 0.7109 MB / 0.5262 GB
Notification: Performance of NFFlatten.resolveConnections: time 0.557/1.625, allocations: 54.86 MB / 0.8032 GB, free: 9.508 MB / 0.5419 GB
Notification: Performance of NFEvalConstants.evaluate: time 0.1378/1.762, allocations: 76.62 MB / 0.878 GB, free: 0 / 0.5419 GB
Notification: Performance of NFSimplifyModel.simplify: time 0.126/1.888, allocations: 51.55 MB / 0.9284 GB, free: 12.97 MB / 0.5888 GB
Notification: Performance of NFPackage.collectConstants: time 0.04315/1.932, allocations: 12.2 MB / 0.9403 GB, free: 0.7656 MB / 0.5888 GB
Notification: Performance of NFFlatten.collectFunctions: time 0.1279/2.059, allocations: 34.09 MB / 0.9736 GB, free: 0.9453 MB / 0.62 GB
Notification: Performance of NFScalarize.scalarize: time 0.6509/2.71, allocations: 24.25 MB / 0.9973 GB, free: 63.59 MB / 0.6359 GB
Notification: Performance of NFVerifyModel.verify: time 0.1054/2.816, allocations: 31.1 MB / 1.028 GB, free: 63.59 MB / 0.6359 GB
Notification: Performance of NFConvertDAE.convert: time 0.2741/3.09, allocations: 169 MB / 1.193 GB, free: 3.352 MB / 0.6359 GB
Notification: Performance of FrontEnd - DAE generated: time 8.787e-06/3.09, allocations: 0 / 1.193 GB, free: 3.352 MB / 0.6359 GB
Notification: Performance of FrontEnd: time 1.703e-06/3.09, allocations: 0 / 1.193 GB, free: 3.352 MB / 0.6359 GB
Notification: Performance of Transformations before backend: time 0.00441/3.094, allocations: 1 kB / 1.193 GB, free: 3.352 MB / 0.6359 GB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 11424
 * Number of variables: 11424
Notification: Performance of Generate backend data structure: time 0.6027/3.697, allocations: 71.18 MB / 1.262 GB, free: 213.4 MB / 0.6828 GB
Notification: Performance of prepare preOptimizeDAE: time 4.69e-05/3.697, allocations: 7.875 kB / 1.262 GB, free: 213.4 MB / 0.6828 GB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.1162/3.813, allocations: 19.77 MB / 1.282 GB, free: 206.9 MB / 0.6828 GB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.101/3.914, allocations: 43.55 MB / 1.324 GB, free: 188 MB / 0.6828 GB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.007516/3.922, allocations: 9.24 MB / 1.333 GB, free: 179.6 MB / 0.6828 GB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.03388/3.956, allocations: 4.596 MB / 1.338 GB, free: 178 MB / 0.6828 GB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.2662/4.222, allocations: 112.9 MB / 1.448 GB, free: 76.67 MB / 0.6828 GB
Notification: Performance of preOpt findStateOrder (simulation): time 0.002059/4.224, allocations: 27.94 kB / 1.448 GB, free: 76.64 MB / 0.6828 GB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.0304/4.254, allocations: 1.761 MB / 1.45 GB, free: 74.89 MB / 0.6828 GB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 0.0006657/4.255, allocations: 1.059 MB / 1.451 GB, free: 73.83 MB / 0.6828 GB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.5951/4.85, allocations: 153 MB / 1.6 GB, free: 176.3 MB / 0.6828 GB
Warning: The model contains alias variables with redundant start and/or conflicting nominal values. It is recommended to resolve the conflicts, because otherwise the system could be hard to solve. To print the conflicting alias sets and the chosen candidates please use -d=aliasConflicts.
