Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_master_Chemical.Examples.debug.EnzymeKinetics3.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001878/0.001878, allocations: 88.72 kB / 19.44 MB, free: 356 kB / 13.93 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.002392/0.002392, allocations: 157.7 kB / 22.75 MB, free: 1.684 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.504/1.504, allocations: 177.1 MB / 203.1 MB, free: 5.598 MB / 186.7 MB
"
[Timeout remaining time 178]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo): time 0.1574/0.1574, allocations: 17.45 MB / 277 MB, free: 11.58 MB / 266.7 MB
"
[Timeout remaining time 180]
Using package Chemical with version 2.0.1 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Chemical.Examples.debug.EnzymeKinetics3,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Examples.debug.EnzymeKinetics3")
translateModel(Chemical.Examples.debug.EnzymeKinetics3,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Examples.debug.EnzymeKinetics3") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.853e-06/1.853e-06, allocations: 0 / 352.8 MB, free: 10.21 MB / 282.7 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 3.95e-05/4.135e-05, allocations: 9.203 kB / 352.8 MB, free: 10.2 MB / 282.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1586:5-1586:64:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1586:5-1586:64:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"system\" component but
an inner \"system\" component is not defined.
For simulation drag Modelica.Fluid.System into your model
to specify system properties.
Notification: Performance of NFInst.instantiate(Chemical.Examples.debug.EnzymeKinetics3): time 0.05637/0.05642, allocations: 35.19 MB / 388 MB, free: 7.109 MB / 314.7 MB
Notification: Performance of NFInst.instExpressions: time 0.02447/0.08089, allocations: 10.88 MB / 398.9 MB, free: 12.18 MB / 330.7 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.004366/0.08526, allocations: 107.1 kB / 399 MB, free: 12.08 MB / 330.7 MB
Notification: Performance of NFTyping.typeComponents: time 0.007592/0.09285, allocations: 2.082 MB / 401.1 MB, free: 9.984 MB / 330.7 MB
Notification: Performance of NFTyping.typeBindings: time 0.008436/0.1013, allocations: 1.959 MB / 403 MB, free: 8.012 MB / 330.7 MB
Notification: Performance of NFTyping.typeClassSections: time 0.01243/0.1137, allocations: 4.302 MB / 407.3 MB, free: 3.691 MB / 330.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1332:3-1332:55:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.MM has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1333:3-1333:87:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.Hf has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1334:3-1334:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.H0 has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.blow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.bhigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1341:3-1342:83:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.z has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1344:3-1344:89:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.phase has no value, and is fixed during initialization (fixed=true), using available start value (start=Chemical.Interfaces.Phase.Gas) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1347:3-1347:140:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.VmBase has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1348:3-1348:137:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.VmExcess has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
Notification: Performance of NFFlatten.flatten: time 0.1731/0.2868, allocations: 4.776 MB / 412.1 MB, free: 34.18 MB / 330.7 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.001523/0.2883, allocations: 0.8234 MB / 412.9 MB, free: 33.95 MB / 330.7 MB
Notification: Performance of NFEvalConstants.evaluate: time 0.004606/0.2929, allocations: 2.634 MB / 415.6 MB, free: 33.95 MB / 330.7 MB
Notification: Performance of NFSimplifyModel.simplify: time 0.004353/0.2973, allocations: 2.088 MB / 417.7 MB, free: 33.95 MB / 330.7 MB
Notification: Performance of NFPackage.collectConstants: time 0.001111/0.2984, allocations: 405.8 kB / 418.1 MB, free: 33.95 MB / 330.7 MB
Notification: Performance of NFFlatten.collectFunctions: time 0.005778/0.3042, allocations: 2.145 MB / 420.2 MB, free: 33.95 MB / 330.7 MB
Notification: Performance of NFScalarize.scalarize: time 0.001391/0.3055, allocations: 1.373 MB / 421.6 MB, free: 33.95 MB / 330.7 MB
Notification: Performance of NFVerifyModel.verify: time 0.002715/0.3083, allocations: 1.502 MB / 423.1 MB, free: 33.83 MB / 330.7 MB
Notification: Performance of NFConvertDAE.convert: time 0.01122/0.3195, allocations: 7.477 MB / 430.6 MB, free: 31.89 MB / 330.7 MB
Notification: Performance of FrontEnd - DAE generated: time 7.944e-06/0.3195, allocations: 0 / 430.6 MB, free: 31.89 MB / 330.7 MB
Notification: Performance of FrontEnd: time 2.485e-06/0.3195, allocations: 0 / 430.6 MB, free: 31.89 MB / 330.7 MB
Notification: Performance of Transformations before backend: time 0.0002661/0.3198, allocations: 0 / 430.6 MB, free: 31.89 MB / 330.7 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 1270
 * Number of variables: 1270
Notification: Performance of Generate backend data structure: time 0.01026/0.33, allocations: 5.422 MB / 436 MB, free: 28.47 MB / 330.7 MB
Notification: Performance of prepare preOptimizeDAE: time 4.167e-05/0.3301, allocations: 9.688 kB / 436 MB, free: 28.47 MB / 330.7 MB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.004171/0.3342, allocations: 2.24 MB / 438.2 MB, free: 27.41 MB / 330.7 MB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.003502/0.3377, allocations: 2.587 MB / 440.8 MB, free: 25.65 MB / 330.7 MB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.0004132/0.3381, allocations: 0.6462 MB / 441.5 MB, free: 25.05 MB / 330.7 MB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.0004565/0.3386, allocations: 391.4 kB / 441.8 MB, free: 24.68 MB / 330.7 MB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.01528/0.3539, allocations: 15.38 MB / 457.2 MB, free: 9.34 MB / 330.7 MB
Notification: Performance of preOpt findStateOrder (simulation): time 9.345e-05/0.354, allocations: 192 / 457.2 MB, free: 9.34 MB / 330.7 MB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.0004199/0.3544, allocations: 159.3 kB / 457.4 MB, free: 9.191 MB / 330.7 MB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 0.0004842/0.3549, allocations: 0.5978 MB / 458 MB, free: 8.594 MB / 330.7 MB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.03402/0.3889, allocations: 27.36 MB / 485.3 MB, free: 13.3 MB / 362.7 MB
Warning: The model contains alias variables with redundant start and/or conflicting nominal values. It is recommended to resolve the conflicts, because otherwise the system could be hard to solve. To print the conflicting alias sets and the chosen candidates please use -d=aliasConflicts.