Notification: Performance of preOpt removeSimpleEquations (simulation): time 1.112/5.962, allocations: 391 MB / 1.982 GB, free: 79.17 MB / 0.6828 GB
Notification: Performance of preOpt comSubExp (simulation): time 2.727/8.689, allocations: 0.6479 GB / 2.63 GB, free: 180.2 MB / 0.6828 GB
Notification: Performance of preOpt resolveLoops (simulation): time 0.106/8.795, allocations: 60.07 MB / 2.688 GB, free: 169.8 MB / 0.6828 GB
Notification: Performance of preOpt evalFunc (simulation): time 0.8281/9.623, allocations: 256.8 MB / 2.939 GB, free: 161.6 MB / 0.6828 GB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.0002742/9.624, allocations: 340.6 kB / 2.94 GB, free: 161.4 MB / 0.6828 GB
Notification: Performance of preOpt simplifyInStream (simulation): time 0.09457/9.718, allocations: 29.2 MB / 2.968 GB, free: 154.5 MB / 0.6828 GB
Notification: Performance of pre-optimization done (n=2985): time 0.0001504/9.718, allocations: 0 / 2.968 GB, free: 154.5 MB / 0.6828 GB
Notification: Performance of matching and sorting (n=3387): time 2.307/12.03, allocations: 424.7 MB / 3.383 GB, free: 26.44 MB / 0.6828 GB
Notification: Performance of inlineWhenForInitialization (initialization): time 0.0002521/12.03, allocations: 449.3 kB / 3.383 GB, free: 25.97 MB / 0.6828 GB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.3639/12.39, allocations: 30.72 MB / 3.413 GB, free: 169.8 MB / 0.6828 GB
Notification: Performance of collectPreVariables (initialization): time 0.0139/12.4, allocations: 0.5708 MB / 3.414 GB, free: 169.3 MB / 0.6828 GB
Notification: Performance of collectInitialEqns (initialization): time 0.01881/12.42, allocations: 21.54 MB / 3.435 GB, free: 158 MB / 0.6828 GB
Notification: Performance of collectInitialBindings (initialization): time 0.02509/12.45, allocations: 12.27 MB / 3.447 GB, free: 148.3 MB / 0.6828 GB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.05501/12.5, allocations: 9.864 MB / 3.456 GB, free: 144.6 MB / 0.6828 GB
Notification: Performance of setup shared object (initialization): time 5.533e-05/12.5, allocations: 301.1 kB / 3.457 GB, free: 144.3 MB / 0.6828 GB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.07303/12.58, allocations: 39.05 MB / 3.495 GB, free: 128.5 MB / 0.6828 GB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.08257/12.66, allocations: 53.24 MB / 3.547 GB, free: 95.4 MB / 0.6828 GB
Notification: Performance of analyzeInitialSystem (initialization): time 0.4668/13.13, allocations: 97.72 MB / 3.642 GB, free: 142.4 MB / 0.6828 GB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 0.0006632/13.13, allocations: 127.7 kB / 3.642 GB, free: 142.4 MB / 0.6828 GB
Notification: Performance of matching and sorting (n=5667) (initialization): time 1.77/14.9, allocations: 259.2 MB / 3.895 GB, free: 140.1 MB / 0.6984 GB
Notification: Performance of prepare postOptimizeDAE: time 0.0006642/14.9, allocations: 198.9 kB / 3.896 GB, free: 140.1 MB / 0.6984 GB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 0.0009579/14.9, allocations: 445.9 kB / 3.896 GB, free: 140.1 MB / 0.6984 GB
Notification: Performance of postOpt tearingSystem (initialization): time 0.5223/15.42, allocations: 201.4 MB / 4.093 GB, free: 51.31 MB / 0.6984 GB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.05479/15.47, allocations: 11.19 MB / 4.104 GB, free: 40.6 MB / 0.6984 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 1.457/16.93, allocations: 309.8 MB / 4.406 GB, free: 119.5 MB / 0.6984 GB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.06387/17, allocations: 2.477 MB / 4.409 GB, free: 119.5 MB / 0.6984 GB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.01938/17.02, allocations: 2.798 MB / 4.411 GB, free: 119.5 MB / 0.6984 GB
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 2031
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (5523):
 * Single equations (assignments): 5514
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 9
 * Mixed (continuous/discrete) equation systems: 0
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 6 systems
   {(1,3,100.0%), (33,10,82.4%), (1,3,100.0%), (33,10,82.4%), (1,3,100.0%), (33,10,82.4%)}
 * Non-linear torn systems (#iteration vars, #inner vars): 3 systems
   {(1,3), (1,3), (1,3)}
Notification: Performance of prepare postOptimizeDAE: time 0.0655/17.08, allocations: 18.34 MB / 4.429 GB, free: 119.3 MB / 0.6984 GB
Notification: Performance of postOpt lateInlineFunction (simulation): time 0.03872/17.12, allocations: 4.201 MB / 4.433 GB, free: 119.3 MB / 0.6984 GB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.9057/18.03, allocations: 152.3 MB / 4.582 GB, free: 69.29 MB / 0.6984 GB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 0.0004806/18.03, allocations: 356 kB / 4.582 GB, free: 68.95 MB / 0.6984 GB
Notification: Performance of postOpt constantLinearSystem (simulation): time 0.0007417/18.03, allocations: 56 kB / 4.582 GB, free: 68.89 MB / 0.6984 GB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 0.001359/18.03, allocations: 179.3 kB / 4.583 GB, free: 68.71 MB / 0.6984 GB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 1.332/19.36, allocations: 223.3 MB / 4.801 GB, free: 104.9 MB / 0.6984 GB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 0.0003932/19.36, allocations: 18.25 kB / 4.801 GB, free: 104.9 MB / 0.6984 GB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.04416/19.4, allocations: 7.253 MB / 4.808 GB, free: 100.2 MB / 0.6984 GB
Notification: Performance of postOpt tearingSystem (simulation): time 0.2655/19.67, allocations: 67.97 MB / 4.874 GB, free: 32.66 MB / 0.6984 GB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 0.01241/19.68, allocations: 1.444 MB / 4.876 GB, free: 31.22 MB / 0.6984 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 0.7083/20.39, allocations: 155.7 MB / 5.028 GB, free: 95.82 MB / 0.6984 GB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 2.378e-05/20.39, allocations: 14.94 kB / 5.028 GB, free: 95.82 MB / 0.6984 GB
Notification: Performance of postOpt symbolicJacobian (simulation): time 1.272/21.66, allocations: 201.4 MB / 5.224 GB, free: 99.87 MB / 0.6984 GB