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.05834/0.4472, allocations: 26.11 MB / 0.4995 GB, free: 3.57 MB / 378.7 MB
Notification: Performance of preOpt comSubExp (simulation): time 0.007254/0.4545, allocations: 3.595 MB / 0.503 GB, free: 4 kB / 378.7 MB
Notification: Performance of preOpt resolveLoops (simulation): time 0.005623/0.4601, allocations: 3.067 MB / 0.506 GB, free: 12.93 MB / 394.7 MB
Notification: Performance of preOpt evalFunc (simulation): time 0.03589/0.496, allocations: 15.48 MB / 0.5211 GB, free: 13.52 MB / 410.7 MB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 6.381e-05/0.4961, allocations: 56.5 kB / 0.5211 GB, free: 13.46 MB / 410.7 MB
Notification: Performance of pre-optimization done (n=227): time 5.14e-06/0.4961, allocations: 2.672 kB / 0.5211 GB, free: 13.46 MB / 410.7 MB
Notification: Performance of matching and sorting (n=324): time 0.09167/0.5878, allocations: 29.15 MB / 0.5496 GB, free: 396 kB / 426.7 MB
Notification: Performance of inlineWhenForInitialization (initialization): time 8.29e-05/0.5878, allocations: 77.41 kB / 0.5497 GB, free: 304 kB / 426.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1348:3-1348:137:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.VmExcess has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1347:3-1347:140:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.VmBase has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1344:3-1344:89:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.phase has no value, and is fixed during initialization (fixed=true), using available start value (start=Chemical.Interfaces.Phase.Gas) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1341:3-1342:83:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.z has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.bhigh[3] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.bhigh[2] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.bhigh[1] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[7] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[6] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[5] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[4] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[3] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[2] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[1] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.blow[3] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.blow[2] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.blow[1] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[7] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[6] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[5] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[4] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[3] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[2] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[1] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1334:3-1334:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.H0 has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1333:3-1333:87:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.Hf has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1332:3-1332:55:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.MM has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.004481/0.5923, allocations: 2.32 MB / 0.5519 GB, free: 13.96 MB / 442.7 MB
Notification: Performance of collectPreVariables (initialization): time 0.001067/0.5934, allocations: 65.7 kB / 0.552 GB, free: 13.89 MB / 442.7 MB
Notification: Performance of collectInitialEqns (initialization): time 0.00221/0.5956, allocations: 2.284 MB / 0.5542 GB, free: 11.61 MB / 442.7 MB
Notification: Performance of collectInitialBindings (initialization): time 0.002008/0.5976, allocations: 1.113 MB / 0.5553 GB, free: 10.51 MB / 442.7 MB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.003528/0.6011, allocations: 0.9844 MB / 0.5563 GB, free: 9.52 MB / 442.7 MB
Notification: Performance of setup shared object (initialization): time 0.0001675/0.6013, allocations: 301.1 kB / 0.5566 GB, free: 9.223 MB / 442.7 MB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.007769/0.6091, allocations: 4.226 MB / 0.5607 GB, free: 4.996 MB / 442.7 MB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.1465/0.7556, allocations: 5.375 MB / 0.5659 GB, free: 157.3 MB / 442.7 MB
Notification: It was not possible to check the given initialization system for consistency symbolically, because the relevant equations are part of an algebraic loop. This is not supported yet.
Notification: Performance of analyzeInitialSystem (initialization): time 0.407/1.163, allocations: 74.6 MB / 0.6388 GB, free: 101.1 MB / 442.7 MB
Warning: It was not possible to solve the under-determined initial system (301 equations and 329 variables)
Error: No system for the symbolic initialization was generated
"
[Timeout remaining time 659]
[Calling sys.exit(0), Time elapsed: 3.5555360059952363]