Notification: Performance of postOpt removeConstants (simulation): time 0.03912/21.7, allocations: 11.32 MB / 5.235 GB, free: 96.15 MB / 0.6984 GB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.02138/21.72, allocations: 0.9184 MB / 5.236 GB, free: 95.55 MB / 0.6984 GB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.04323/21.77, allocations: 1.545 MB / 5.238 GB, free: 95.07 MB / 0.6984 GB
Notification: Performance of postOpt findZeroCrossings (simulation): time 0.02774/21.79, allocations: 4.685 MB / 5.242 GB, free: 94.4 MB / 0.6984 GB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 0.01338/21.81, allocations: 1.381 MB / 5.244 GB, free: 94.16 MB / 0.6984 GB
Notification: Performance of sorting global known variables: time 0.0436/21.85, allocations: 20.8 MB / 5.264 GB, free: 86.55 MB / 0.6984 GB
Notification: Performance of sort global known variables: time 2.3e-07/21.85, allocations: 0 / 5.264 GB, free: 86.55 MB / 0.6984 GB
Notification: Performance of remove unused functions: time 0.1206/21.97, allocations: 20.21 MB / 5.284 GB, free: 84.8 MB / 0.6984 GB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 45
 * Number of states: 180 (pCO2_2000.solution.temperature,pCO2_2000.O2_free.logn,pCO2_2000.H2O.logn,pCO2_2000.relaxed.OxyHm[1].logn,pCO2_2000.relaxed.OxyHm[2].logn,pCO2_2000.relaxed.OxyHm[3].logn,pCO2_2000.relaxed.OxyHm[4].logn,pCO2_2000.relaxed.DeoxyHm[1].logn,pCO2_2000.relaxed.DeoxyHm[2].logn,pCO2_2000.relaxed.DeoxyHm[3].logn,pCO2_2000.relaxed.DeoxyHm[4].logn,pCO2_2000.relaxed.HmAH[1].logn,pCO2_2000.relaxed.HmAH[2].logn,pCO2_2000.relaxed.HmAH[3].logn,pCO2_2000.relaxed.HmAH[4].logn,pCO2_2000.relaxed.HmA[1].logn,pCO2_2000.relaxed.HmA[2].logn,pCO2_2000.relaxed.HmA[3].logn,pCO2_2000.relaxed.HmA[4].logn,pCO2_2000.relaxed.HmNH3[1].logn,pCO2_2000.relaxed.HmNH3[2].logn,pCO2_2000.relaxed.HmNH3[3].logn,pCO2_2000.relaxed.HmNH3[4].logn,pCO2_2000.relaxed.HmNH2[1].logn,pCO2_2000.relaxed.HmNH2[2].logn,pCO2_2000.relaxed.HmNH2[3].logn,pCO2_2000.relaxed.HmNH2[4].logn,pCO2_2000.relaxed.HmNHCOO[1].logn,pCO2_2000.relaxed.HmNHCOO[2].logn,pCO2_2000.relaxed.HmNHCOO[3].logn,pCO2_2000.relaxed.HmNHCOO[4].logn,pCO2_2000.tensed.OxyHm[1].logn,pCO2_2000.tensed.OxyHm[2].logn,pCO2_2000.tensed.OxyHm[3].logn,pCO2_2000.tensed.OxyHm[4].logn,pCO2_2000.tensed.DeoxyHm[1].logn,pCO2_2000.tensed.DeoxyHm[2].logn,pCO2_2000.tensed.DeoxyHm[3].logn,pCO2_2000.tensed.DeoxyHm[4].logn,pCO2_2000.tensed.HmAH[1].logn,pCO2_2000.tensed.HmAH[2].logn,pCO2_2000.tensed.HmAH[3].logn,pCO2_2000.tensed.HmAH[4].logn,pCO2_2000.tensed.HmA[1].logn,pCO2_2000.tensed.HmA[2].logn,pCO2_2000.tensed.HmA[3].logn,pCO2_2000.tensed.HmA[4].logn,pCO2_2000.tensed.HmNH3[1].logn,pCO2_2000.tensed.HmNH3[2].logn,pCO2_2000.tensed.HmNH3[3].logn,pCO2_2000.tensed.HmNH3[4].logn,pCO2_2000.tensed.HmNH2[1].logn,pCO2_2000.tensed.HmNH2[2].logn,pCO2_2000.tensed.HmNH2[3].logn,pCO2_2000.tensed.HmNH2[4].logn,pCO2_2000.tensed.HmNHCOO[1].logn,pCO2_2000.tensed.HmNHCOO[2].logn,pCO2_2000.tensed.HmNHCOO[3].logn,pCO2_2000.tensed.HmNHCOO[4].logn,pCO2_2000.CO2_free.logn,pCO2_5330.solution.temperature,pCO2_5330.O2_free.logn,pCO2_5330.H2O.logn,pCO2_5330.relaxed.OxyHm[1].logn,pCO2_5330.relaxed.OxyHm[2].logn,pCO2_5330.relaxed.OxyHm[3].logn,pCO2_5330.relaxed.OxyHm[4].logn,pCO2_5330.relaxed.DeoxyHm[1].logn,pCO2_5330.relaxed.DeoxyHm[2].logn,pCO2_5330.relaxed.DeoxyHm[3].logn,pCO2_5330.relaxed.DeoxyHm[4].logn,pCO2_5330.relaxed.HmAH[1].logn,pCO2_5330.relaxed.HmAH[2].logn,pCO2_5330.relaxed.HmAH[3].logn,pCO2_5330.relaxed.HmAH[4].logn,pCO2_5330.relaxed.HmA[1].logn,pCO2_5330.relaxed.HmA[2].logn,pCO2_5330.relaxed.HmA[3].logn,pCO2_5330.relaxed.HmA[4].logn,pCO2_5330.relaxed.HmNH3[1].logn,pCO2_5330.relaxed.HmNH3[2].logn,pCO2_5330.relaxed.HmNH3[3].logn,pCO2_5330.relaxed.HmNH3[4].logn,pCO2_5330.relaxed.HmNH2[1].logn,pCO2_5330.relaxed.HmNH2[2].logn,pCO2_5330.relaxed.HmNH2[3].logn,pCO2_5330.relaxed.HmNH2[4].logn,pCO2_5330.relaxed.HmNHCOO[1].logn,pCO2_5330.relaxed.HmNHCOO[2].logn,pCO2_5330.relaxed.HmNHCOO[3].logn,pCO2_5330.relaxed.HmNHCOO[4].logn,pCO2_5330.tensed.OxyHm[1].logn,pCO2_5330.tensed.OxyHm[2].logn,pCO2_5330.tensed.OxyHm[3].logn,pCO2_5330.tensed.OxyHm[4].logn,pCO2_5330.tensed.DeoxyHm[1].logn,pCO2_5330.tensed.DeoxyHm[2].logn,pCO2_5330.tensed.DeoxyHm[3].logn,pCO2_5330.tensed.DeoxyHm[4].logn,pCO2_5330.tensed.HmAH[1].logn,pCO2_5330.tensed.HmAH[2].logn,pCO2_5330.tensed.HmAH[3].logn,pCO2_5330.tensed.HmAH[4].logn,pCO2_5330.tensed.HmA[1].logn,pCO2_5330.tensed.HmA[2].logn,pCO2_5330.tensed.HmA[3].logn,pCO2_5330.tensed.HmA[4].logn,pCO2_5330.tensed.HmNH3[1].logn,pCO2_5330.tensed.HmNH3[2].logn,pCO2_5330.tensed.HmNH3[3].logn,pCO2_5330.tensed.HmNH3[4].logn,pCO2_5330.tensed.HmNH2[1].logn,pCO2_5330.tensed.HmNH2[2].logn,pCO2_5330.tensed.HmNH2[3].logn,pCO2_5330.tensed.HmNH2[4].logn,pCO2_5330.tensed.HmNHCOO[1].logn,pCO2_5330.tensed.HmNHCOO[2].logn,pCO2_5330.tensed.HmNHCOO[3].logn,pCO2_5330.tensed.HmNHCOO[4].logn,pCO2_5330.CO2_free.logn,pCO2_9330.solution.temperature,pCO2_9330.O2_free.logn,pCO2_9330.H2O.logn,pCO2_9330.relaxed.OxyHm[1].logn,pCO2_9330.relaxed.OxyHm[2].logn,pCO2_9330.relaxed.OxyHm[3].logn,pCO2_9330.relaxed.OxyHm[4].logn,pCO2_9330.relaxed.DeoxyHm[1].logn,pCO2_9330.relaxed.DeoxyHm[2].logn,pCO2_9330.relaxed.DeoxyHm[3].logn,pCO2_9330.relaxed.DeoxyHm[4].logn,pCO2_9330.relaxed.HmAH[1].logn,pCO2_9330.relaxed.HmAH[2].logn,pCO2_9330.relaxed.HmAH[3].logn,pCO2_9330.relaxed.HmAH[4].logn,pCO2_9330.relaxed.HmA[1].logn,pCO2_9330.relaxed.HmA[2].logn,pCO2_9330.relaxed.HmA[3].logn,pCO2_9330.relaxed.HmA[4].logn,pCO2_9330.relaxed.HmNH3[1].logn,pCO2_9330.relaxed.HmNH3[2].logn,pCO2_9330.relaxed.HmNH3[3].logn,pCO2_9330.relaxed.HmNH3[4].logn,pCO2_9330.relaxed.HmNH2[1].logn,pCO2_9330.relaxed.HmNH2[2].logn,pCO2_9330.relaxed.HmNH2[3].logn,pCO2_9330.relaxed.HmNH2[4].logn,pCO2_9330.relaxed.HmNHCOO[1].logn,pCO2_9330.relaxed.HmNHCOO[2].logn,pCO2_9330.relaxed.HmNHCOO[3].logn,pCO2_9330.relaxed.HmNHCOO[4].logn,pCO2_9330.tensed.OxyHm[1].logn,pCO2_9330.tensed.OxyHm[2].logn,pCO2_9330.tensed.OxyHm[3].logn,pCO2_9330.tensed.OxyHm[4].logn,pCO2_9330.tensed.DeoxyHm[1].logn,pCO2_9330.tensed.DeoxyHm[2].logn,pCO2_9330.tensed.DeoxyHm[3].logn,pCO2_9330.tensed.DeoxyHm[4].logn,pCO2_9330.tensed.HmAH[1].logn,pCO2_9330.tensed.HmAH[2].logn,pCO2_9330.tensed.HmAH[3].logn,pCO2_9330.tensed.HmAH[4].logn,pCO2_9330.tensed.HmA[1].logn,pCO2_9330.tensed.HmA[2].logn,pCO2_9330.tensed.HmA[3].logn,pCO2_9330.tensed.HmA[4].logn,pCO2_9330.tensed.HmNH3[1].logn,pCO2_9330.tensed.HmNH3[2].logn,pCO2_9330.tensed.HmNH3[3].logn,pCO2_9330.tensed.HmNH3[4].logn,pCO2_9330.tensed.HmNH2[1].logn,pCO2_9330.tensed.HmNH2[2].logn,pCO2_9330.tensed.HmNH2[3].logn,pCO2_9330.tensed.HmNH2[4].logn,pCO2_9330.tensed.HmNHCOO[1].logn,pCO2_9330.tensed.HmNHCOO[2].logn,pCO2_9330.tensed.HmNHCOO[3].logn,pCO2_9330.tensed.HmNHCOO[4].logn,pCO2_9330.CO2_free.logn)
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (3702):
 * Single equations (assignments): 3693
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 9
 * Mixed (continuous/discrete) equation systems: 0
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 6 systems
   {(1,3,100.0%), (33,10,82.4%), (1,3,100.0%), (33,10,82.4%), (1,3,100.0%), (33,10,82.4%)}
 * Non-linear torn systems (#iteration vars, #inner vars): 3 systems
   {(1,3), (1,3), (1,3)}
Notification: Performance of Backend phase and start with SimCode phase: time 0.0409/22.01, allocations: 11.22 MB / 5.295 GB, free: 82.26 MB / 0.6984 GB
Notification: Performance of simCode: created initialization part: time 0.2218/22.23, allocations: 85.3 MB / 5.378 GB, free: 20.93 MB / 0.6984 GB
Notification: Performance of simCode: created event and clocks part: time 1.859e-05/22.23, allocations: 4 kB / 5.378 GB, free: 20.93 MB / 0.6984 GB
Notification: Performance of simCode: created simulation system equations: time 0.4839/22.72, allocations: 55.12 MB / 5.432 GB, free: 149 MB / 0.714 GB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.07467/22.79, allocations: 9.175 MB / 5.441 GB, free: 148.2 MB / 0.714 GB
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.3501/23.14, allocations: 123 MB / 5.561 GB, free: 107.2 MB / 0.714 GB
Notification: Performance of simCode: some other stuff during SimCode phase: time 0.07249/23.22, allocations: 30.57 MB / 5.591 GB, free: 84.83 MB / 0.714 GB
Notification: Performance of simCode: alias equations: time 0.06868/23.28, allocations: 15.44 MB / 5.606 GB, free: 74.14 MB / 0.714 GB
Notification: Performance of simCode: all other stuff during SimCode phase: time 0.02847/23.31, allocations: 4.296 MB / 5.61 GB, free: 70.51 MB / 0.714 GB
Notification: Performance of SimCode: time 2.635e-06/23.31, allocations: 0 / 5.61 GB, free: 70.51 MB / 0.714 GB
Notification: Performance of Templates: time 3.145/26.46, allocations: 1.019 GB / 6.629 GB, free: 147.8 MB / 0.7765 GB
"
[Timeout remaining time 634]
make -j1 -f Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57.makefile [Timeout 660]
(rm -f Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57.pipe ; mkfifo Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57.pipe ; head -c 1048576 < Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57.pipe >> ../files/Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57.sim & ./Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57  -abortSlowSimulation -alarm=480 -lv LOG_STATS > Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57.pipe 2>&1) [Timeout 480]
[Calling sys.exit(0), Time elapsed: 70.75593904196285]